EWM23709.1, cds6967 (CDS) Nannochloropsis gaditana

Overview
NameEWM23709.1
Unique Namecds6967
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:171984..172226 +
Alignment locationCM002470.1:172530..172808 +
Alignment locationCM002470.1:172920..173154 +
Alignment locationCM002470.1:173460..173572 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23709.1
ProductChlorophyll A-B binding protein
Orig transcript idgnl|cribi|Naga_100030g5.4206.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:171984..172226 +
CM002470.1supercontigCM002470.1:172530..172808 +
CM002470.1supercontigCM002470.1:172920..173154 +
CM002470.1supercontigCM002470.1:173460..173572 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom
IPR022796Chloroa_b-bind
Homology
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|585104863|gb|EWM23709.1| (Chlorophyll A-B binding protein [Nannochloropsis gaditana])

HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA 289
            MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA
Sbjct:    1 MHADVESPKCNGSHCASRSLFFERGWTFPLLPTGIHFLSTHFSCLFFSTHPIFLTMKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA 289          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|545703658|ref|XP_005704154.1| (hypothetical protein Gasu_47790 [Galdieria sulphuraria] >gi|452820594|gb|EME27634.1| hypothetical protein Gasu_47790 [Galdieria sulphuraria])

HSP 1 Score: 174.866 bits (442), Expect = 1.870e-50
Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 0
Query:  104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLL 286
            +  + +F +AM DF   YP   + GLG + KAERWNGRHAMFG +A++ TGYA+ HG +P     +D ++WGT V+       G    I   RA + +AH+H+  V + AA +  S +DRLLL PGEKDE PAGL P  + GLTK+AE+ NGR+AMLG+  +VA +  TGQ IL V+++GLG +L
Sbjct:   40 MQQLGIFRQAMKDFASEYPDFVSRGLGVTSKAERWNGRHAMFGLLAIVLTGYAKGHGWIPNADQVLDMQQWGTLVM------EGFNQKITNERAIVLVAHIHVLLVSIAAAIAPFSFQDRLLLRPGEKDEEPAGLLPPFKLGLTKEAELWNGRLAMLGVTFIVATSIITGQSILDVVNKGLGNIL 218          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1189387379|gb|OSX74445.1| (hypothetical protein BU14_0289s0024 [Porphyra umbilicalis])

HSP 1 Score: 172.94 bits (437), Expect = 1.101e-49
Identity = 93/186 (50.00%), Postives = 116/186 (62.37%), Query Frame = 0
Query:  104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            +  + VF +AM +F   YP  A  G G +VKAERWNGRH M GW+ L+ATGYA+ HGL+PE    +D K+WGT        A G    I   RA I IAH+HL  V V AA +    +D+LLL PGE+D+APAGL P + PGL K AE  NGR+AMLGL+ LV  + AT   IL  ++ GLG LL 
Sbjct:   44 MQQLPVFTQAMDEFKKEYPDFAKRGWGATVKAERWNGRHVMAGWVILVATGYAKGHGLIPEASSLLDLKQWGTLA------ALGNQQPISNERAIILIAHVHLLFVSVAAALAPFPFQDKLLLAPGEEDDAPAGLIPPMAPGLNKTAETWNGRVAMLGLLVLVCTSVATKTPILDTLNAGLGNLLF 223          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|922854142|gb|KOO22702.1| (low molecular mass early light-inducible protein hv60 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 171.014 bits (432), Expect = 4.538e-49
Identity = 94/192 (48.96%), Postives = 122/192 (63.54%), Query Frame = 0
Query:   98 AVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            AV+  A   M+VFE  M  F G +P +A  G GP+VKAERWNGRHAMFGW+ ++ATGYA++HGL+P G   +  K+WG    +  +        I   RA I + H+H  AV   AA+    + D L L  GE DE P GLF  L  GLT  AE+LNGR+AMLGLIA+V+ + A+G DIL V++ G+GGLLL
Sbjct:   21 AVKQTAAPQMTVFENGMQQFKGDFPWLAKYGFGPTVKAERWNGRHAMFGWVMIVATGYAKSHGLIPSGDVALQYKDWGGLAQLGLN------QYISTERAVIMMVHVHALAVSAAAAFGPQVLGDTLTLLDGETDEEPYGLFVPLESGLTPAAEMLNGRLAMLGLIAVVSASMASGMDILEVVNIGVGGLLL 206          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1189381685|gb|OSX69387.1| (hypothetical protein BU14_1564s0002 [Porphyra umbilicalis])

HSP 1 Score: 171.4 bits (433), Expect = 5.499e-49
Identity = 91/186 (48.92%), Postives = 118/186 (63.44%), Query Frame = 0
Query:  104 LSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            +  + VF RAM +F   YP  A  G G +VKAERWNGRH M GW+ L+ATGYA+ HGL+P+    ++ KEWGT        A G    I   RA I IAH+HL  V V AA +  + +D+LLL PGE+D+ PAGL P L+ GL K+AE  NGR+AMLGL+ LV  + AT   +L  +++GLG LL 
Sbjct:   44 MQQLPVFTRAMDEFKNEYPDFAKRGWGATVKAERWNGRHVMAGWVILVATGYAKGHGLIPDASSLLNLKEWGTLA------ALGNQQPITNERAIILIAHVHLLFVSVAAALAPFAFQDKLLLAPGEQDDKPAGLIPPLQFGLNKNAETWNGRVAMLGLLVLVGSSVATKTPVLDTLNKGLGNLLF 223          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|32394636|gb|AAM94016.1| (low molecular mass early light-inducible protein HV60 [Griffithsia japonica])

HSP 1 Score: 168.703 bits (426), Expect = 1.615e-48
Identity = 87/179 (48.60%), Postives = 112/179 (62.57%), Query Frame = 0
Query:  110 FERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGG--MDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLL 286
            F +AM D+   +P+ A  G G +VKAERWNGRH MFGW+    T Y + HGLLP+    +D  +WG         + G  T I   RA + +AH+H+  V + AA +  S +D+LLLEPGE D+APAGLFP + PGLTKDAEI NGR+AM+GLI LVA A  T   IL V++   G L 
Sbjct:    8 FVKAMEDYKADFPSFAERGWGATVKAERWNGRHVMFGWLVFWITAYCKGHGLLPDPSVLLDLSQWGP------VASLGDSTPISQQRAIVLVAHIHVLFVSIAAAIAPFSFQDKLLLEPGEADDAPAGLFPPMAPGLTKDAEIWNGRVAMVGLICLVAQAVGTKTPILDVVNMWFGSLF 180          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|298709641|emb|CBJ31450.1| (CAB/ELIP/HLIP superfamily of protein [Ectocarpus siliculosus])

HSP 1 Score: 158.688 bits (400), Expect = 5.217e-44
Identity = 89/189 (47.09%), Postives = 113/189 (59.79%), Query Frame = 0
Query:  103 ALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLL--EPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            A    SVF+ A A+F   +P  +  G GP+ KAERWNGRHAMFGW A++ATGY QAH L+P+    +D K WGT         T    TI   RA I + H+H  AV V A  +  S +D+L L  + GEKD    GL P+  PGLT +AEI NGR+AM+GL+     A  TGQ  L V++ GLGGLL+
Sbjct:   46 AAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAY------TTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 228          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|676387071|ref|XP_009036814.1| (hypothetical protein AURANDRAFT_25646 [Aureococcus anophagefferens] >gi|323452963|gb|EGB08836.1| hypothetical protein AURANDRAFT_25646 [Aureococcus anophagefferens])

HSP 1 Score: 150.214 bits (378), Expect = 2.284e-41
Identity = 84/177 (47.46%), Postives = 105/177 (59.32%), Query Frame = 0
Query:  113 AMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPE--GGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            A   F   +P   + G G S KAERWNGRHAMFGW+ ++ATGY QAHGL+P     +D KEWGT  I++     G   TI   RA I IA++H   V + AA+     +D LLLE GE DE P GL PA   GLT  AE+ NGR+AMLGL+ + A +       L+ +D  LGG LL
Sbjct:    2 ATETFAKDFPIFNSYGWGVSAKAERWNGRHAMFGWVFIVATGYCQAHGLIPNPSQALDFKEWGTLAIISG--GKGGGLTITNERACILIANVHFLMVSLCAAWCPLPFQDTLLLEQGEPDEEPTGLIPAFDTGLTPAAEMWNGRLAMLGLVVVSAYSLIYQVPFLTAVDTMLGGTLL 176          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|551540280|ref|XP_005758550.1| (hypothetical protein EMIHUDRAFT_106967 [Emiliania huxleyi CCMP1516] >gi|485606232|gb|EOD06121.1| hypothetical protein EMIHUDRAFT_106967 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 148.288 bits (373), Expect = 1.036e-40
Identity = 89/178 (50.00%), Postives = 110/178 (61.80%), Query Frame = 0
Query:  114 MADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEG--GMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRP--GLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLL 287
            M+ F   YP +A  G GP+VKAERWNGRHAMFGW+A+L TG A++HG LP G   +   EWG           G  T I   RA I IAH+H  AV   AA+    + D L L  GEKDE P GLF  L+   GLT  AE+ NGR+AM+G+IA+V  +A +G+DIL V+D G GG LL
Sbjct:    1 MSQFAADYPWLAKYGFGPTVKAERWNGRHAMFGWLAILGTGVAKSHGWLPSGDVALTYNEWGGLA------QQGFNTYITNERAIIMIAHVHALAVSAAAAFGPQVLGDSLTLLDGEKDEDPYGLFVPLKGTFGLTPAAEMANGRMAMMGIIAVVLTSAISGKDILEVVDIGTGGNLL 172          
BLAST of EWM23709.1 vs. NCBI_GenBank
Match: gi|1210520614|dbj|GAX20607.1| (hypothetical protein FisN_3Hh542 [Fistulifera solaris])

HSP 1 Score: 147.517 bits (371), Expect = 8.578e-40
Identity = 80/200 (40.00%), Postives = 110/200 (55.00%), Query Frame = 0
Query:   87 TPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLP--EGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGG 284
            TP   V     +++   L    +FE A AD+  ++PA A  G GPSV+AE+WNGRHAMFGW  + AT Y + HGL+P  E  +  K+WGT   ++         TI   RA I  A+ H   V + A +   S  D L  EP        G  P    GLT++AEILNGR+AMLGL+ALV   A   +D+L ++++ +GG
Sbjct:   21 TPSKNVVPKVTSIQGANLGAPEIFEDATADWAKQFPAFAKYGWGPSVQAEKWNGRHAMFGWFFICATAYCKGHGLIPDAESLVSFKDWGTLATISGK------NTITNERAIILAANAHFFGVSLMATFCPPSQGDTLFTEPTVNQPTGYGYMPKFNMGLTQEAEILNGRLAMLGLMALVVATAVEQKDMLDIVNEWVGG 214          
The following BLAST results are available for this feature:
BLAST of EWM23709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104863|gb|EWM23709.1|0.000e+0100.00Chlorophyll A-B binding protein [Nannochloropsis g... [more]
gi|545703658|ref|XP_005704154.1|1.870e-5047.57hypothetical protein Gasu_47790 [Galdieria sulphur... [more]
gi|1189387379|gb|OSX74445.1|1.101e-4950.00hypothetical protein BU14_0289s0024 [Porphyra umbi... [more]
gi|922854142|gb|KOO22702.1|4.538e-4948.96low molecular mass early light-inducible protein h... [more]
gi|1189381685|gb|OSX69387.1|5.499e-4948.92hypothetical protein BU14_1564s0002 [Porphyra umbi... [more]
gi|32394636|gb|AAM94016.1|1.615e-4848.60low molecular mass early light-inducible protein H... [more]
gi|298709641|emb|CBJ31450.1|5.217e-4447.09CAB/ELIP/HLIP superfamily of protein [Ectocarpus s... [more]
gi|676387071|ref|XP_009036814.1|2.284e-4147.46hypothetical protein AURANDRAFT_25646 [Aureococcus... [more]
gi|551540280|ref|XP_005758550.1|1.036e-4050.00hypothetical protein EMIHUDRAFT_106967 [Emiliania ... [more]
gi|1210520614|dbj|GAX20607.1|8.578e-4040.00hypothetical protein FisN_3Hh542 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6983rna6983Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications