EWM23710.1, cds6971 (CDS) Nannochloropsis gaditana

Overview
NameEWM23710.1
Unique Namecds6971
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:182000..182725 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23710.1
ProductVacuolar protein sorting-associated VPS28
Orig transcript idgnl|cribi|Naga_100030g9.4207.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:182000..182725 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR017899VPS28_C
IPR017898VPS28_N
IPR007143VPS28
Homology
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|553181400|ref|XP_005853560.1| (ESCRT-I complex subunit VPS28 [Nannochloropsis gaditana CCMP526] >gi|422295497|gb|EKU22796.1| ESCRT-I complex subunit VPS28 [Nannochloropsis gaditana CCMP526] >gi|585104864|gb|EWM23710.1| Vacuolar protein sorting-associated VPS28 [Nannochloropsis gaditana])

HSP 1 Score: 496.508 bits (1277), Expect = 8.710e-178
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD 241
            MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD
Sbjct:    1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKSLD 241          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|301115154|ref|XP_002905306.1| (vacuolar protein sorting-associated protein 28 [Phytophthora infestans T30-4] >gi|262110095|gb|EEY68147.1| vacuolar protein sorting-associated protein 28 [Phytophthora infestans T30-4])

HSP 1 Score: 237.269 bits (604), Expect = 1.788e-75
Identity = 118/238 (49.58%), Postives = 164/238 (68.91%), Query Frame = 0
Query:    1 MQPPPYDAAIQQQPSKPPRGKYESLSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            +QPP   +A    P  PP               +EIKL  +  +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+     +    +F+ EY +DCPRA+ERL+R+GVP+TV++ +  + + D++ VA+TVQ FIT MD ++L  RAVDE+QP+L+++M+SL  V GLP +F G  K+E WL T+NAMRA + + EEQARQL FDL++ YSSF A+L 
Sbjct:    8 VQPPSSSSAPYLAPPSPP--------------VREIKLWTDTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNAMRASEELDEEQARQLSFDLERAYSSFMAFLN 230          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|675213953|ref|XP_008915861.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566032231|gb|ETI55142.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567969910|gb|ETK94974.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567998284|gb|ETL48359.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568027503|gb|ETM01457.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568058008|gb|ETM54655.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568083905|gb|ETM98858.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570335934|gb|ETO83882.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570959975|gb|ETP24954.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570996310|gb|ETP52945.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 237.269 bits (604), Expect = 2.199e-75
Identity = 113/214 (52.80%), Postives = 159/214 (74.30%), Query Frame = 0
Query:   25 LSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            L+P P    +EIKL  +  +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+     +    +F+ EY +DCPRA+ERL+R+GVP+TV++ +  + + D++ VA+TVQ FIT MD ++L  RAVDE+QP+L+++M+SL  V GLP +F G  K+E WL T+N+MRA + + EEQARQL FDL++ YSSF A+L 
Sbjct:   20 LAPPPPQQIREIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFLN 232          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|675213951|ref|XP_008915860.1| (hypothetical protein PPTG_19403 [Phytophthora parasitica INRA-310] >gi|566032230|gb|ETI55141.1| hypothetical protein F443_02164 [Phytophthora parasitica P1569] >gi|567969909|gb|ETK94973.1| hypothetical protein L915_02065 [Phytophthora parasitica] >gi|567998283|gb|ETL48358.1| hypothetical protein L916_02037 [Phytophthora parasitica] >gi|568027502|gb|ETM01456.1| hypothetical protein L917_01972 [Phytophthora parasitica] >gi|568058007|gb|ETM54654.1| hypothetical protein L914_02050 [Phytophthora parasitica] >gi|568083904|gb|ETM98857.1| hypothetical protein PPTG_19403 [Phytophthora parasitica INRA-310] >gi|570335933|gb|ETO83881.1| hypothetical protein F444_02172 [Phytophthora parasitica P1976] >gi|570959974|gb|ETP24953.1| hypothetical protein F441_02135 [Phytophthora parasitica CJ01A1] >gi|570996309|gb|ETP52944.1| hypothetical protein F442_02122 [Phytophthora parasitica P10297])

HSP 1 Score: 236.498 bits (602), Expect = 4.517e-75
Identity = 113/214 (52.80%), Postives = 159/214 (74.30%), Query Frame = 0
Query:   25 LSPTPASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            L+P P    +EIKL  +  +RRKYEDLADLF+I K TEHLE A+ RDAI+ ++YT AC+KLISQ+K+ E A+     +    +F+ EY +DCPRA+ERL+R+GVP+TV++ +  + + D++ VA+TVQ FIT MD ++L  RAVDE+QP+L+++M+SL  V GLP +F G  K+E WL T+N+MRA + + EEQARQL FDL++ YSSF A+L 
Sbjct:   22 LAPPPPQQIREIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVH-NTTNRKTDSVNVAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFLN 234          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|698791036|ref|XP_009828550.1| (hypothetical protein H257_05384 [Aphanomyces astaci] >gi|574116329|gb|ETV81813.1| hypothetical protein H257_05384 [Aphanomyces astaci])

HSP 1 Score: 233.032 bits (593), Expect = 1.960e-73
Identity = 120/248 (48.39%), Postives = 168/248 (67.74%), Query Frame = 0
Query:    2 QPPPY----DAAIQQQPSKPPRGKYESLSPTPA-----SMK--QEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            QPP Y      +IQ Q +        ++S T +     S+K   ++KL  +A +RR YED++DL++IIK TEHLE A+ RDAIS D+YT AC+KLISQ+K+ E A+  A  +    AF++ Y +DCPRAVERL+RLGVP+TV++ +      DA+ VA+TVQ+FIT  D +++  RAVDE+QP+L++ M SL +V+GLP  F G  KLE+WL  LNAMRA D + E+Q RQL FDL+Q Y+ F ++L 
Sbjct:    9 QPPAYAYTSSGSIQVQTTVMSSSTTFAISRTSSATSISSLKPPSDVKLFESAKDRRMYEDMSDLYAIIKTTEHLETAYVRDAISPDEYTEACTKLISQYKTAETALRNAGHLVSIDAFLSHYRLDCPRAVERLVRLGVPATVVHNTTSTSV-DAVNVAQTVQHFITLSDALKMNIRAVDEVQPLLSESMGSLTKVKGLPPTFDGLMKLEQWLRVLNAMRASDELDEDQTRQLSFDLEQAYTGFMSFLN 255          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|1173941626|gb|OQR90749.1| (vacuolar protein sorting-associated protein 28 [Achlya hypogyna])

HSP 1 Score: 230.335 bits (586), Expect = 1.599e-72
Identity = 109/205 (53.17%), Postives = 150/205 (73.17%), Query Frame = 0
Query:   35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
            E+KL + A ERR YEDL+DL++IIK TEHLE A+ RDAIS D+YT AC+KLISQ+K+TE A+  A  +    +F+T Y +DCPRA+ERL+RLGVP+TV++ +      D + VA+TVQ+ IT  D ++L  RAVDE+QP+L++ M SL +V GLP  F G  KLE+WL  LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct:   43 EVKLWDTAKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDEYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVH-NTTSSSSDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMASLTKVHGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 246          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|813130434|ref|XP_012197648.1| (hypothetical protein SPRG_03688 [Saprolegnia parasitica CBS 223.65] >gi|641537924|gb|KDO31768.1| hypothetical protein SPRG_03688 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 228.794 bits (582), Expect = 6.721e-72
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 0
Query:   29 PASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
            P +   EIKL +   ERR YEDL+DL++IIK TEHLE A+ RDAIS D YT AC+KLISQ+K+TE A+  A  +    +F+T Y +DCPRA+ERL+RLGVP+TV++ +      D + VA+TVQ+ IT  D ++L  RAVDE+QP+L++ M+SL +V GLP  F G  KLE+WL  LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct:   40 PPAKVGEIKLWDTPKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDAYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMSSLSKVNGLPPTFEGRVKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 249          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|669151500|ref|XP_008611312.1| (hypothetical protein SDRG_07268 [Saprolegnia diclina VS20] >gi|530736786|gb|EQC35028.1| hypothetical protein SDRG_07268 [Saprolegnia diclina VS20])

HSP 1 Score: 228.794 bits (582), Expect = 7.577e-72
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 0
Query:   29 PASMKQEIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLKS 239
            P +   EIKL +   ERR YEDL+DL++IIK TEHLE A+ RDAIS D YT AC+KLISQ+K+TE A+  A  +    +F+T Y +DCPRA+ERL+RLGVP+TV++ +      D + VA+TVQ+ IT  D ++L  RAVDE+QP+L++ M+SL +V GLP  F G  KLE+WL  LNAMRA D + ++Q RQ+ FDL++ Y+ F A+L +
Sbjct:   40 PPAKVGEIKLWDTPKERRMYEDLSDLYAIIKTTEHLETAYVRDAISPDAYTEACTKLISQYKTTETALRNAGHLVSIDSFLTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMSSLSKVNGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMAFLNN 249          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|673042221|ref|XP_008875071.1| (hypothetical protein H310_10452, partial [Aphanomyces invadans] >gi|574469264|gb|ETV96279.1| hypothetical protein H310_10452, partial [Aphanomyces invadans])

HSP 1 Score: 228.794 bits (582), Expect = 9.432e-72
Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 0
Query:   35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            E+KL  +A +RR YED++DL++IIK TEHLE A+ RDAIS ++YT AC+KLISQ+K+ E A+  A  +    AF+  Y +DCPRAVERL+RLGVP+TV++ +      DA+ VA+TVQ+FIT  D +++  RAVDE+QP+L++ M S+ +V+GLP  F G  KLE+WL  LNAMRA D + + Q RQL FDL+Q Y+ F ++L 
Sbjct:   57 EVKLFESAKDRRMYEDMSDLYAIIKTTEHLETAYVRDAISPEEYTEACTKLISQYKTAETALRNAGHLVSIDAFLAHYRLDCPRAVERLVRLGVPATVVHNTTSTN-ADAVNVAQTVQHFITLSDALKMNIRAVDEVQPLLSESMASITKVKGLPPTFDGLLKLEQWLRVLNAMRASDELDDNQTRQLSFDLEQAYTGFMSFLN 259          
BLAST of EWM23710.1 vs. NCBI_GenBank
Match: gi|1173956054|gb|OQS02935.1| (vacuolar protein sorting-associated protein 28 [Thraustotheca clavata])

HSP 1 Score: 227.639 bits (579), Expect = 2.275e-71
Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 0
Query:   35 EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVDDGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
            E+KL ++A ERR YEDL+DL++IIK TEHLE A+ RDAI+ + YT AC+KLISQ+K+TE A+  A  +    +FMT Y +DCPRA+ERL+RLGVP+TV++ +      D + VA+TVQ+ IT  D ++L  RAVDE+QP+L++ M SL +V GLP  F G  KLE+WL  LNAMRA D + ++Q RQ+ FDL++ Y+ F ++L 
Sbjct:   49 EVKLWDSAKERRMYEDLSDLYAIIKTTEHLETAYVRDAITPEAYTEACTKLISQYKTTETALRNAGHLVSIESFMTHYRLDCPRAIERLVRLGVPATVVHNTTSSS-SDTVNVAQTVQHCITLSDYLKLNVRAVDEIQPLLSECMASLSKVSGLPPTFEGRLKLEQWLRVLNAMRASDELDDDQIRQMSFDLERAYTGFMSFLN 251          
The following BLAST results are available for this feature:
BLAST of EWM23710.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181400|ref|XP_005853560.1|8.710e-178100.00ESCRT-I complex subunit VPS28 [Nannochloropsis gad... [more]
gi|301115154|ref|XP_002905306.1|1.788e-7549.58vacuolar protein sorting-associated protein 28 [Ph... [more]
gi|675213953|ref|XP_008915861.1|2.199e-7552.80hypothetical protein, variant [Phytophthora parasi... [more]
gi|675213951|ref|XP_008915860.1|4.517e-7552.80hypothetical protein PPTG_19403 [Phytophthora para... [more]
gi|698791036|ref|XP_009828550.1|1.960e-7348.39hypothetical protein H257_05384 [Aphanomyces astac... [more]
gi|1173941626|gb|OQR90749.1|1.599e-7253.17vacuolar protein sorting-associated protein 28 [Ac... [more]
gi|813130434|ref|XP_012197648.1|6.721e-7252.13hypothetical protein SPRG_03688 [Saprolegnia paras... [more]
gi|669151500|ref|XP_008611312.1|7.577e-7252.13hypothetical protein SDRG_07268 [Saprolegnia dicli... [more]
gi|673042221|ref|XP_008875071.1|9.432e-7252.45hypothetical protein H310_10452, partial [Aphanomy... [more]
gi|1173956054|gb|OQS02935.1|2.275e-7152.45vacuolar protein sorting-associated protein 28 [Th... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6987rna6987Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications