rna6987, rna6987 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6987
Unique Name	rna6987
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3286
Alignment location	CM002470.1:181492..183358 -

Link to JBrowse

Properties


Property Name	Value
Product	Vacuolar protein sorting-associated VPS28
Orig transcript id	gnl\|cribi\|Naga_100030g9.4207.mrna
Orig protein id	gnl\|cribi\|Naga_100030g9.4207
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:181492..183358 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g9	gene6753	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23710.1	cds6971	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6987	rna6987-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:181492..183358-
coding sequence from alignment at CM002470.1:181492..183358-

mRNA sequence

>rna6987 ID=rna6987|Name=rna6987|organism=Nannochloropsis gaditana|type=mRNA|length=3286bp
TGCACAATTTTATTTTCTCGAGAACCATTTCCATGAGAGGTGATGTGCTG
CGGGGTATGTTTCAATAGATGATTGAATTGCAACTCCAGGCCCCTCACGG
CCTCGGCCAGCATGGCAACACAAGGAGGGACACTCGAGCCGCTCAATTTT
TGAAAAATGTCTGTACAACTTTTCCCATCGTGAAAGTAATGAGGAGAAAC
TATTTCTAGAATGCGCAACACAACTTGAGTTGTATTGATCTTTTATGCGC
GTGCTTAGGGCGCCTTGAGAATTGGCGAGTCTCTTAGTCTTCCTTTTTCT
GTTTCCACATCAAGAATCCGCATACGGCCATGGCGACCCCGCAGCAAACT
GTCAGCGCCGATGAGAAAGTGGAGATGAGTCTCGATGATCTCATTAAACT
CGATCGAAAGCAGCAGCTCGTGGAAAAGAAGAAGAAAAAGAAGCCTACTG
TTCCCCCTGCTGCTGCCAAAGCGCAGCAGCAGCAACAGCAAGGCAAAGAT
AGTGCTAGAGCATCCAAACAAAGCGGAGCGCGCAAACCTCTGAAGCAGGT
ACAGGCAGGACAAATGCGAAAACCGGGACAAGCGGCGAAAAAGAGCGCTG
TACAAGCCCAGAGCAAGCGAAACACCGCATTCAATCAGTCTCGAGGGATT
CAAGTGACGCCCATGACTGGCATCACCAGCGCCGCGACGGGCAAGAAGAA
GGCCAAGAAAAAGAAAGCTGCGGCAAACATGACAAGTGCGGGGAACGGGG
GGGCACCGAAATCGGGTGCAAGCCAAGCAGGCAAGGCGATGGCTGCGGGA
TTCATTTTCGGGGGCTCGGGGGGGGCCGCAGGAGATAAAGCCTTGAGTCG
CGAGGGTTTCAAACTGCCCAAGGGTACGACGCTGAAAATTTCCATAAGCA
ACACACCTAAACCGGCGGCCGCCGCCTCCGTTCCAAGCTTGCGGGTTCCC
CTGAAAGCAAAGGGAGGCAATCGCGGGGGAGGGCAGCGCGTGAGTCTGAA
AGCTGCCCAAAGAGAGCGGCAGATGGGAGCAGGGGCGTTAACCCGGCGCA
TGGGCCGCATTTCCGTGACCCAGAACAATCGACAGGGACTGTTTGCCCAG
AGCCGCGGTCTGACCTTTCCCGAGCAGGTGCCCGTGGCGCAGGCGGGGGC
AGGGGGGACGGGCGGGAAGAAGAAGAAGACTGCGGGAGGGGTTTTCGTGG
GGGAGAAGTCACGGCAGGTGATGGTGCGTCGGAAAGCTTGAGGCGACAGC
CTCGATGGTCTGGCGTGAGGGAGGGATGTACATTTTCGTGAGGACAGGAG
GCTAAAGCCAGGAGCTGGGCGTGTACGGTGCCGTGGACGGTCTCAGGAGA
GGAAGAGGTGGAGGGAGGCATCTCAGGAGAGAGAGGCGGGGGCCTGGCTG
GGGGGGTTGAGCGCTGGAGGGGGTGGGCAGCGGGAGCGCTCAAGGGTAAG
GACGATTAGGGGGACAGGGATGGCGGGGATTGAGGCGGAGCGTGCGGGAG
AGAGGGCCTGGGGATAGATAGAAGCGAGGCTGCGGTGTGCGTCCAGCCAG
AGCCTACATCGCCCATTCGAAACCACCGGAACCGGACGCGCTCAAAGAAA
CAGCGATTGTGTCGAACGCCCGCCAGCTCCTCCCATCTCGCCGCACTGCG
GACAGGGAGAGGGGCCGCCATGCCCGCATGTGTACAAGGGATGGAATTTC
TTTCTCCTAGTCCAAGGACTTCAGCCAGGCGTGGAAGCTGCTGTAACCTT
GGTCGAGGTCGAACAGCAATTGCCGCGCCTGCTCCTCTGTGATCGCGTCC
ATCGCCCGCATGGCGTTCAACGTCACGAGCCACTCCTCCAGCTTCTTGCT
ACCCAGAAATTCCGCCGGAAGGCCCTGGACCCGCCTCAGACTTGTCATGA
TGTCCGTGAGCATGGGCTGCAACTCGTCCACGGCCCGTTGCTCCAAACGC
ACACCATCCATGGCCGTGATGAAATACTGCACGGTCTCCGCCACTTTGAT
GGCATCCCCGCGTCCGTCGTCCACGGAGGGGTTTAACACGGTGGAGGGCA
CTCCTAAACGCAGCAATCGCTCCACGGCACGCGGACAATCCATGTGATAT
TCTGTCATGAATGCACGGGCATCTGCCACAGTCTTGGCTGCCAGCACAGC
CGCCTCGGTTGATTTGAACTGTGATATAAGCTTACTACAAGCAGCAGTGT
AATCGTCCTCGCTTATTGCATCGCGGGCGAAGGCAATTTCCAGGTGTTCT
GTCGCCTTAATGATGGAGAAGAGATCGGCTAGATCCTCGTATTTGCGACG
TTCTGCTGCATTGTTGATTAGTTTGATTTCTTGTTTCATGGAAGCTGGAG
TTGGTGACAACGACTCGTATTTGCCGCGAGGAGGCTTTGAGGGCTGTTGT
TGAATAGCAGCGTCGTAGGGCGGTGGCTGCATGCTTTTGGGCCTGAAATT
TGCTGTAGGGGTATTCAACAAGCGGGCATGAAAACGCGAAGGAAAGGGAG
GATGGAGAGTCTGTCCATTGTACAAACAGCGCGAATTACATACATGATAA
ATTTTGGGGCCGCCCGTCCTTTCAGGCACCGCAAAGTCCACCCACCCAGA
GACCCGCGATCAGACAGGGAGAAATGGGAAGCCAGTGGTGGTGAGGGTTA
GGGTTGTTGCGGTCGTGCCCGCAATGTAAGGTTTTTTGGTCCGTGTGACG
CTGAGTGATATTTTTGTGTCCGCAGTGTGAGTCGGAGTAACGGTGAGTGA
TGTTTGTCGCTGCTCCAACCAACAGAAAGGGACGTCGCACGGAAATGTAA
GGAATGAAATCGCGACCTCTGATCAAATGAAGCAGCCAGAGTGGTGTCTT
GCAAGGATAGAGATTAGCGGAAAAAATACATACCTGGTGTAAGACACCAG
CGTGAAAGCAAGTTGGGGCTCGTGGTAAGACATTTTCATGGCTAGCTTCC
GTCATGGTCATAGGGGGAGGTTAACGAAATTGCCGACTTCCTGCCTATAT
TTGCTTCCAGTGTATGCGTGCCTGAATTAGACAGGGGTGTGAACTCATTA
TGAACGACTAGCGGGAGAAAAGTGGCAGCTTCAAGAATGCCCCGATGCAT
TAGGTCCTACTAGAAACAGTTATGGCTTGGCAAGACAAATTGCGACCTAC
CAAACATTACCCCCCAAAAGTTCGACGCTTCTTTGTGAGATGACGCCTTG
CTGTTTCCCAGGTAGTGCTCATTTTTGTCTTTTGTTATGAGAAGCTTTGC
CGAAATAAAGCAACAAAAAAAGAACGGGCGCAATGA

protein sequence of rna6987

>rna6987-protein ID=rna6987-protein|Name=rna6987|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYED
LADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAK
TVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAET
VQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEE
WLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD

mRNA from alignment at CM002470.1:181492..183358-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6987 ID=rna6987|Name=rna6987|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp|location=Sequence derived from alignment at CM002470.1:181492..183358- (Nannochloropsis gaditana)
CCCGCTAGTCGTTCATAATGAGTTCACACCCCTGTCTAATTCAGGCACGC
ATACACTGGAAGCAAATATAGGCAGGAAGTCGGCAATTTCGTTAACCTCC
CCCTATGACCATGACGGAAGCTAGCCATGAAAATGTCTTACCACGAGCCC
CAACTTGCTTTCACGCTGGTGTCTTACACCAGGTATGTATTTTTTCCGCT
AATCTCTATCCTTGCAAGACACCACTCTGGCTGCTTCATTTGATCAGAGG
TCGCGATTTCATTCCTTACATTTCCGTGCGACGTCCCTTTCTGTTGGTTG
GAGCAGCGACAAACATCACTCACCGTTACTCCGACTCACACTGCGGACAC
AAAAATATCACTCAGCGTCACACGGACCAAAAAACCTTACATTGCGGGCA
CGACCGCAACAACCCTAACCCTCACCACCACTGGCTTCCCATTTCTCCCT
GTCTGATCGCGGGTCTCTGGGTGGGTGGACTTTGCGGTGCCTGAAAGGAC
GGGCGGCCCCAAAATTTATCATGTATGTAATTCGCGCTGTTTGTACAATG
GACAGACTCTCCATCCTCCCTTTCCTTCGCGTTTTCATGCCCGCTTGTTG
AATACCCCTACAGCAAATTTCAGGCCCAAAAGCATGCAGCCACCGCCCTA
CGACGCTGCTATTCAACAACAGCCCTCAAAGCCTCCTCGCGGCAAATACG
AGTCGTTGTCACCAACTCCAGCTTCCATGAAACAAGAAATCAAACTAATC
AACAATGCAGCAGAACGTCGCAAATACGAGGATCTAGCCGATCTCTTCTC
CATCATTAAGGCGACAGAACACCTGGAAATTGCCTTCGCCCGCGATGCAA
TAAGCGAGGACGATTACACTGCTGCTTGTAGTAAGCTTATATCACAGTTC
AAATCAACCGAGGCGGCTGTGCTGGCAGCCAAGACTGTGGCAGATGCCCG
TGCATTCATGACAGAATATCACATGGATTGTCCGCGTGCCGTGGAGCGAT
TGCTGCGTTTAGGAGTGCCCTCCACCGTGTTAAACCCCTCCGTGGACGAC
GGACGCGGGGATGCCATCAAAGTGGCGGAGACCGTGCAGTATTTCATCAC
GGCCATGGATGGTGTGCGTTTGGAGCAACGGGCCGTGGACGAGTTGCAGC
CCATGCTCACGGACATCATGACAAGTCTGAGGCGGGTCCAGGGCCTTCCG
GCGGAATTTCTGGGTAGCAAGAAGCTGGAGGAGTGGCTCGTGACGTTGAA
CGCCATGCGGGCGATGGACGCGATCACAGAGGAGCAGGCGCGGCAATTGC
TGTTCGACCTCGACCAAGGTTACAGCAGCTTCCACGCCTGGCTGAAGTCC
TTGGACTAGGAGAAAGAAATTCCATCCCTTGTACACATGCGGGCATGGCG
GCCCCTCTCCCTGTCCGCAGTGCGGCGAGATGGGAGGAGCTGGCGGGCGT
TCGACACAATCGCTGTTTCTTTGAGCGCGTCCGGTTCCGGTGGTTTCGAA
TGGGCGATGTAGGCTCTGGCTGGACGCACACCGCAGCCTCGCTTCTATCT
ATCCCCAGGCCCTCTCTCCCGCACGCTCCGCCTCAATCCCCGCCATCCCT
GTCCCCCTAATCGTCCTTACCCTTGAGCGCTCCCGCTGCCCACCCCCTCC
AGCGCTCAACCCCCCCAGCCAGGCCCCCGCCTCTCTCTCCTGAGATGCCT
CCCTCCACCTCTTCCTCTCCTGAGACCGTCCACGGCACCGTACACGCCCA
GCTCCTGGCTTTAGCCTCCTGTCCTCACGAAAATGTACATCCCTCCCTCA
CGCCAGACCATCGAGGCTGTCGCCTCAAGCTTTCCGACGCACCATCACCT
GCCGTGACTTCTCCCCC

Coding sequence (CDS) from alignment at CM002470.1:181492..183358-

>rna6987 ID=rna6987|Name=rna6987|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at CM002470.1:181492..183358- (Nannochloropsis gaditana)
ATGCAGCCACCGCCCTACGACGCTGCTATTCAACAACAGCCCTCAAAGCC
TCCTCGCGGCAAATACGAGTCGTTGTCACCAACTCCAGCTTCCATGAAAC
AAGAAATCAAACTAATCAACAATGCAGCAGAACGTCGCAAATACGAGGAT
CTAGCCGATCTCTTCTCCATCATTAAGGCGACAGAACACCTGGAAATTGC
CTTCGCCCGCGATGCAATAAGCGAGGACGATTACACTGCTGCTTGTAGTA
AGCTTATATCACAGTTCAAATCAACCGAGGCGGCTGTGCTGGCAGCCAAG
ACTGTGGCAGATGCCCGTGCATTCATGACAGAATATCACATGGATTGTCC
GCGTGCCGTGGAGCGATTGCTGCGTTTAGGAGTGCCCTCCACCGTGTTAA
ACCCCTCCGTGGACGACGGACGCGGGGATGCCATCAAAGTGGCGGAGACC
GTGCAGTATTTCATCACGGCCATGGATGGTGTGCGTTTGGAGCAACGGGC
CGTGGACGAGTTGCAGCCCATGCTCACGGACATCATGACAAGTCTGAGGC
GGGTCCAGGGCCTTCCGGCGGAATTTCTGGGTAGCAAGAAGCTGGAGGAG
TGGCTCGTGACGTTGAACGCCATGCGGGCGATGGACGCGATCACAGAGGA
GCAGGCGCGGCAATTGCTGTTCGACCTCGACCAAGGTTACAGCAGCTTCC
ACGCCTGGCTGAAGTCCTTGGACTAG

Synonyms

Publications