|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100030g3.4175.mrna |
| Orig protein id | gnl|cribi|Naga_100030g3.4175 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:168757..170065 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6981 ID=rna6981|Name=rna6981|organism=Nannochloropsis gaditana|type=mRNA|length=1688bp
CCTTCCTACTCCACAAGGACACGAAAATGCTCACCCGGCGAGACTTTTTT
CCTGTATACACACCACTAGACTGAGCACATCCGAATTGAGGGCGTCGTGG
CGACAGCGGCGTTACCATCATGGCCGCAAGCGCCTCCTCCCCTCTCCCCT
CCCCGTCTTCACCTCCCCCCTCTGCCTCGCCCCCCGCAGTCATTCAGGAA
GGCGCCTGGGTCATCTTACAGATGGGCGACGGCCGCAATTTTTTTGCCTG
CGCACAACAGAAAGGAATGATGCGTCTGGGCCGTGTTACCATCTCGCTCA
GCGGCTTGATCGGTGTGCCGTACGGAAGCGTCCTGGAGGTCCATCCTGAT
CGCCTCGTGCCCCTGCCCGGCACCACAGAGCTCTATGAGGACCTGTCCGT
CGGTGACATGGACGGGAACGATTTTGCACGCGGTGGGGCCCCGCTCGGGG
AATACGATGGAGTCAGCCTGGATAACCGGGATTTCGCCGACACGAACACA
GCCCAGCGTCTGAGCATGGAGGAGGTGGAGGAGCTGAAGCGGAGCGGGGC
CTCGGGACAGGCAATTATTCAGGCGCTCGCCTCCAATTCCGACACCTGGG
AGAAGAAAACGGCCTTTGCCAAGCAGAAGTGGACGCAGAAAAAGGCACAC
AAATACGTGGTTCGCGTCCGGGCATTGGCTGGGTGTGGGAGCAACGTCGC
GGAAGCCCTCTTCGTCAAGTCCGGGCTGGTGAAAACGACGGCCATCCGCC
CCGACAGCATTGCCCAACTCCTTTCTTTCGGCAATGTGGCAGCGGGTGCC
CGTGTCCTGGTTTTGGACTCGTACTCGGGAGTGGTGTTGGGCTGCATCCT
GGAGCGCCTGGGGGGTGAGGGGAAAGCCATAAGTCTCTACGCGGGCGCGC
AGGCGCACATTGACCATCTAAAATATTTCAACCTTCCTACGGACCAGCTC
GCTCAGACGCTCGTGCATTTTCCGGCATCTGCGCTGGCGGAGTTGGAGGT
AGGGAGGGCTCGGCGGAGGGCGGAAGGGGGGGAGGGCGGGGAGGAGGAGG
ATGCCAGGTTCTTGGCCACGGCCGAGGAAGAAGCGAGGGCTAGGGCATCG
GGGAAATTTGTATTGCACACGACAAGGGAGGGCGAGGGGCAGGGGGAGGA
GAAAGCGGCCGGGCAGGAAGATTTCGACCGAGCCAAGTGGTTGAAGTACC
TGGAGAAAAAGCGGCGTCGACTCTGCGTCTTGGCGGAAGGGCGGAGATTG
CTGATAGAGGGCGCCGACTGCTTGGTTGTGGCCAGCCGGCACGATCCTTC
CGTTGTGGTCCCTCGCTTGCTCGCTTTCCTGGAGGACGGCGCGGCCTTCG
CGGTCTACCATGAGTATCTCGAGCCTTTGGTGGCCTTATACGCCTCCTTG
ATGGAGGCCGGCATGCTACGACTGCAGATGCTGAGCACCTGGTGGCGCGA
ATACCAGATCTTGCCAGGCAGGTCGCACCCCCACATGAGTATGAGCAGTG
ACGGTGGGTACCTCTTGACTGGTATTAAGGTCAGTCAAGGCGAGGCAGGG
CAAAGGGAGGGAGGAGGGGAGGAGGAGAGGCAGGGACAGGAGGGGGAGAA
AAGTTCGGGGAAGGAAGGCGGCGGCAATAGGAAGAGGCACAGAAATCAAA
GATAGCTGACAAAGAAAACAGAAACGTTGTATCAAGTA back to topprotein sequence of rna6981 >rna6981-protein ID=rna6981-protein|Name=rna6981|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MPPATNQVSSPRRSREPLWSFIAAHAILCINPARAFLTPTSAIGSLPCST
SSPSPFVSQARPFPAGKLWSQCPPTSRTSPTNNAIEIRQPLLLPAAAHSR
DSFLRFLPRPPPSLSPPPSPASHHIRRMSLSDLSAVVLLAAREFTPLNEL
AEYGGTPSGGLVEEFEAWGLRQKVRWGMLARYLYPDDHEVLLLVEGEEGV
YRGKRGKEAREGGGEGGAAGLLGMVELSLQPTTGLPPPPLPPLPSRQGPL
RPAGLASAALHLQFARGRDSPAPGPRGAFAGRGRSRGPGPGPLLGLPARR
QRLPPGRASLRTSGLPRRGQGEGVGG back to topmRNA from alignment at CM002470.1:168757..170065+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6981 ID=rna6981|Name=rna6981|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp|location=Sequence derived from alignment at CM002470.1:168757..170065+ (Nannochloropsis gaditana)
TTTATGGGGCCCGAAAGTCACGATTAGTGCATGCATGTGTTGTTGGCTGG
ACAAGCGATGTACTAGCACGCCGTAGTATCGTTTTCCTAGAATAAcatgt
cctctttttctgtGCTCAAAATCACAACTCCGACAGGAGATGCCACCTGC
CACAAATCAAGTAAGTTCACCACGGAGGTCAAGAGAGCCTCTATGGAGCT
TTATTGCTGCACACGCCATCTTGTGCATAAATCCAGCCAGGGCATTCCTG
ACGCCAACCTCTGCCATCggctctcttccttgttcaACCtcatcgccctc
tcccttcgtctCGCAAGCACGACCCTTTCCCGCCGGCAAACTCTGGTCAC
AGTGCCCGCCCACTTCACGCACATCTCCCACAAATAATGCCATCGAAATT
CGtcagcccctccttcttcctgcggCGGCACACTCACGCGACAgtttcct
ccgctttctgccgcgacccccgccctccctctccccacctccctctcctg
cctcccaccaCATCCGCCGCATGTCCTTAAGCGACCTCTCGGCCGTCGTG
CTCCTAGCTGCACGTGAATTCACCCCTTTAAATGAATTAGCGGAATACGG
AGGCACCCCGTCCGGGGGCCTCGTGGAGGAGTTCGAAGCCTGGGGGCTGC
GGCAGAAAGTCCGATGGGGCATGCTGGCTAGATATTTATACCCGGACGAC
CACGAGGTGCTCttgctggtggagggcgaggagggggtatacagaggaaa
gcgagggaaggaggcaagggagggcggaggggagggaggcgcggcgggTC
TTCTTGGGATGGTCGAGCTCTCCCTGCAGCCCACGACggggctgcccccc
ccccctcttccccctctccccagcCGTCAAGGGCCTCTTCGCCCTGCTGG
GTTGGCCTCTGCAGCCCTACATCTCCAATTTGCTCGTGGACGTGACAGTC
CGGCGCCAGGGCCACGCGGCGCGTTtgctggccgtggccgaAGCCGAGGC
CCGGGCCCGGGGCCACTCTTGGGTCTACCTGCACGCCGACAGCGACTACC
TCCCGGCCGTGCGTCTCTACGAACGTCTGGGCTACCGAGACgtgggcagg
gggagggcgtgggtggaTAGGTGGACGGGTCTTCGCTTGCGGTACATGCG
GAAAGAACtgtgagcggggagggagggaggggggcctcCCCCGTTGACCC
AACTGTGCATAACGGGCGTCATCGTAAAGAACGAAGCAATCCATTCGGAC
AAAGATCGTGAGGGACAGGATGGAATTGTAGCGTGGAGTCTTTGGTATCT
agcacttcc back to topCoding sequence (CDS) from alignment at CM002470.1:168757..170065+ >rna6981 ID=rna6981|Name=rna6981|organism=Nannochloropsis gaditana|type=CDS|length=981bp|location=Sequence derived from alignment at CM002470.1:168757..170065+ (Nannochloropsis gaditana)
ATGCCACCTGCCACAAATCAAGTAAGTTCACCACGGAGGTCAAGAGAGCC
TCTATGGAGCTTTATTGCTGCACACGCCATCTTGTGCATAAATCCAGCCA
GGGCATTCCTGACGCCAACCTCTGCCATCggctctcttccttgttcaACC
tcatcgccctctcccttcgtctCGCAAGCACGACCCTTTCCCGCCGGCAA
ACTCTGGTCACAGTGCCCGCCCACTTCACGCACATCTCCCACAAATAATG
CCATCGAAATTCGtcagcccctccttcttcctgcggCGGCACACTCACGC
GACAgtttcctccgctttctgccgcgacccccgccctccctctccccacc
tccctctcctgcctcccaccaCATCCGCCGCATGTCCTTAAGCGACCTCT
CGGCCGTCGTGCTCCTAGCTGCACGTGAATTCACCCCTTTAAATGAATTA
GCGGAATACGGAGGCACCCCGTCCGGGGGCCTCGTGGAGGAGTTCGAAGC
CTGGGGGCTGCGGCAGAAAGTCCGATGGGGCATGCTGGCTAGATATTTAT
ACCCGGACGACCACGAGGTGCTCttgctggtggagggcgaggagggggta
tacagaggaaagcgagggaaggaggcaagggagggcggaggggagggagg
cgcggcgggTCTTCTTGGGATGGTCGAGCTCTCCCTGCAGCCCACGACgg
ggctgccccccccccctcttccccctctccccagcCGTCAAGGGCCTCTT
CGCCCTGCTGGGTTGGCCTCTGCAGCCCTACATCTCCAATTTGCTCGTGG
ACGTGACAGTCCGGCGCCAGGGCCACGCGGCGCGTTtgctggccgtggcc
gaAGCCGAGGCCCGGGCCCGGGGCCACTCTTGGGTCTACCTGCACGCCGA
CAGCGACTACCTCCCGGCCGTGCGTCTCTACGAACGTCTGGGCTACCGAG
ACgtgggcagggggagggcgtgggtggaTAG back to top
|