rna6984, rna6984 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6984
Unique Name	rna6984
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1156
Alignment location	CM002470.1:172845..175643 -

Link to JBrowse

Properties


Property Name	Value
Product	Endonuclease/exonuclease/phosphatase
Orig transcript id	gnl\|cribi\|Naga_100030g6.4184.mrna
Orig protein id	gnl\|cribi\|Naga_100030g6.4184
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:172845..175643 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g6	gene6750	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23687.1	cds6968	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6984	rna6984-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:172845..175643-
coding sequence from alignment at CM002470.1:172845..175643-

mRNA sequence

>rna6984 ID=rna6984|Name=rna6984|organism=Nannochloropsis gaditana|type=mRNA|length=1156bp
ATGCATGCTGATGTGGAGAGTCCAAAGTGCAACGGGTCTCACTGCGCGAG
CCGCTCCCTGTTCTTCGAACGGGGTTGGACTTTTCCCCTTTTACCGACAG
GCATTCACTTTCTAAGCACTCATTTTTCTTGTCTTTTCTTCAGCACACAT
CCTATATTTCTGACCATGAAGACGGCAGCGATTTTCTCCCTGTTGGCTGT
TGCCGCCAACGCCTTTGTGCTCCCTACTCCCAAAGCTCCCCAGACTGTCG
TGAAGGGGACTCCCTTCGATACCGTTGACAAGGCGGAAATGGCGGTGGAG
AACAAGGCCCTGTCCGGCATGAGCGTCTTTGAGCGCGCCATGGCCGATTT
CAACGGCCGCTACCCCGCCGTGGCCGCGTTGGGCTTGGGCCCGAGCGTGA
AGGCCGAGCGATGGAACGGCCGGCACGCCATGTTTGGGTGGATCGCCCTG
TTGGCGACGGGGTACGCCCAGGCGCACGGGCTGCTCCCGGAGGGGGGCAT
GGACGCGAAGGAGTGGGGCACGTGGGTCATCGTCAACACGGACCCTGCCA
CCGGCGCAGTTACCACCATCCCCGCCGCCCGAGCCGCCATCGCCATCGCC
CACCTCCACCTGGGGGCCGTGGGTGTCTTTGCTGCCTACAGCAAGAACAG
CGTCAAGGACAGGCTGCTCTTGGAACCGGGGGAGAAGGACGAGGCTCCTG
CCGGCCTCTTCCCTGCCCTGCGCCCCGGGCTGACCAAGGACGCCGAGATC
CTCAACGGGCGCATCGCCATGCTGGGGCTCATTGCCCTTGTCGCCGTCGC
TGCCGCCACGGGGCAGGACATCCTCTCCGTCATTGACCAGGGTCTGGGGG
GGCTTCTTCTCAAGGCCTGAGCAGGTTCCCAGGGAGGGAAACCCATCAGA
GACTAGGGGGACGGTGCGGCGCAAGTTTAGGTGTGCCCCGAGACCCGGCG
TCCGTTCTTTTCCCTTCCAGTGGTCGGGGATGGAGACGGGCCCGGGGCGA
CGCGTGCGGAGACAAAGGAAGGGTTTGTCCCCCCTCGCCGGTCAACACCC
GCCTGCTGCCCGTGTCATCCTCAGTATCACCCATCCAGTGTGTTCTTTTG
TATTGTCCGCATCGAAAAGAAGCATTCACGCAATAAGCTCGCCCGAGACA
AAAGGT

protein sequence of rna6984

>rna6984-protein ID=rna6984-protein|Name=rna6984|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MTMIACMDTWTSKPSRVCLCRLVSSMSLWQKNRQQEIGCAWEKRHLFPVD
LPPRHRKIISSCSQSNTYRPYIILIFTRGSTIQQLSSLFLFLLGLRPFHT
VIAKWRPSPTTFVKPFSMKRYLTTYPGKTAGASSSRDSPSPGRKKARPTL
AATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEV
VEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMP
FPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLL
FMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVR
AEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLL
LNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFP
SDHFGISCCVRLPPQGGESAEARK

mRNA from alignment at CM002470.1:172845..175643-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6984 ID=rna6984|Name=rna6984|organism=Nannochloropsis gaditana|type=mRNA|length=2799bp|location=Sequence derived from alignment at CM002470.1:172845..175643- (Nannochloropsis gaditana)
GAAGGTATTCTTTGTGTGACAGGATTGATCGAAACCGGACAAGCGAAACG
CTTGGCTCGTCTCGCGTCATCTGTTCGCCGACACTCCCTCTGGGGTCAGG
TAGTGGCGTTATGCATTGGGAAAAAACTTTTTGTATCCGCGGGGTTTTGA
AAATAAGAAGATTTCTCTTCTGGCCGGGGCCGAATGCTAGTTGACCGTGC
AGTAATGCACTAAAAAACCTTGCCACTTGTAGCGAGTGCATGGTCTCCAT
GTCGAAGCCCGATGCGTGTTGTTGCTTCGTTTTCGCAAGCTATTGTGACA
ATCGTCAGGGTGGACGGCACAAATGACGATGATAGCGTGTATGGACACCT
GGACCAGCAAGCCTTCAAGGGTATGCTTGTGCAGGTTGGTTTCCTCAATG
AGCCTTTGGCAGAAAAATCGGCAACAAGAGATCGGCTGTGCATGGGAGAA
GAGGCATCTTTTTCCCGTAGACTTGCCCCCCAGACACAGGAAAATAATCT
CGAGCTGCTCTCAGTCCAACACATACCGTCCTTATATAATTTTGATCTTT
ACAAGGGGGTCGACCATTCAGCAGCTTTCCTCCTTATTTTTATTCCTCCT
GGGTCTGCGTCCCTTCCACACTGTCATCGCCAAGTGGCGCCCTTCGCCCA
CAACATTTGTAAAACCGTTCTCTATGAAACGATACCTGACCACATATCCT
GGCAAAACTGCTGGAGCGAGCAGTTCTCGAGATTCGCCCTCGCCTGGGAG
GAAAAAGGCCCGGCCCACGTTGGCTGCAACCGATTTCCTGCATGTATGTT
CCTACAACGTGGACGGGCTGGACAGCAACCTGCTCCTCCAGCGCGCAGGA
GAGGTGTGTTCTATACTTCTTGAAGAAACACCCGACCGACCTCTACCGGA
TGTGATCTTATTGCAGGAGGTGGTGGAGGCGAACCTCCCTGTTTTTGTCT
CCCGCCTGACCGCAGCGGGCTACGAAGTCGCGCCCCCCCCGAGCGAAAGC
CTTCCCCCCTATTTCACCCTTGCCTTTTTCAAAACGTGTCGCATTCACAT
CACCAGTGCAGTGCGGATGCCCTTTCCGGGCTCTCGTATGGGACGTGACT
TGATCAAAGTTCAAGGAAGACTGAACGAACCGGGAGCCGGCACCCATGCC
CCATCGGCTGCCTCTCTTAATCCCCCATCGGGTTCTGGTCCCCCCGCCCT
TCCTGCCACCGTCGACCTGCTCTTCATGACCGCGCACCTTGAGTCCTTGG
GGGACCCCCTCAGCTCGGAGCAGCGCAGTCATCAACTTGGTCACGTCCTG
GAGACGCTCATAGCCTTCCCCGGGCCGGGCCTGTTCGCCGGCGACACCAA
CCTCCGGGAGAAAGAAGTCCGCGCCGAAGGCCGATACAAGCTGGTAATCG
ACGCCTGGGTGGCCGACGGAAGTCCCAAGACGGCCAATGCCACCTGGGAC
ATGACCGTGAACGACAACAAGAAGATGGAGACGGCGGGATTCAAGCCCCG
GATGCGGTTGGACCGCCTCCTGCTCAATGGAAAGTGGGGCGATCGCGTGG
GAGGCCAAACATTGGAGGGTTCGAAGGGAAAAGGGGGGGCGCGAAGGGAG
AAGGACGGGGAGGGGAGGGTCAAGGGGTGGCGGTTGCTCGGGAGGGAGCG
CATGGCGGAGGGAGTCTTCCCCTCCGACCATTTCGGGATCTCGTGTTGCG
TGCGACTACCCCCCCAGGGGGGGGAGAGCGCGGAGGCAAGGAAATGACGT
TAGGCAAGAGGGACAGGAAATCAAAAAACGGAGGTACCTTTTGTCTCGGG
CGAGCTTATTGCGTGAATGCTTCTTTTCGATGCGGACAATACAAAAGAAC
ACACTGGATGGGTGATACTGAGGATGACACGGGCAGCAGGCGGGTGTTGA
CCGGCGAGGGGGGACAAACCCTTCCTTTGTCTCCGCACGCGTCGCCCCGG
GCCCGTCTCCATCCCCGACCACTGGAAGGGAAAAGAACGGACGCCGGGTC
TCGGGGCACACCTAAACTTGCGCCGCACCGTCCCCCTAGTCTCTGATGGG
TTTCCCTCCCTGGGAACCTGCTCAGGCCTTGAGAAGAAGCCCCCCCAGAC
CCTGGTCAATGACGGAGAGGATGTCCTGCCCCGTGGCGGCAGCGACGGCG
ACAAGGGCAATGAGCCCCAGCATGGCGATGCGCCCTGTGCATGGGGGGAG
GTGAATAAACCAGGGTTTGGGTAGGGACAGGAAGGTGTGTGGGCCAAGGG
CAGCTCGTGACAGGACGTGCGCATGGAAGGTCGATAATAACCGAGGAGAT
ATCGCGAAAGGGAGGTGTGTGCGGTAAGGGGGAGAGAGCTTGTACGGGAC
AAGAGCCAGAGAACAACCCGCGCTTCCGGGGTTTCCCCGTCGTAAAGCCA
AGGAGGACTCCAGTCCCTAATCCCTTTCCACACGCCGTGATCCTACCCTC
CTTCGACCCCGCCACCCCACGGCCGCCCTCCGCACGCACCGTTGAGGATC
TCGGCGTCCTTGGTCAGCCCGGGGCGCAGGGCAGGGAAGAGGCCGGCAGG
AGCCTCGTCCTTCTCCCCCGGTTCCAAGAGCAGCCTGTCCTTGACGCTGT
TCTTGCTGTAGGCAGCAAAGACACCCACGGCCCCCAGGTGGAGGTGGGCG
ATGGCGATGGCGGCTCGGGCGGCGGGGATGGTGGTAACTGCGCCGGTGGC
AGGGTCCGTGTTGACGATGACCCACTGGGAAAAGGGGGAAACGGGAGAAC
GCCCGAGGGCTTCGTGAGCCACACACACACGCCTCTTCCAACCACGCAC

Coding sequence (CDS) from alignment at CM002470.1:172845..175643-

>rna6984 ID=rna6984|Name=rna6984|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002470.1:172845..175643- (Nannochloropsis gaditana)
ATGACGATGATAGCGTGTATGGACACCTGGACCAGCAAGCCTTCAAGGGT
ATGCTTGTGCAGGTTGGTTTCCTCAATGAGCCTTTGGCAGAAAAATCGGC
AACAAGAGATCGGCTGTGCATGGGAGAAGAGGCATCTTTTTCCCGTAGAC
TTGCCCCCCAGACACAGGAAAATAATCTCGAGCTGCTCTCAGTCCAACAC
ATACCGTCCTTATATAATTTTGATCTTTACAAGGGGGTCGACCATTCAGC
AGCTTTCCTCCTTATTTTTATTCCTCCTGGGTCTGCGTCCCTTCCACACT
GTCATCGCCAAGTGGCGCCCTTCGCCCACAACATTTGTAAAACCGTTCTC
TATGAAACGATACCTGACCACATATCCTGGCAAAACTGCTGGAGCGAGCA
GTTCTCGAGATTCGCCCTCGCCTGGGAGGAAAAAGGCCCGGCCCACGTTG
GCTGCAACCGATTTCCTGCATGTATGTTCCTACAACGTGGACGGGCTGGA
CAGCAACCTGCTCCTCCAGCGCGCAGGAGAGGTGTGTTCTATACTTCTTG
AAGAAACACCCGACCGACCTCTACCGGATGTGATCTTATTGCAGGAGGTG
GTGGAGGCGAACCTCCCTGTTTTTGTCTCCCGCCTGACCGCAGCGGGCTA
CGAAGTCGCGCCCCCCCCGAGCGAAAGCCTTCCCCCCTATTTCACCCTTG
CCTTTTTCAAAACGTGTCGCATTCACATCACCAGTGCAGTGCGGATGCCC
TTTCCGGGCTCTCGTATGGGACGTGACTTGATCAAAGTTCAAGGAAGACT
GAACGAACCGGGAGCCGGCACCCATGCCCCATCGGCTGCCTCTCTTAATC
CCCCATCGGGTTCTGGTCCCCCCGCCCTTCCTGCCACCGTCGACCTGCTC
TTCATGACCGCGCACCTTGAGTCCTTGGGGGACCCCCTCAGCTCGGAGCA
GCGCAGTCATCAACTTGGTCACGTCCTGGAGACGCTCATAGCCTTCCCCG
GGCCGGGCCTGTTCGCCGGCGACACCAACCTCCGGGAGAAAGAAGTCCGC
GCCGAAGGCCGATACAAGCTGGTAATCGACGCCTGGGTGGCCGACGGAAG
TCCCAAGACGGCCAATGCCACCTGGGACATGACCGTGAACGACAACAAGA
AGATGGAGACGGCGGGATTCAAGCCCCGGATGCGGTTGGACCGCCTCCTG
CTCAATGGAAAGTGGGGCGATCGCGTGGGAGGCCAAACATTGGAGGGTTC
GAAGGGAAAAGGGGGGGCGCGAAGGGAGAAGGACGGGGAGGGGAGGGTCA
AGGGGTGGCGGTTGCTCGGGAGGGAGCGCATGGCGGAGGGAGTCTTCCCC
TCCGACCATTTCGGGATCTCGTGTTGCGTGCGACTACCCCCCCAGGGGGG
GGAGAGCGCGGAGGCAAGGAAATGA

Synonyms

Publications