EWM23687.1, cds6968 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|585104841|gb|EWM23687.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 975.311 bits (2520), Expect = 0.000e+0 Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0
Query: 1 MTMIACMDTWTSKPSRVCLCRLVSSMSLWQKNRQQEIGCAWEKRHLFPVDLPPRHRKIISSCSQSNTYRPYIILIFTRGSTIQQLSSLFLFLLGLRPFHTVIAKWRPSPTTFVKPFSMKRYLTTYPGKTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISCCVRLPPQGGESAEARK 474
MTMIACMDTWTSKPSRVCLCRLVSSMSLWQKNRQQEIGCAWEKRHLFPVDLPPRHRKIISSCSQSNTYRPYIILIFTRGSTIQQLSSLFLFLLGLRPFHTVIAKWRPSPTTFVKPFSMKRYLTTYPGKTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISCCVRLPPQGGESAEARK
Sbjct: 1 MTMIACMDTWTSKPSRVCLCRLVSSMSLWQKNRQQEIGCAWEKRHLFPVDLPPRHRKIISSCSQSNTYRPYIILIFTRGSTIQQLSSLFLFLLGLRPFHTVIAKWRPSPTTFVKPFSMKRYLTTYPGKTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISCCVRLPPQGGESAEARK 474
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|298715627|emb|CBJ28153.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 132.88 bits (333), Expect = 1.164e-32 Identity = 92/229 (40.17%), Postives = 111/229 (48.47%), Query Frame = 0
Query: 172 LQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAG-YEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPG-PGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDR 398
+ R EVC+ILLE P PDVILLQEV + V +RL G Y PP YFTL F K + + + R FP S MGRDL V+ N G P +L MT+HLES + SSE+R Q V++ L+AF G P +FAGDTNLRE EV+ E K D W G+ TWDM NDN GF+PR R DR
Sbjct: 1 MARVEEVCAILLE---SEPTPDVILLQEVDDEMFAVLNARLGGGGRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRATFN--------------------GKP-------MLLMTSHLES--EKQSSEERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPERRFTWDMANNDNLVF-GGGFQPRARYDR 196
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|291224336|ref|XP_002732161.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2-like [Saccoglossus kowalevskii]) HSP 1 Score: 124.405 bits (311), Expect = 4.359e-28 Identity = 92/307 (29.97%), Postives = 138/307 (44.95%), Query Frame = 0
Query: 155 FLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEVRAEGRYKLVI-DAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
L + ++N+DGLD+ + +R VCSI+ E+ PDV+ LQEV+ ++ + + Y P SE YFT + RI + + + FP ++M R+L+ V+ R + +DLL MT+H+ES+ + S +R QL VL+ + +F GDTNLR+ E+ G I D W GSP+ A +WD+T NDN M FKP+ R DRL L ++ Q + +G ER+ G F SDH+GI C
Sbjct: 102 MLKLLTWNIDGLDNKNITERTKTVCSIIKRES-----PDVVYLQEVIVETFA-YIETMCSPTYIAIPANSEQ---YFTTILLRKSRISLLAHKIIEFPTTKMYRNLLTVKARFRD---------------------------IDLLLMTSHMESMKN--HSHERKTQLTTVLKHMSEADAATAVIFGGDTNLRDYEITQIGGLPDSIGDVWQMCGSPEDAQFSWDITKNDNLDMP---FKPKCRFDRLFLRQGCSSKLLPQM----------------------FMFVGTERLPCGRFASDHWGILC 345
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|1002590354|ref|XP_015673866.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Protobothrops mucrosquamatus]) HSP 1 Score: 123.25 bits (308), Expect = 4.749e-28 Identity = 100/306 (32.68%), Postives = 140/306 (45.75%), Query Frame = 0
Query: 158 VCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLT--AAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
+ ++N+DGLDSN L +RA VCS L +PD V+ LQEV+ PV++S L A Y + P ++ YFT K R+ + FP + M R+L+ V + SG+ DL MT+HLES D SE+R QL VL + P +F GDTNLR+KEV + G ++D W G P+ + TWD + N+N A +K + R DRL G GGQ + S L+G E++ G FPSDH+G+ C
Sbjct: 61 LITWNIDGLDSNNLQERARGVCSYLALYSPD-----VVFLQEVI----PVYLSYLQKRAVSYTIIPGNTDG---YFTAIMLKKSRVKVLKHEITAFPTTSMMRNLLAVYVNI------------------SGN---------DLCLMTSHLESTKD--HSEERLKQLKLVLAKMAEVPKSSSVIFGGDTNLRDKEVAKMGGLPNNILDIWEFLGKPEHCHYTWDTSQNNNLN---ARYKCKSRFDRLFFRGA---TAGGQIIPQS------------------LDLIGLEKLDCGRFPSDHWGLFC 301
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|555982603|ref|XP_005903207.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Bos mutus] >gi|440899737|gb|ELR50998.1| Tyrosyl-DNA phosphodiesterase 2 [Bos mutus]) HSP 1 Score: 118.627 bits (296), Expect = 6.585e-26 Identity = 102/337 (30.27%), Postives = 153/337 (45.40%), Query Frame = 0
Query: 128 KTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLT--AAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKW-GDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
+T + SS+ S S + + + F+ ++N+DGLD N LL+RA VCS L +PD VI LQEV+ P + + L A+ Y++ E YFT K R+ S +PFP ++M R+L+ V HA + + +L MT+HLES +++R +QL VLE + PG +FAGDTNLR++EV + G ++D W G PK TWD +N N + ++R DR+ G + Q+L+ LLG E++ G FPSDH+G+ C
Sbjct: 91 ETNDSISSKTSTSEDKSVQQEDGSVFSFI---TWNIDGLDMNNLLERARGVCSYLTLYSPD-----VIFLQEVI----PPYYAYLKKKASSYKIITGREEG---YFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCV-----------HASVSGN----------------ELCLMTSHLESTRG--HAKERMNQLKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAA---NCKLRFDRIFFRAAAEGGHIIPQSLD----------------------LLGLEKLDCGRFPSDHWGLLC 358
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|1191066312|ref|XP_020911641.1| (tyrosyl-DNA phosphodiesterase 2-like [Exaiptasia pallida] >gi|999990308|gb|KXJ29334.1| Tyrosyl-DNA phosphodiesterase 2 [Exaiptasia pallida]) HSP 1 Score: 116.701 bits (291), Expect = 2.017e-25 Identity = 102/357 (28.57%), Postives = 151/357 (42.30%), Query Frame = 0
Query: 117 SMKRYLTTYP---GKTAGASSSRDSPSPGRKKARPTLAAT---------DFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMP-FPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
++ +YL P G T DSP + + AT D L + S+N+DGLD N +R V S++ DR PDV+ LQEV++ +F S+L E + + YF + I T+ + F S+MGR ++ + P L + L+ MT+HLES + + ++R QL V + G +F GDTNLR+KEV+ G + D W A GS T TWD + NDN ME +K ++R DR+ R+ + + L+G+ER+A G FPSDH+GI C
Sbjct: 43 ALDKYLYAKPDDMGTTGNPIEILDSPEKPPVQQSSVMQATSQDSQINTSDNLKLLSWNIDGLDGNQTRERTRYVISLI----KDRQ-PDVVFLQEVIDGTFQIFESQLQ----EYMVLRAYTGVAYFNAMLLRKTTIKPTTEFQCKLFMTSKMGRHIL--------------------------TQPALLYDKIKLVLMTSHLESTKNCV--QERKKQLKEVYTEISXQDGEEFVIFGGDTNLRDKEVQDVGLPWRIDDLWEACGSNITTKYTWDTSKNDNLGME---WKCKLRFDRIYY----------------------RKNNNISLNPACFTLVGQERLASGCFPSDHWGIWC 337
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|504166666|ref|XP_004593173.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Ochotona princeps]) HSP 1 Score: 115.161 bits (287), Expect = 2.115e-25 Identity = 103/341 (30.21%), Postives = 148/341 (43.40%), Query Frame = 0
Query: 128 KTAGASSSRDSPSPGRKKARPTLAATD---FLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLT--AAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRV--KGWRLLGRERMAEGVFPSDHFGISC 458
++ +S S S K +R + + ++N+DGLD N L +RA VCS L +PD VI LQEV+ P + S L A YE+ E YFT K R+ + S +PFP ++M R+L+ VQ L SG+ +L MT+HLES + +R +QL VL+ + P +FAGDTNLR++EV + G ++D W G PK TWD VN N + ++R DR+ R EG + + LLG E++ G FPSDH+G+ C
Sbjct: 6 RSVDLTSEETSDSISSKTSRSETTVQEDGSMFSLITWNIDGLDLNHLQERAQGVCSYLALYSPD-----VIFLQEVI----PPYYSYLKKRARDYEIIAGNEEG---YFTAIMLKKSRVKLKSQEIIPFPNTKMMRNLLCVQVSL------------------SGN---------ELYLMTSHLESTRG--HAVERMNQLKVVLQKIQEAPKSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTRVNSNLGIAAPC---KLRFDRIFF-----------------------RAAADEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 279
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|557017698|ref|XP_006009252.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 isoform X2 [Latimeria chalumnae]) HSP 1 Score: 115.546 bits (288), Expect = 2.577e-25 Identity = 94/302 (31.13%), Postives = 137/302 (45.36%), Query Frame = 0
Query: 160 SYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
++N+DGLD + +RA VCS L + PDV+ LQEVV L R A Y + E YFT K R+ + + FP + M R+L+ V ++ SGS ++ MT+HLES SE+R QL VL+ + A PG +F GDTNLR+KEV + G + D W G P+ ++ TWD T+N+N A +K ++R DR+ + GGQ + + L+G +++ G FPSDH+GI C
Sbjct: 54 TWNIDGLDGENVRERAKAVCSTLALYS-----PDVVFLQEVVPPYLIYLRKR--AVSYTIIAGNEEG---YFTAIMLKKTRVKLLNQEITSFPTTTMLRNLLTVHVKI------------------SGS---------EIYLMTSHLESTKQ--RSEERLKQLKTVLKNMKAAPGSATVIFGGDTNLRDKEVAKLGGLPGDISDIWELLGKPEHSHYTWDTTINNNLN---AHYKCKLRFDRIFFRAA---KEGGQVVP------------------QDMNLIGLDKLDCGRFPSDHWGIFC 292
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|602630164|ref|XP_007422000.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Python bivittatus]) HSP 1 Score: 115.931 bits (289), Expect = 6.000e-25 Identity = 97/306 (31.70%), Postives = 138/306 (45.10%), Query Frame = 0
Query: 158 VCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLT--AAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
+ ++N+DGLDSN L +RA VCS + +PD V+ LQEV+ P + S L A Y + P ++ YFT K R+ + FP + M R+L+ V + SG+ DL MT+HLES D SE+R QL VL + P +F GDTNLR+KEV + G ++D W G P+ + TWD + N N + +K + R DRL + G GGQ + S L+G E++ G FPSDH+G+ C
Sbjct: 128 LITWNIDGLDSNNLQERARGVCSYIALYSPD-----VVFLQEVI----PPYFSYLQKRAVSYTIIPG---NMDNYFTAIMLKKSRVKVLKHEITAFPTTSMLRNLLAVYVTI------------------SGN---------DLCLMTSHLESTKD--HSEERLKQLRLVLAKMAEVPESSTVIFGGDTNLRDKEVAKIGGLPNNILDIWEFLGKPEHCHYTWDTSQNTNLNVR---YKCKTRFDRLFMRGA---TTGGQIIPQSLD------------------LIGLEKLDCGRFPSDHWGLLC 368
BLAST of EWM23687.1 vs. NCBI_GenBank
Match: gi|557017696|ref|XP_006009251.1| (PREDICTED: tyrosyl-DNA phosphodiesterase 2 isoform X1 [Latimeria chalumnae]) HSP 1 Score: 114.775 bits (286), Expect = 1.355e-24 Identity = 94/302 (31.13%), Postives = 137/302 (45.36%), Query Frame = 0
Query: 160 SYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPG--LFAGDTNLREKEV-RAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISC 458
++N+DGLD + +RA VCS L + PDV+ LQEVV L R A Y + E YFT K R+ + + FP + M R+L+ V ++ SGS ++ MT+HLES SE+R QL VL+ + A PG +F GDTNLR+KEV + G + D W G P+ ++ TWD T+N+N A +K ++R DR+ + GGQ + + L+G +++ G FPSDH+GI C
Sbjct: 122 TWNIDGLDGENVRERAKAVCSTLALYS-----PDVVFLQEVVPPYLIYLRKR--AVSYTIIAGNEEG---YFTAIMLKKTRVKLLNQEITSFPTTTMLRNLLTVHVKI------------------SGS---------EIYLMTSHLESTKQ--RSEERLKQLKTVLKNMKAAPGSATVIFGGDTNLRDKEVAKLGGLPGDISDIWELLGKPEHSHYTWDTTINNNLN---AHYKCKLRFDRIFFRAA---KEGGQVVP------------------QDMNLIGLDKLDCGRFPSDHWGIFC 360 The following BLAST results are available for this feature:
BLAST of EWM23687.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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