EWM23710.1, cds6971 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|553181400|ref|XP_005853560.1| (ESCRT-I complex subunit VPS28 [Nannochloropsis gaditana CCMP526] >gi|422295497|gb|EKU22796.1| ESCRT-I complex subunit VPS28 [Nannochloropsis gaditana CCMP526] >gi|585104864|gb|EWM23710.1| Vacuolar protein sorting-associated VPS28 [Nannochloropsis gaditana]) HSP 1 Score: 496.508 bits (1277), Expect = 8.710e-178 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query: 1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD 241
MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD
Sbjct: 1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD 241
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|301115154|ref|XP_002905306.1| (vacuolar protein sorting-associated protein 28 [Phytophthora infestans T30-4] >gi|262110095|gb|EEY68147.1| vacuolar protein sorting-associated protein 28 [Phytophthora infestans T30-4]) HSP 1 Score: 237.269 bits (604), Expect = 1.788e-75 Identity = 118/238 (49.58%), Postives = 164/238 (68.91%), Query Frame = 0
Query: 1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
+QPP +A P PP +EIKL + +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+ + +F+ EY +DCPRA+ERL+R+GVP+TV++ + + + D++ VA+TVQ FIT MD ++L RAVDE+QP+L+++M+SL V GLP +F G K+E WL T+NAMRA + + EEQARQL FDL++ YSSF A+L
Sbjct: 8 VQPPSSSSAPYLAPPSPP--------------VREIKLWTDTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNAMRASEELDEEQARQLSFDLERAYSSFMAFLN 230
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|675213953|ref|XP_008915861.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566032231|gb|ETI55142.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567969910|gb|ETK94974.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567998284|gb|ETL48359.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568027503|gb|ETM01457.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568058008|gb|ETM54655.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568083905|gb|ETM98858.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570335934|gb|ETO83882.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570959975|gb|ETP24954.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570996310|gb|ETP52945.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 237.269 bits (604), Expect = 2.199e-75 Identity = 113/214 (52.80%), Postives = 159/214 (74.30%), Query Frame = 0
Query: 25 LSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
L+P P +EIKL + +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+ + +F+ EY +DCPRA+ERL+R+GVP+TV++ + + + D++ VA+TVQ FIT MD ++L RAVDE+QP+L+++M+SL V GLP +F G K+E WL T+N+MRA + + EEQARQL FDL++ YSSF A+L
Sbjct: 20 LAPPPPQQIREIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFLN 232
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|675213951|ref|XP_008915860.1| (hypothetical protein PPTG_19403 [Phytophthora parasitica INRA-310] >gi|566032230|gb|ETI55141.1| hypothetical protein F443_02164 [Phytophthora parasitica P1569] >gi|567969909|gb|ETK94973.1| hypothetical protein L915_02065 [Phytophthora parasitica] >gi|567998283|gb|ETL48358.1| hypothetical protein L916_02037 [Phytophthora parasitica] >gi|568027502|gb|ETM01456.1| hypothetical protein L917_01972 [Phytophthora parasitica] >gi|568058007|gb|ETM54654.1| hypothetical protein L914_02050 [Phytophthora parasitica] >gi|568083904|gb|ETM98857.1| hypothetical protein PPTG_19403 [Phytophthora parasitica INRA-310] >gi|570335933|gb|ETO83881.1| hypothetical protein F444_02172 [Phytophthora parasitica P1976] >gi|570959974|gb|ETP24953.1| hypothetical protein F441_02135 [Phytophthora parasitica CJ01A1] >gi|570996309|gb|ETP52944.1| hypothetical protein F442_02122 [Phytophthora parasitica P10297]) HSP 1 Score: 236.498 bits (602), Expect = 4.517e-75 Identity = 113/214 (52.80%), Postives = 159/214 (74.30%), Query Frame = 0
Query: 25 LSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
L+P P +EIKL + +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+ + +F+ EY +DCPRA+ERL+R+GVP+TV++ + + + D++ VA+TVQ FIT MD ++L RAVDE+QP+L+++M+SL V GLP +F G K+E WL T+N+MRA + + EEQARQL FDL++ YSSF A+L
Sbjct: 22 LAPPPPQQIREIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFLN 234
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|698791036|ref|XP_009828550.1| (hypothetical protein H257_05384 [Aphanomyces astaci] >gi|574116329|gb|ETV81813.1| hypothetical protein H257_05384 [Aphanomyces astaci]) HSP 1 Score: 233.032 bits (593), Expect = 1.960e-73 Identity = 120/248 (48.39%), Postives = 168/248 (67.74%), Query Frame = 0
Query: 2 QPPPY----DAAIQQQPSKPPRGKYESLSPTPA-----SMK--QEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
QPP Y +IQ Q + ++S T + S+K ++KL +A +RR YED++DL++IIK TEHLE A+ RDAIS D+YT AC+KLISQ+K+ E A+ A + AF++ Y +DCPRAVERL+RLGVP+TV++ + DA+ VA+TVQ+FIT D +++ RAVDE+QP+L++ M SL +V+GLP F G KLE+WL LNAMRA D + E+Q RQL FDL+Q Y+ F ++L
Sbjct: 9 QPPAYAYTSSGSIQVQTTVMSSSTTFAISRTSSATSISSLKPPSDVKLFESAKDRRMYEDMSDLYAIIKTTEHLETAYVRDAISPDEYTEACTKLISQYKTAETALRNAGHLVSIDAFLSHYRLDCPRAVERLVRLGVPATVVHNTTSTSV-DAVNVAQTVQHFITLSDALKMNIRAVDEVQPLLSESMGSLTKVKGLPPTFDGLMKLEQWLRVLNAMRASDELDEDQTRQLSFDLEQAYTGFMSFLN 255
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|1173941626|gb|OQR90749.1| (vacuolar protein sorting-associated protein 28 [Achlya hypogyna]) HSP 1 Score: 230.335 bits (586), Expect = 1.599e-72 Identity = 109/205 (53.17%), Postives = 150/205 (73.17%), Query Frame = 0
Query: 35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
E+KL + A ERR YEDL+DL++IIK TEHLE A+ RDAIS D+YT AC+KLISQ+K+TE A+ A + +F+T Y +DCPRA+ERL+RLGVP+TV++ + D + VA+TVQ+ IT D ++L RAVDE+QP+L++ M SL +V GLP F G KLE+WL LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct: 43 EVKLWDTAKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDEYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVH-NTTSSSSDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMASLTKVHGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 246
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|813130434|ref|XP_012197648.1| (hypothetical protein SPRG_03688 [Saprolegnia parasitica CBS 223.65] >gi|641537924|gb|KDO31768.1| hypothetical protein SPRG_03688 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 228.794 bits (582), Expect = 6.721e-72 Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 0
Query: 29 PASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
P + EIKL + ERR YEDL+DL++IIK TEHLE A+ RDAIS D YT AC+KLISQ+K+TE A+ A + +F+T Y +DCPRA+ERL+RLGVP+TV++ + D + VA+TVQ+ IT D ++L RAVDE+QP+L++ M+SL +V GLP F G KLE+WL LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct: 40 PPAKVGEIKLWDTPKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDAYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMSSLSKVNGLPPTFEGRVKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 249
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|669151500|ref|XP_008611312.1| (hypothetical protein SDRG_07268 [Saprolegnia diclina VS20] >gi|530736786|gb|EQC35028.1| hypothetical protein SDRG_07268 [Saprolegnia diclina VS20]) HSP 1 Score: 228.794 bits (582), Expect = 7.577e-72 Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 0
Query: 29 PASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
P + EIKL + ERR YEDL+DL++IIK TEHLE A+ RDAIS D YT AC+KLISQ+K+TE A+ A + +F+T Y +DCPRA+ERL+RLGVP+TV++ + D + VA+TVQ+ IT D ++L RAVDE+QP+L++ M+SL +V GLP F G KLE+WL LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct: 40 PPAKVGEIKLWDTPKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDAYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMSSLSKVNGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 249
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|673042221|ref|XP_008875071.1| (hypothetical protein H310_10452, partial [Aphanomyces invadans] >gi|574469264|gb|ETV96279.1| hypothetical protein H310_10452, partial [Aphanomyces invadans]) HSP 1 Score: 228.794 bits (582), Expect = 9.432e-72 Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 0
Query: 35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
E+KL +A +RR YED++DL++IIK TEHLE A+ RDAIS ++YT AC+KLISQ+K+ E A+ A + AF+ Y +DCPRAVERL+RLGVP+TV++ + DA+ VA+TVQ+FIT D +++ RAVDE+QP+L++ M S+ +V+GLP F G KLE+WL LNAMRA D + + Q RQL FDL+Q Y+ F ++L
Sbjct: 57 EVKLFESAKDRRMYEDMSDLYAIIKTTEHLETAYVRDAISPEEYTEACTKLISQYKTAETALRNAGHLVSIDAFLAHYRLDCPRAVERLVRLGVPATVVHNTTSTN-ADAVNVAQTVQHFITLSDALKMNIRAVDEVQPLLSESMASITKVKGLPPTFDGLLKLEQWLRVLNAMRASDELDDNQTRQLSFDLEQAYTGFMSFLN 259
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|1173956054|gb|OQS02935.1| (vacuolar protein sorting-associated protein 28 [Thraustotheca clavata]) HSP 1 Score: 227.639 bits (579), Expect = 2.275e-71 Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 0
Query: 35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
E+KL ++A ERR YEDL+DL++IIK TEHLE A+ RDAI+ + YT AC+KLISQ+K+TE A+ A + +FMT Y +DCPRA+ERL+RLGVP+TV++ + D + VA+TVQ+ IT D ++L RAVDE+QP+L++ M SL +V GLP F G KLE+WL LNAMRA D + ++Q RQ+ FDL++ Y+ F ++L
Sbjct: 49 EVKLWDSAKERRMYEDLSDLYAIIKTTEHLETAYVRDAITPEAYTEACTKLISQYKTTETALRNAGHLVSIESFMTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMASLSKVSGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMSFLN 251 The following BLAST results are available for this feature:
BLAST of EWM23710.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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