rna6995, rna6995 (mRNA) Nannochloropsis gaditana

Overview
Namerna6995
Unique Namerna6995
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length693
Alignment locationCM002470.1:203744..205192 -

Link to JBrowse

Properties
Property NameValue
Productaaa family cdc48 subfamily
Orig transcript idgnl|cribi|Naga_100030g17.4203.mrna
Orig protein idgnl|cribi|Naga_100030g17.4203
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:203744..205192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g17gene6761Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23706.1cds6979Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6995rna6995-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6995 ID=rna6995|Name=rna6995|organism=Nannochloropsis gaditana|type=mRNA|length=693bp
AGGCCTACCACAGGACGCGCGGCACGACATTGACCTCTCAAAGTCGAATT
CGATTCATTAAATAGGGGACATGGAGGCGGTGAATGGACTTCTGGCCAAG
TTAGCGTCAGACTCGGACTTCCAAGACGACTTGCGCCAGCCCCAGGTCCG
CGTGGCATTGAAGCACTGGACGAACGAAAATCGCTTGCCGCCCTTGCAGG
CCGAGAAGCTGATGAAAGACTACAGGGTCCTGGCTGTCCTGCAGAAGCTC
AAGAGCCTACAGACCGCCTGCCAGCGAGCCGGCATGGCCGTGCCTCTGGA
CGCGGTCCTGCGTCAAGAGGGATCCTTGGGCTCGCTGCGATCCACAGGCG
CGAGATCGCTTACATCTACCTCTTACTCAGCCTCAGTGCCCGAGGGAGAG
CAGCCGGGGAAAGGGGCGAAGACAGTGTCGAGGCGGAGAGGGCGGGGCGC
GGGAGAGTCTGCCGGCGCGTCTGCAGCGTCAAGTGTTGCTCCTGCGCGCC
CGATAGTGCAGGTGCCCGAGACAGTGGCAGGGTGGGCCTATCTCTTGAGC
CCCTTGGTAATGCTGGGACTGGGCCTCGCTTACTTCGTATACATGTGTCT
GTACCCCTGAAGTAGACGTGGGAACTTAGCGAGCCATCCTTGTATGTGCA
GAGCAGACTGAAGAACTAAGGCTGATCCCATCCCGCTGCCTGG
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protein sequence of rna6995

>rna6995-protein ID=rna6995-protein|Name=rna6995|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MPSGSKKQQIRYQQQYQDVVMAEQLDDIVLRRGPASTPALPDRLVLSSLD
SRRLRVKAGDWLLISGSQPEKESRVNQENEDCPRRDSGGLRLMLRAWPGS
NVPQGTAVGGGPLLSGQFFGKRRQGEDVNVSVRALPAMAKWLAASKVVLR
VVPEGDGRESTGGGARETSRRDTPSQSSVAPVLFWKARLHSVLVGQLVFP
GLRLAFASLGQGVSFEVVEVRAARGEMAGGAESMPDLATLTLKEVTAPQE
PRVGLDLESVCEVLPGTRVAVAGLFPHGKAETATGWRGEPSGAKWGERLV
EGGWWASVGGLEAVVEELRQGVEQSLDSLHVFLDRGLRPARGFLLVGPSG
TGKTTLLR
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mRNA from alignment at CM002470.1:203744..205192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6995 ID=rna6995|Name=rna6995|organism=Nannochloropsis gaditana|type=mRNA|length=1449bp|location=Sequence derived from alignment at CM002470.1:203744..205192- (Nannochloropsis gaditana)
ATAACAGGCGGACAAGCACAGGCATTCAATATGCGAAGATCTGTCATCCT
GAACAGCTAAATAGAGGACAAGCAGGGAGCGGCAGGACAGGTCGTCCTAG
AGCACGCTCGCGCCAACAAAGGTAATAAGAGCTTTCATAGATACCATGGA
TTGACACCCACATTTCAAGCACAAAGTAATGATTATGCGGCTGTAGCTTT
TGCAACCCTGCGAAGGTCCGTCCGTAATTCACACACATTGCCCCTAATAC
AGGTTAACCTCCTCCCTCATTTACTTCAGTGCCTTAGAGCAGTCTCACGA
AACCTATGCCTTCTGGAAGCAAAAAACAACAAATACGTTACCAGCAGCAA
TATCAAGATGTAGTCATGGCCGAACAGCTGGACGATATCGTGCTTCGGCG
TGGCCCAGCTTCAACACCCGCCCTGCCAGACCGGCTGGTTCTCTCTTCTC
TTGACTCTCGACGCCTCAGAGTTAAGGCGGGTGACTGGCTCCTGATCAGT
GGGTCGCAGCCAGAGAAGGAATCGAGGGTGAACCAGGAAAATGAGGATTG
TCCACGGCGTGACAGCGGAGGTTTGCGACTGATGCTGCGGGCATGGCCGG
GTAGCAATGTGCCGCAGGGGACGGCCGTGGGGGGGGGGCCGCTTCTGTCG
GGCCAGTTTTTTGGCAAGCGAAGGCAAGGGGAAGACGTCAATGTTTCGGT
CCGCGCCTTACCTGCGATGGCCAAGTGGCTCGCTGCATCGAAGGTAGTCC
TGCGAGTCGTTCCAGAAGGAGACGGAAGGGAATCAACGGGAGGAGGGGCC
CGGGAGACGAGCAGGCGCGATACCCCCTCCCAGAGCAGCGTCGCCCCAGT
CCTCTTCTGGAAGGCGCGGCTTCATAGCGTGCTCGTGGGTCAGCTGGTCT
TTCCGGGACTGCGATTGGCGTTCGCGTCCTTGGGCCAGGGCGTGAGCTTC
GAGGTAGTCGAGGTCCGGGCGGCGCGAGGGGAGATGGCCGGTGGGGCTGA
AAGCATGCCAGACCTTGCGACATTAACGCTCAAGGAGGTAACGGCCCCGC
AAGAGCCGCGTGTAGGCCTGGATCTGGAATCTGTGTGCGAGGTGCTGCCT
GGAACGCGCGTGGCGGTCGCGGGCCTTTTCCCCCATGGAAAGGCGGAGAC
GGCGACTGGTTGGAGAGGTGAGCCCTCGGGGGCGAAGTGGGGGGAACGGC
TTGTGGAGGGAGGCTGGTGGGCCTCAGTGGGAGGGCTGGAGGCCGTGGTG
GAAGAGCTTCGTCAGGGCGTAGAACAGAGCTTGGACTCCCTCCACGTCTT
TCTCGACCGCGGGTTGCGGCCAGCGAGGGGCTTTCTGCTGGTGGGGCCCA
GCGGGACGGGCAAGACAACTCTCCTCAGGTAGGATGGGCTCGGCTTCCAT
GCGCGGAACCTGAAGACTCACTCCCTCTCCTTCGTTTCCCCGCTACTCC
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Coding sequence (CDS) from alignment at CM002470.1:203744..205192-

>rna6995 ID=rna6995|Name=rna6995|organism=Nannochloropsis gaditana|type=CDS|length=1077bp|location=Sequence derived from alignment at CM002470.1:203744..205192- (Nannochloropsis gaditana)
ATGCCTTCTGGAAGCAAAAAACAACAAATACGTTACCAGCAGCAATATCA
AGATGTAGTCATGGCCGAACAGCTGGACGATATCGTGCTTCGGCGTGGCC
CAGCTTCAACACCCGCCCTGCCAGACCGGCTGGTTCTCTCTTCTCTTGAC
TCTCGACGCCTCAGAGTTAAGGCGGGTGACTGGCTCCTGATCAGTGGGTC
GCAGCCAGAGAAGGAATCGAGGGTGAACCAGGAAAATGAGGATTGTCCAC
GGCGTGACAGCGGAGGTTTGCGACTGATGCTGCGGGCATGGCCGGGTAGC
AATGTGCCGCAGGGGACGGCCGTGGGGGGGGGGCCGCTTCTGTCGGGCCA
GTTTTTTGGCAAGCGAAGGCAAGGGGAAGACGTCAATGTTTCGGTCCGCG
CCTTACCTGCGATGGCCAAGTGGCTCGCTGCATCGAAGGTAGTCCTGCGA
GTCGTTCCAGAAGGAGACGGAAGGGAATCAACGGGAGGAGGGGCCCGGGA
GACGAGCAGGCGCGATACCCCCTCCCAGAGCAGCGTCGCCCCAGTCCTCT
TCTGGAAGGCGCGGCTTCATAGCGTGCTCGTGGGTCAGCTGGTCTTTCCG
GGACTGCGATTGGCGTTCGCGTCCTTGGGCCAGGGCGTGAGCTTCGAGGT
AGTCGAGGTCCGGGCGGCGCGAGGGGAGATGGCCGGTGGGGCTGAAAGCA
TGCCAGACCTTGCGACATTAACGCTCAAGGAGGTAACGGCCCCGCAAGAG
CCGCGTGTAGGCCTGGATCTGGAATCTGTGTGCGAGGTGCTGCCTGGAAC
GCGCGTGGCGGTCGCGGGCCTTTTCCCCCATGGAAAGGCGGAGACGGCGA
CTGGTTGGAGAGGTGAGCCCTCGGGGGCGAAGTGGGGGGAACGGCTTGTG
GAGGGAGGCTGGTGGGCCTCAGTGGGAGGGCTGGAGGCCGTGGTGGAAGA
GCTTCGTCAGGGCGTAGAACAGAGCTTGGACTCCCTCCACGTCTTTCTCG
ACCGCGGGTTGCGGCCAGCGAGGGGCTTTCTGCTGGTGGGGCCCAGCGGG
ACGGGCAAGACAACTCTCCTCAGGTAG
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Synonyms
Publications