EWM29974.1, cds698 (CDS) Nannochloropsis gaditana

Overview
NameEWM29974.1
Unique Namecds698
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:192919..193911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29974.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100383g2.7084.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:192919..193911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MRWWHRLLTYLSSRRRDTTSHCSYMTQEQSPLSPSISIPAFVLQERGILSPAKPPPLESQSMNFDERKSNYEECDKETSETREEISDGTLSSVEGEQAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAFV 330
            MRWWHRLLTYLSSRRRDTTSHCSYMTQEQSPLSPSISIPAFVLQERGILSPAKPPPLESQSMNFDERKSNYEECDKETSETREEISDGTLSSVEGEQAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAFV
Sbjct:    1 MRWWHRLLTYLSSRRRDTTSHCSYMTQEQSPLSPSISIPAFVLQERGILSPAKPPPLESQSMNFDERKSNYEECDKETSETREEISDGTLSSVEGEQAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAFV 330          
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 102.449 bits (254), Expect = 5.239e-21
Identity = 69/212 (32.55%), Postives = 113/212 (53.30%), Query Frame = 0
Query:  120 VMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEV-VLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDT-VSDCFGAF 329
            ++  I + L+ +P+WKYR + +S+++ +I   LLL VS+VYGFG+   H+ V     + P  +  +G+ P+R+ + ++NPN F I    +++ V S+  R+ G    + L  + +P   LHAR       + FV+  L +   G  +  AVL G  TF    A   L V +LGF+ I R + ++C+V   WG        KD  +SDC+G F
Sbjct:  180 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLP--LPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPG----SLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWG--------KDILLSDCYGRF 377          
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.138 bits (248), Expect = 1.204e-20
Identity = 67/204 (32.84%), Postives = 109/204 (53.43%), Query Frame = 0
Query:  128 LHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTT-PLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPR-IQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAF 329
            LHH+P+W+YR L  ++++  + L L+L VS++YGF +   H+ VT     L P  VD+ G+ P+ +TI   NPNSF  T+S S + +  +      +    L +   PR I+L    +      +F L  + +   G A + AVL+G+   L   +T ++ V+ LG I   R F+++C+V   WGE      +  T+SDC+G F
Sbjct:  112 LHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGE------NPLTLSDCYGRF 305          
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.559 bits (179), Expect = 5.743e-11
Identity = 73/271 (26.94%), Postives = 115/271 (42.44%), Query Frame = 0
Query:  120 VMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVV----LSYMNR---------------------TDGGQQYTP-------LASAPLPRIQLHARHKDCMLTTDFVLAHLPT-----------KPEGKAI-----------------MGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDT-VSDCFGAF 329
            ++  I + L+ +P+WKYR + +S+++ +I   LLL VS+VYGFG+   H+ V     + P  +  +G+ P+R+ + ++NPN F I  S +  +    LS + R                     TD      P       L  + +P   LHAR       + FV+  L +             EG+ +                   AVL G  TF    A   L V +LGF+ I R + ++C+V   WG        KD  +SDC+G F
Sbjct:  149 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLP--LPPDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEKSFGLSFRIDGEGRRVDVRFSYLSHPSQGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWG--------KDILLSDCYGRF 409          
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 64.6994 bits (156), Expect = 1.336e-8
Identity = 43/138 (31.16%), Postives = 77/138 (55.80%), Query Frame = 0
Query:  120 VMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEV-VLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHL 256
            ++  I + L+ +P+WKYR + +S+++ +I   LLL VS+VYGFG+   H+ V     + P  +  +G+ P+R+ + ++NPN F I    +++ V S+  R+ G    + L  + +P   LHAR       + FV+  L
Sbjct:   56 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLP--LPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPG----SLLGVSTIPEHLLHAREGAHTTESVFVVRDL 187          
BLAST of EWM29974.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 62.003 bits (149), Expect = 3.342e-7
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = 0
Query:  128 LHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTT-PLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPR-IQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQ 271
            LHH+P+W+YR L  ++++  + L L+L VS++YGF +   H+ VT     L P  VD+ G+ P+ +TI   NPNSF  T+S S + +  +      +    L +   PR I+L    +      +F L  + +   G A + AVL+
Sbjct:  112 LHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALP----SRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 253          
The following BLAST results are available for this feature:
BLAST of EWM29974.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112577|gb|EWM29974.1|0.000e+0100.00hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
gi|585109033|gb|EWM26903.1|5.239e-2132.55hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181298|ref|XP_005853540.1|1.204e-2032.84hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
gi|553181303|ref|XP_005853541.1|5.743e-1126.94hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
gi|585109034|gb|EWM26904.1|1.336e-831.16hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|585109030|gb|EWM26900.1|3.342e-732.19hypothetical protein Naga_100103g12 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna698rna698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications