EWM23709.1, cds6967 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|585104863|gb|EWM23709.1| (Chlorophyll A-B binding protein [Nannochloropsis gaditana]) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query: 1 MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA 289
MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA
Sbjct: 1 MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA 289
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|545703658|ref|XP_005704154.1| (hypothetical protein Gasu_47790 [Galdieria sulphuraria] >gi|452820594|gb|EME27634.1| hypothetical protein Gasu_47790 [Galdieria sulphuraria]) HSP 1 Score: 174.866 bits (442), Expect = 1.870e-50 Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 0
Query: 104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLL 286
+ + +F +AM DF YP + GLG + KAERWNGRHAMFG +A++ TGYA+ HG +P +D ++WGT V+ G I RA + +AH+H+ V + AA + S +DRLLL PGEKDE PAGL P + GLTK+AE+ NGR+AMLG+ +VA + TGQ IL V+++GLG +L
Sbjct: 40 MQQLGIFRQAMKDFASEYPDFVSRGLGVTSKAERWNGRHAMFGLLAIVLTGYAKGHGWIPNADQVLDMQQWGTLVM------EGFNQKITNERAIVLVAHIHVLLVSIAAAIAPFSFQDRLLLRPGEKDEEPAGLLPPFKLGLTKEAELWNGRLAMLGVTFIVATSIITGQSILDVVNKGLGNIL 218
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1189387379|gb|OSX74445.1| (hypothetical protein BU14_0289s0024 [Porphyra umbilicalis]) HSP 1 Score: 172.94 bits (437), Expect = 1.101e-49 Identity = 93/186 (50.00%), Postives = 116/186 (62.37%), Query Frame = 0
Query: 104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
+ + VF +AM +F YP A G G +VKAERWNGRH M GW+ L+ATGYA+ HGL+PE +D K+WGT A G I RA I IAH+HL V V AA + +D+LLL PGE+D+APAGL P + PGL K AE NGR+AMLGL+ LV + AT IL ++ GLG LL
Sbjct: 44 MQQLPVFTQAMDEFKKEYPDFAKRGWGATVKAERWNGRHVMAGWVILVATGYAKGHGLIPEASSLLDLKQWGTLA------ALGNQQPISNERAIILIAHVHLLFVSVAAALAPFPFQDKLLLAPGEEDDAPAGLIPPMAPGLNKTAETWNGRVAMLGLLVLVCTSVATKTPILDTLNAGLGNLLF 223
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|922854142|gb|KOO22702.1| (low molecular mass early light-inducible protein hv60 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 171.014 bits (432), Expect = 4.538e-49 Identity = 94/192 (48.96%), Postives = 122/192 (63.54%), Query Frame = 0
Query: 98 AVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
AV+ A M+VFE M F G +P +A G GP+VKAERWNGRHAMFGW+ ++ATGYA++HGL+P G + K+WG + + I RA I + H+H AV AA+ + D L L GE DE P GLF L GLT AE+LNGR+AMLGLIA+V+ + A+G DIL V++ G+GGLLL
Sbjct: 21 AVKQTAAPQMTVFENGMQQFKGDFPWLAKYGFGPTVKAERWNGRHAMFGWVMIVATGYAKSHGLIPSGDVALQYKDWGGLAQLGLN------QYISTERAVIMMVHVHALAVSAAAAFGPQVLGDTLTLLDGETDEEPYGLFVPLESGLTPAAEMLNGRLAMLGLIAVVSASMASGMDILEVVNIGVGGLLL 206
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1189381685|gb|OSX69387.1| (hypothetical protein BU14_1564s0002 [Porphyra umbilicalis]) HSP 1 Score: 171.4 bits (433), Expect = 5.499e-49 Identity = 91/186 (48.92%), Postives = 118/186 (63.44%), Query Frame = 0
Query: 104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
+ + VF RAM +F YP A G G +VKAERWNGRH M GW+ L+ATGYA+ HGL+P+ ++ KEWGT A G I RA I IAH+HL V V AA + + +D+LLL PGE+D+ PAGL P L+ GL K+AE NGR+AMLGL+ LV + AT +L +++GLG LL
Sbjct: 44 MQQLPVFTRAMDEFKNEYPDFAKRGWGATVKAERWNGRHVMAGWVILVATGYAKGHGLIPDASSLLNLKEWGTLA------ALGNQQPITNERAIILIAHVHLLFVSVAAALAPFAFQDKLLLAPGEQDDKPAGLIPPLQFGLNKNAETWNGRVAMLGLLVLVGSSVATKTPVLDTLNKGLGNLLF 223
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|32394636|gb|AAM94016.1| (low molecular mass early light-inducible protein HV60 [Griffithsia japonica]) HSP 1 Score: 168.703 bits (426), Expect = 1.615e-48 Identity = 87/179 (48.60%), Postives = 112/179 (62.57%), Query Frame = 0
Query: 110 FERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLL 286
F +AM D+ +P+ A G G +VKAERWNGRH MFGW+ T Y + HGLLP+ +D +WG + G T I RA + +AH+H+ V + AA + S +D+LLLEPGE D+APAGLFP + PGLTKDAEI NGR+AM+GLI LVA A T IL V++ G L
Sbjct: 8 FVKAMEDYKADFPSFAERGWGATVKAERWNGRHVMFGWLVFWITAYCKGHGLLPDPSVLLDLSQWGP------VASLGDSTPISQQRAIVLVAHIHVLFVSIAAAIAPFSFQDKLLLEPGEADDAPAGLFPPMAPGLTKDAEIWNGRVAMVGLICLVAQAVGTKTPILDVVNMWFGSLF 180
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|298709641|emb|CBJ31450.1| (CAB/ELIP/HLIP superfamily of protein [Ectocarpus siliculosus]) HSP 1 Score: 158.688 bits (400), Expect = 5.217e-44 Identity = 89/189 (47.09%), Postives = 113/189 (59.79%), Query Frame = 0
Query: 103 ALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLL--EPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
A SVF+ A A+F +P + G GP+ KAERWNGRHAMFGW A++ATGY QAH L+P+ +D K WGT T TI RA I + H+H AV V A + S +D+L L + GEKD GL P+ PGLT +AEI NGR+AM+GL+ A TGQ L V++ GLGGLL+
Sbjct: 46 AAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAY------TTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 228
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|676387071|ref|XP_009036814.1| (hypothetical protein AURANDRAFT_25646 [Aureococcus anophagefferens] >gi|323452963|gb|EGB08836.1| hypothetical protein AURANDRAFT_25646 [Aureococcus anophagefferens]) HSP 1 Score: 150.214 bits (378), Expect = 2.284e-41 Identity = 84/177 (47.46%), Postives = 105/177 (59.32%), Query Frame = 0
Query: 113 AMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPE--GGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
A F +P + G G S KAERWNGRHAMFGW+ ++ATGY QAHGL+P +D KEWGT I++ G TI RA I IA++H V + AA+ +D LLLE GE DE P GL PA GLT AE+ NGR+AMLGL+ + A + L+ +D LGG LL
Sbjct: 2 ATETFAKDFPIFNSYGWGVSAKAERWNGRHAMFGWVFIVATGYCQAHGLIPNPSQALDFKEWGTLAIISG--GKGGGLTITNERACILIANVHFLMVSLCAAWCPLPFQDTLLLEQGEPDEEPTGLIPAFDTGLTPAAEMWNGRLAMLGLVVVSAYSLIYQVPFLTAVDTMLGGTLL 176
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|551540280|ref|XP_005758550.1| (hypothetical protein EMIHUDRAFT_106967 [Emiliania huxleyi CCMP1516] >gi|485606232|gb|EOD06121.1| hypothetical protein EMIHUDRAFT_106967 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 148.288 bits (373), Expect = 1.036e-40 Identity = 89/178 (50.00%), Postives = 110/178 (61.80%), Query Frame = 0
Query: 114 MADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRP--GLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
M+ F YP +A G GP+VKAERWNGRHAMFGW+A+L TG A++HG LP G + EWG G T I RA I IAH+H AV AA+ + D L L GEKDE P GLF L+ GLT AE+ NGR+AM+G+IA+V +A +G+DIL V+D G GG LL
Sbjct: 1 MSQFAADYPWLAKYGFGPTVKAERWNGRHAMFGWLAILGTGVAKSHGWLPSGDVALTYNEWGGLA------QQGFNTYITNERAIIMIAHVHALAVSAAAAFGPQVLGDSLTLLDGEKDEDPYGLFVPLKGTFGLTPAAEMANGRMAMMGIIAVVLTSAISGKDILEVVDIGTGGNLL 172
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1210520614|dbj|GAX20607.1| (hypothetical protein FisN_3Hh542 [Fistulifera solaris]) HSP 1 Score: 147.517 bits (371), Expect = 8.578e-40 Identity = 80/200 (40.00%), Postives = 110/200 (55.00%), Query Frame = 0
Query: 87 TPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLP--EGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGG 284
TP V +++ L +FE A AD+ ++PA A G GPSV+AE+WNGRHAMFGW + AT Y + HGL+P E + K+WGT ++ TI RA I A+ H V + A + S D L EP G P GLT++AEILNGR+AMLGL+ALV A +D+L ++++ +GG
Sbjct: 21 TPSKNVVPKVTSIQGANLGAPEIFEDATADWAKQFPAFAKYGWGPSVQAEKWNGRHAMFGWFFICATAYCKGHGLIPDAESLVSFKDWGTLATISGK------NTITNERAIILAANAHFFGVSLMATFCPPSQGDTLFTEPTVNQPTGYGYMPKFNMGLTQEAEILNGRLAMLGLMALVVATAVEQKDMLDIVNEWVGG 214 The following BLAST results are available for this feature:
BLAST of EWM23709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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