rna6983, rna6983 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6983
Unique Name	rna6983
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	CM002470.1:171984..173858 +

Link to JBrowse

Properties


Property Name	Value
Product	Chlorophyll A-B binding protein
Orig transcript id	gnl\|cribi\|Naga_100030g5.4206.mrna
Orig protein id	gnl\|cribi\|Naga_100030g5.4206
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:171984..173858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g5	gene6749	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6983	rna6983-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23709.1	cds6967	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:171984..173858+
coding sequence from alignment at CM002470.1:171984..173858+

mRNA sequence

>rna6983 ID=rna6983|Name=rna6983|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGCCGGAAGACGTGGAGGTTTCCTGGTACGAGGACATGTTCGATTGGGC
AAACGTGGTACCTTGCATTGCCATGGATGGTGTTGCTACAGTCACAGGGA
TCGCCTCGTCCTCCCTCGTGCCTCTTCAACAGGTGGCTGGTTGCTTTCTC
GGGAAAGTATGCGTCCGCCGCGCCCACAAATCCGTCAAGTGGGCGGCGGC
AACTCCCCAGGAGTGGTTCCGGAACCTTCCCCCCATCACGAAGGCCTACC
TCGTCGCCGCCTTTGCCTCCACGATCCTCTCCCACTTTGGCGTCGTAGGT
GTACGCACCCTGGTCTGGGACGTGGCGGGGCTGAAACGCTTTCAGCTCTG
GCGCCTGATCACCCCCTTCACCTATTTCGGGGATCTTGGCATGCAATTTG
TGATGCAACTCTTCATGCTCGTCCAGTACTCGAGCCGCTACGAGCTCTCC
CCCTTCAACACGGGCGGGGGTGGTTCCTCGGCGGACTACCTGCTCATGCT
CGTCTTCGGCGCGGCCGCCCTCCTCCTCCTGAACTGCTACCTCGGGTACT
ACGTGCTCGGCGGCAGCCTGGTCAGCATGGTCACCTACCTCTGGTCCTGC
CGGGAGCCCCACGCGCTCGTCTCCTTCTGGGGCTTCACGCTCCCGGCCAT
GTACCTGCCGTGGGCCCTGGCCGCCCTCTCCTTCCTGATGGGGGGCACCT
CGGCGATGATCAGCCCCCTGATGGGCATCGGCGTCGGGCATCTGTACTAC
TTCCTGATCGAGACCTTGCCTTTGGAGTACGATGTGGACCTGCTCAAGAC
CCCAGGGTTCTTCGTGGAGGCCTTCGAGGGACCGGGGGAGAGAAGGGGAG
GGCGGGGGGAGGCTGCGGGGCCGGAGGGGGCAGGACAAAGCGACTGGGGT
ACAGGAGGGCGAGTCTTAGGGGGGGGGTAA

protein sequence of rna6983

>rna6983-protein ID=rna6983-protein|Name=rna6983|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTH
PIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVE
NKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIAL
LATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIA
HLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEI
LNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA

mRNA from alignment at CM002470.1:171984..173858+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6983 ID=rna6983|Name=rna6983|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002470.1:171984..173858+ (Nannochloropsis gaditana)
ATGCATGCTGATGTGGAGAGTCCAAAGTGCAACGGGTCTCACTGCGCGAG
CCGCTCCCTGTTCTTCGAACGGGGTTGGACTTTTCCCCTTTTACCGACAG
GCATTCACTTTCTAAGCACTCATTTTTCTTGTCTTTTCTTCAGCACACAT
CCTATATTTCTGACCATGAAGACGGCAGCGATTTTCTCCCTGTTGGCTGT
TGCCGCCAACGCCTTTGTGCTCCCTACTCCCAAAGCTCCCCAGGTAAGAT
CAAGAGAAGACATACGGCCTCTGACGTCCGGGAAAGTTTCCAGCGCTTTT
ACGCATGAAACATCGGTGGCTTTGTACCTGGCAGTCATTTTCTTATGGGA
CAATTCAAGACCTTTTTCCCCCGAAACGTCGGCTTGTTTCACGTGAAAGC
ACTGCGTGACGTACAAAGCAGATCTAGTCACTCTCACGCGTTTTGTTTGC
GTCTCAACATGTCGTCAAAGCCAATCACTGCTTTCAGTTCCCACCACGAA
CCCAATTGCACATCCCCGTTtgcatttttctttcctttttacTCAGACTG
TCGTGAAGGGGACTCCCTTCGATACCGTTGACAAGGCGGAAATGGCGGTG
GAGAACAAGGCCCTGTCCGGCATGAGCGTCTTTGAGCGCGCCATGGCCGA
TTTCAACGGCCGCTACCCCGCCGTGGCCGCGTTGGGCTTGGGCCCGAGCG
TGAAGGCCGAGCGATGGAACGGCCGGCACGCCATGTTTGGGTGGATCGCC
CTGTTGGCGACGGGGTACGCCCAGGCGCACGGGCTGCTcccggagggggg
catggacGCGAAGGAGTGGGGCACGGTGGGTtgagaggggggggtggcCC
GGCAATGGCGTGTGCGTGGTTGGAAGAGGCGTGTGTGTGTGGCTCACGAA
GCCCTCGGGCGTTCTCCcgtttcccccttttcccagTGGGTCATCGTCAA
CACGGACCCTGCCACCGGCGCAGTTACCACCATCCCCGCCGCCCGagccg
ccatcgccatcgcccacctccacctggGGGCCGTGGGTGTCTTTGCTGCC
TACAGCAAGAACAGCGTCAAGGACAGGCTGCTCTTGGAaccgggggagaa
ggacgaggctCCTGCCGgcctcttccctgccctgcGCCCCGGGCTGACCA
AGGACGCCGAGATCCTCAACGGTGCGTGCGGAGGGCGGCCGTGGGGTGGc
ggggtcgaaggagggTAGGATCACGGCGTGTGGAAAGGGATTAGGGACTG
GAGTCCTCCTTGGCTTTACGACGGGGAAACCCCGGAAGCGCGGGTTGTTC
TCTGGCTCTTGTCCCGTACAAGCTCTCTCCCCCTTACCGCACACACCTCC
CTTTCGCGATATCTCCTCGGTTATTATCGACCTTCCATGCGCACGTCCTG
TCACGAGCTGCCCTTGGCCCACACACCTTCCTGTCCCTACCCAAACCCTG
GTTTATTCACCTCCCCCCATGCACAGGGCGCATCGCCATGCTGGGGCTCA
TTGCCCTTGTCGCCGTCGCTGCCGCCACGGGGCAGGACATCCTCTCCGTC
ATTGACCAGGGTCTGGGGGGGCTTCTTCTCAAGGCCTGAGCAGGTtccca
gggagggaaacccATCAGAGACTAGGGGGACGGTGCGGCGCAAGTTTAGG
TGTGCCCCGAGACCCGGCGTCcgttcttttcccttccagTGGTCGGGGAT
GGAGACGGGCCCGGGGCGACGCGTGCGGAGACAAAGGAAGGGTTTGTCCC
CCCTCGCCGGTCAACACCCGCCTGCTGCCCGTGTCATCCTCAGTATCACC
CATCCAGTGTGTTCTTTTGTATTGTCCGCATCGAAAAGAAGCATTCACGC
AATAAGCTCGCCCGAGACAAAAGGT

Coding sequence (CDS) from alignment at CM002470.1:171984..173858+

>rna6983 ID=rna6983|Name=rna6983|organism=Nannochloropsis gaditana|type=CDS|length=3480bp|location=Sequence derived from alignment at CM002470.1:171984..173858+ (Nannochloropsis gaditana)
ATGCATGCTGATGTGGAGAGTCCAAAGTGCAACGGGTCTCACTGCGCGAG
CCGCTCCCTGTTCTTCGAACGGGGTTGGACTTTTCCCCTTTTACCGACAG
GCATTCACTTTCTAAGCACTCATTTTTCTTGTCTTTTCTTCAGCACACAT
CCTATATTTCTGACCATGAAGACGGCAGCGATTTTCTCCCTGTTGGCTGT
TGCCGCCAACGCCTTTGTGCTCCCTACTCCCAAAGCTCCCCAGACTGTCG
TGAAGGGGACTCCCTTCGATACCGTTGACAAGGCGGAAATGGCGGTGGAG
AACAAGGCCCTGTCCGGCATGAGCGTCTTTGAGCGCGCCATGGCCGATTT
CAACGGCCGCTACCCCGCCGTGGCCGCGTTGGGCTTGGGCCCGAGCGTGA
AGGCCGAGCGATGGAACGGCCGGCACGCCATGTTTGGGTGGATCGCCCTG
TTGGCGACGGGGTACGCCCAGGCGCACGGGCTGCTcccggaggggggcat
ggacGCGAAGGAGTGGGGCACGTGGGTCATCGTCAACACGGACCCTGCCA
CCGGCGCAGTTACCACCATCCCCGCCGCCCGagccgccatcgccatcgcc
cacctccacctggGGGCCGTGGGTGTCTTTGCTGCCTACAGCAAGAACAG
CGTCAAGGACAGGCTGCTCTTGGAaccgggggagaaggacgaggctCCTG
CCGgcctcttccctgccctgcGCCCCGGGCTGACCAAGGACGCCGAGATC
CTCAACGGGCGCATCGCCATGCTGGGGCTCATTGCCCTTGTCGCCGTCGC
TGCCGCCACGGGGCAGGACATCCTCTCCGTCATTGACCAGGGTCTGGGGG
GGCTTCTTCTCAAGGCCTGAATGCATGCTGATGTGGAGAGTCCAAAGTGC
AACGGGTCTCACTGCGCGAGCCGCTCCCTGTTCTTCGAACGGGGTTGGAC
TTTTCCCCTTTTACCGACAGGCATTCACTTTCTAAGCACTCATTTTTCTT
GTCTTTTCTTCAGCACACATCCTATATTTCTGACCATGAAGACGGCAGCG
ATTTTCTCCCTGTTGGCTGTTGCCGCCAACGCCTTTGTGCTCCCTACTCC
CAAAGCTCCCCAGACTGTCGTGAAGGGGACTCCCTTCGATACCGTTGACA
AGGCGGAAATGGCGGTGGAGAACAAGGCCCTGTCCGGCATGAGCGTCTTT
GAGCGCGCCATGGCCGATTTCAACGGCCGCTACCCCGCCGTGGCCGCGTT
GGGCTTGGGCCCGAGCGTGAAGGCCGAGCGATGGAACGGCCGGCACGCCA
TGTTTGGGTGGATCGCCCTGTTGGCGACGGGGTACGCCCAGGCGCACGGG
CTGCTcccggaggggggcatggacGCGAAGGAGTGGGGCACGTGGGTCAT
CGTCAACACGGACCCTGCCACCGGCGCAGTTACCACCATCCCCGCCGCCC
GagccgccatcgccatcgcccacctccacctggGGGCCGTGGGTGTCTTT
GCTGCCTACAGCAAGAACAGCGTCAAGGACAGGCTGCTCTTGGAaccggg
ggagaaggacgaggctCCTGCCGgcctcttccctgccctgcGCCCCGGGC
TGACCAAGGACGCCGAGATCCTCAACGGGCGCATCGCCATGCTGGGGCTC
ATTGCCCTTGTCGCCGTCGCTGCCGCCACGGGGCAGGACATCCTCTCCGT
CATTGACCAGGGTCTGGGGGGGCTTCTTCTCAAGGCCTGAATGCATGCTG
ATGTGGAGAGTCCAAAGTGCAACGGGTCTCACTGCGCGAGCCGCTCCCTG
TTCTTCGAACGGGGTTGGACTTTTCCCCTTTTACCGACAGGCATTCACTT
TCTAAGCACTCATTTTTCTTGTCTTTTCTTCAGCACACATCCTATATTTC
TGACCATGAAGACGGCAGCGATTTTCTCCCTGTTGGCTGTTGCCGCCAAC
GCCTTTGTGCTCCCTACTCCCAAAGCTCCCCAGACTGTCGTGAAGGGGAC
TCCCTTCGATACCGTTGACAAGGCGGAAATGGCGGTGGAGAACAAGGCCC
TGTCCGGCATGAGCGTCTTTGAGCGCGCCATGGCCGATTTCAACGGCCGC
TACCCCGCCGTGGCCGCGTTGGGCTTGGGCCCGAGCGTGAAGGCCGAGCG
ATGGAACGGCCGGCACGCCATGTTTGGGTGGATCGCCCTGTTGGCGACGG
GGTACGCCCAGGCGCACGGGCTGCTcccggaggggggcatggacGCGAAG
GAGTGGGGCACGTGGGTCATCGTCAACACGGACCCTGCCACCGGCGCAGT
TACCACCATCCCCGCCGCCCGagccgccatcgccatcgcccacctccacc
tggGGGCCGTGGGTGTCTTTGCTGCCTACAGCAAGAACAGCGTCAAGGAC
AGGCTGCTCTTGGAaccgggggagaaggacgaggctCCTGCCGgcctctt
ccctgccctgcGCCCCGGGCTGACCAAGGACGCCGAGATCCTCAACGGGC
GCATCGCCATGCTGGGGCTCATTGCCCTTGTCGCCGTCGCTGCCGCCACG
GGGCAGGACATCCTCTCCGTCATTGACCAGGGTCTGGGGGGGCTTCTTCT
CAAGGCCTGAATGCATGCTGATGTGGAGAGTCCAAAGTGCAACGGGTCTC
ACTGCGCGAGCCGCTCCCTGTTCTTCGAACGGGGTTGGACTTTTCCCCTT
TTACCGACAGGCATTCACTTTCTAAGCACTCATTTTTCTTGTCTTTTCTT
CAGCACACATCCTATATTTCTGACCATGAAGACGGCAGCGATTTTCTCCC
TGTTGGCTGTTGCCGCCAACGCCTTTGTGCTCCCTACTCCCAAAGCTCCC
CAGACTGTCGTGAAGGGGACTCCCTTCGATACCGTTGACAAGGCGGAAAT
GGCGGTGGAGAACAAGGCCCTGTCCGGCATGAGCGTCTTTGAGCGCGCCA
TGGCCGATTTCAACGGCCGCTACCCCGCCGTGGCCGCGTTGGGCTTGGGC
CCGAGCGTGAAGGCCGAGCGATGGAACGGCCGGCACGCCATGTTTGGGTG
GATCGCCCTGTTGGCGACGGGGTACGCCCAGGCGCACGGGCTGCTcccgg
aggggggcatggacGCGAAGGAGTGGGGCACGTGGGTCATCGTCAACACG
GACCCTGCCACCGGCGCAGTTACCACCATCCCCGCCGCCCGagccgccat
cgccatcgcccacctccacctggGGGCCGTGGGTGTCTTTGCTGCCTACA
GCAAGAACAGCGTCAAGGACAGGCTGCTCTTGGAaccgggggagaaggac
gaggctCCTGCCGgcctcttccctgccctgcGCCCCGGGCTGACCAAGGA
CGCCGAGATCCTCAACGGGCGCATCGCCATGCTGGGGCTCATTGCCCTTG
TCGCCGTCGCTGCCGCCACGGGGCAGGACATCCTCTCCGTCATTGACCAG
GGTCTGGGGGGGCTTCTTCTCAAGGCCTGA

Synonyms

Publications