rna698, rna698 (mRNA) Nannochloropsis gaditana

Overview
Namerna698
Unique Namerna698
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length826
Alignment locationCM002456.1:192883..193950 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100383g2.7084.mrna
Orig protein idgnl|cribi|Naga_100383g2.7084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:192883..193950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100383g2gene669Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna698rna698-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29974.1cds698Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna698 ID=rna698|Name=rna698|organism=Nannochloropsis gaditana|type=mRNA|length=826bp
AGAGGAAGTGAAGAGCATGCACGATTAGAAAAGCAATGGGTGTGGTTATG
GCACGGATTTATTCATCGTTTGCGCCTCTGAATGACTTGCTCTATCATGT
CCCTCCCTCCCTTATTCGCCCTCTCCCCCCTCCTTTCTCACCTCCCTCCC
TACCGTCCCCTCCGCGTACGCTCGGCTGTCGACTTAGCAATTCGGCAATT
TCCAGTGCCAGCAACTGATGCAACAAGCCAAGAAAGAGCGGTGCAACTTC
GGTCGCTTCTATTTCCGCTTCCCCAACGGAGAGTCCGGGCTGGACGTGTA
CACAAGGGTCACCTCCTTCATCTCCACCATGTTCAGGGATTTTGCCGACG
GGCACATTTGCCGGCCGGATCTGAACATCGTCATCGTCACGCACGGATTG
ACCTTGCGCCTGCTGCTCATGCGCTGGTTCAAGCTGACGGTAGAGACCTT
CGAAAGCACGACGAACCCGCCCAACGGCTCTTTTGTCGTGATGACGCGAA
AGGAGGGGCCGAGGGGAGGACGCTCCGGGGGGGGAGTCTACGAAATGGCG
CCCGAATCGGCTGCCTTGATCTCGTTAAGCTGTGACTCCGTGCCCGTGGG
CGCCTCCATCATGACCCCGTGCAGCAATTTCGAGGACAACACCGGCAGAG
AGCAAAAGAATGGGGGAGAGGAAAGGGTAATGACACCTCTGTCGAATGCC
GTTGAGCGACTCTCAATTGACGCCAATGGGATTTCCGAGGCTGAAGCCAG
ACCTAGTTAATAATAAGGCGTTGATGACAAAATCTGCAAATGAAAAGTAC
ACATTCGATCACATATTCGATCATGG
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protein sequence of rna698

>rna698-protein ID=rna698-protein|Name=rna698|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MRWWHRLLTYLSSRRRDTTSHCSYMTQEQSPLSPSISIPAFVLQERGILS
PAKPPPLESQSMNFDERKSNYEECDKETSETREEISDGTLSSVEGEQAQN
STGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILL
GLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPN
SFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTD
FVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFE
IDCSVATLWGEPTKADGSKDTVSDCFGAFV
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mRNA from alignment at CM002456.1:192883..193950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna698 ID=rna698|Name=rna698|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at CM002456.1:192883..193950+ (Nannochloropsis gaditana)
TGCAGTCAACGTACCCGTTAAAGCGATCTCATTGGAATGCGCTGGTGGCA
CCGTTTACTCACTTACTTGAGCAGCAGGCGACGAGACACTACTTCACACT
GTAGTTATATGACACAGGAGCAGTCACCCCTTTCaccctccatttccatt
cCGGCTTTTGTGCTTCAAGAGCGAGGCATTTTATCGCCGGccaagccccc
tcctttggaAAGCCAATCTATGAATTTTGATGAAAGAAAATCTAATTACG
AAGAATGTGACAAAGAAACTTCAGAAACTAGAGAGGAGATTTCAGATGGA
ACTTTATCGtcggtggaaggagagcaggcaCAGAACAGCACTGGTGTTCC
GTTAcgcgctccttccttttccacaACTCAAAGCGTCCATTCAGTCATGT
CAGACATCCGAAGCCGCCTACACCACCTTCCCAGATGGAAATACAGATTT
CTATGCGCAAGCTTGTTGTTAGCTGTCATCCTTTTGGGTCTACTTCTCTG
CGTTTCGATTGTGTACGGCTTCGGCTTGAAATACGTCCATTTGTCCGTCA
CCGGAACGACGCCGCTGGCTCCAAACTTAGTAGATGCGGAAGGAAATGCG
CCAATGCGAGCAACCATTAGTCTTGACAATCCCAATTCTTTCCCTATCAC
CGCCTCAGCAAGTGAAGTAGTTCTATCATACATGAATAGAACCGACGGTG
GTCAACAGTACACTCCCCTGGCATccgcccctctgccccgcATTCAACTG
CATGCCCGTCACAAAGATTGCATGCTTACCACTGATTTTGTGTTGGCCCA
TTTGCCCACAAAGCCTGAGGGAAAAGCAATCATGGGGGCGGTCCTCCAGG
GTCGGGCCACATTCCTTAATGCGGCCGCCACCCTGCGGCTCCACGTGCGC
GCCTTGGGCTTCATACGGATTGTCCGCAGGTTCGAAATAGACTGTTCTGT
CGCAACGTTGTGGGGGGAGCCAACTAAGGCAGATGGTAGCAAAGACACGG
TCTCGGATTGCTTTGGGGCTTTTGTGTAGAGCCACATTGACGAAACATTA
GAGCTCCCCAGACGGCTC
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Coding sequence (CDS) from alignment at CM002456.1:192883..193950+

>rna698 ID=rna698|Name=rna698|organism=Nannochloropsis gaditana|type=CDS|length=993bp|location=Sequence derived from alignment at CM002456.1:192883..193950+ (Nannochloropsis gaditana)
ATGCGCTGGTGGCACCGTTTACTCACTTACTTGAGCAGCAGGCGACGAGA
CACTACTTCACACTGTAGTTATATGACACAGGAGCAGTCACCCCTTTCac
cctccatttccattcCGGCTTTTGTGCTTCAAGAGCGAGGCATTTTATCG
CCGGccaagccccctcctttggaAAGCCAATCTATGAATTTTGATGAAAG
AAAATCTAATTACGAAGAATGTGACAAAGAAACTTCAGAAACTAGAGAGG
AGATTTCAGATGGAACTTTATCGtcggtggaaggagagcaggcaCAGAAC
AGCACTGGTGTTCCGTTAcgcgctccttccttttccacaACTCAAAGCGT
CCATTCAGTCATGTCAGACATCCGAAGCCGCCTACACCACCTTCCCAGAT
GGAAATACAGATTTCTATGCGCAAGCTTGTTGTTAGCTGTCATCCTTTTG
GGTCTACTTCTCTGCGTTTCGATTGTGTACGGCTTCGGCTTGAAATACGT
CCATTTGTCCGTCACCGGAACGACGCCGCTGGCTCCAAACTTAGTAGATG
CGGAAGGAAATGCGCCAATGCGAGCAACCATTAGTCTTGACAATCCCAAT
TCTTTCCCTATCACCGCCTCAGCAAGTGAAGTAGTTCTATCATACATGAA
TAGAACCGACGGTGGTCAACAGTACACTCCCCTGGCATccgcccctctgc
cccgcATTCAACTGCATGCCCGTCACAAAGATTGCATGCTTACCACTGAT
TTTGTGTTGGCCCATTTGCCCACAAAGCCTGAGGGAAAAGCAATCATGGG
GGCGGTCCTCCAGGGTCGGGCCACATTCCTTAATGCGGCCGCCACCCTGC
GGCTCCACGTGCGCGCCTTGGGCTTCATACGGATTGTCCGCAGGTTCGAA
ATAGACTGTTCTGTCGCAACGTTGTGGGGGGAGCCAACTAAGGCAGATGG
TAGCAAAGACACGGTCTCGGATTGCTTTGGGGCTTTTGTGTAG
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Synonyms
Publications