EWM23701.1, cds6981 (CDS) Nannochloropsis gaditana

Overview
NameEWM23701.1
Unique Namecds6981
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:207266..207928 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23701.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g19.4198.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:207266..207928 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23701.1 vs. NCBI_GenBank
Match: gi|585104855|gb|EWM23701.1| (hypothetical protein Naga_100030g19 [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 2.394e-157
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 
Query:    1 MARRILLPSTVALLFGLAFLHLKNVCAFLPSGRSRYLPFRCTTHILRKNCVRSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKSTVSRLPLPSAGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDELARQRALQGPVPLEALKEKE 220
            MARRILLPSTVALLFGLAFLHLKNVCAFLPSGRSRYLPFRCTTHILRKNCVRSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKSTVSRLPLPSAGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDELARQRALQGPVPLEALKEKE
Sbjct:    1 MARRILLPSTVALLFGLAFLHLKNVCAFLPSGRSRYLPFRCTTHILRKNCVRSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKSTVSRLPLPSAGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDELARQRALQGPVPLEALKEKE 220
[Close]
BLAST of EWM23701.1 vs. NCBI_GenBank
Match: gi|299116052|emb|CBN74468.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.6254 bits (161), Expect = 5.407e-10
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0 
Query:  107 PSAGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARL 192
            P++G +   T  D P   P+Y  LV++ ++ I+FTGS+ E+ GG P LG TAT  +   + P F+  F  A+K+   E EED+A+ 
Sbjct:  104 PASGKEEAVTTSDYPIPLPSYLLLVLATVVSIAFTGSIFEVTGGHPELGYTATYIIGTLSLPTFIFLFYAAIKKGKAEVEEDDAKF 189
The following BLAST results are available for this feature:
BLAST of EWM23701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104855|gb|EWM23701.1|2.394e-157100.00hypothetical protein Naga_100030g19 [Nannochlorops... [more]
gi|299116052|emb|CBN74468.1|5.407e-1038.37conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6997rna6997Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications