rna6977, rna6977 (mRNA) Nannochloropsis gaditana

Overview
Namerna6977
Unique Namerna6977
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length351
Alignment locationCM002470.1:161790..163614 +

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Properties
Property NameValue
Productputative transporter
Orig transcript idgnl|cribi|Naga_101220g2.5685.mrna
Orig protein idgnl|cribi|Naga_101220g2.5685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:161790..163614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101220g2gene6743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6977rna6977-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23712.1cds6961Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6977 ID=rna6977|Name=rna6977|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGTATACTCATTCACTCTTTTGGGCGATTGGGGCATGCGTCACAACTCG
TGTCTTGCTCTCTAGCAGCAGCAAACAAGTCGTGGACCTGACGTCCTCAA
ATAAGCCTTCCAAAGAACACAATGACATATCGCGTCGTGGAGATTTCAAG
GTGTTCCAACGTTCTTTTTTAACGGTAGCCCTCCTGGCCATGTTTTCGGA
CTGGATCCAGGGGCCCTATAGCTACGCTCTTTATGCCCATTATGGCGGGC
TCTTTTGTCGGCGCCCTGGCCGACAACTACGGAAGGAAGAAGATGTGCGT
CGTCTACGCCGCGTTTTATATCATCTCCTGTCTGGTCAAGCTCGTGAATA
G
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protein sequence of rna6977

>rna6977-protein ID=rna6977-protein|Name=rna6977|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MAGLVANFFAERYGYIGPFVFCLFPLTLVGILATLWWPENYGDANVRPAM
ALPKAWSYIQNNSAIIYLGLGQSCFEGAMYAFVFVWTPALQAGGEDVGPY
LGIIFSTFMVCTMTGSNIFSILIKKNLLTVVPVMVHLIATLANLTAFYFV
KQTSSVYVAFLLFELTVGMFYPSYGSIKSMNIPEEVRSGVMNIFRIPLNA
IMVILLGLIEVKQISMGTTLALCTLIHGVGLIMYWNFERLRKRTPDVHYV
SVKGQEVLDDAM
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mRNA from alignment at CM002470.1:161790..163614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6977 ID=rna6977|Name=rna6977|organism=Nannochloropsis gaditana|type=mRNA|length=1825bp|location=Sequence derived from alignment at CM002470.1:161790..163614+ (Nannochloropsis gaditana)
CCAGGGGATTCAACCCGGAATGGCTCTCCGAGACGTTCGGGTACCTGACG
CTGGGAAACGGGTTCGTCGCGGTGATGGCCGGCCTGGTCGCTAATTTCTT
CGCGGAGCGATACGGATATATCGGTAGGTCCTCCCGTCTGCTTGCGACGC
CTCTAGACGTAGCGCTCTTGCGcgtgtctttttcttttgttttTGGCAGA
ATGTCTCGAGGGGCGGGCACTGACTAGTACGTTTAATGGCGTCGGTCAAC
GCGTGCATCGTGTATGCCGTGATGACCTgattcccgcccttcctcgcgcc
ttcccttctccctccctgctctcaGGCCCGTTCGTTTTCTGCCTGTTCCC
TCTCACCCTGGTCGGCATCCTCGCCACGTTATGGTGGCCTGAGAACTACG
GCGACGCCAACGTGCGGCCCGCGATGGCCCTCCCAAAGGCCTGGAGCTAC
ATTCAGAACAACTCCGCCATCATATACTTGGGCCTGGGGCAGTCCTGCTT
TGAGGGTGCCATGTatgccttcgtcttcgtGTGGACCCCGGCActgcagg
cggggggggaggacgtgggcccCTACCTGGGCATCATTTTCAGCACCTTC
ATGGTCTGCACGATGACGGGCTCGAAcatcttctccatcctcatcaagAA
GAACCTCCTGACCGTGGTTCCCGTGATGGTGCACCTGATCGCCACCCTGG
CCAACCTGACTGCCTTCTACTTCGTCAAACAGACGTCCTCCGTCTAtgtg
gccttcctcctctttgagcTGACCGTAGGCATGTTCTACCCATCCTACGG
AAGCATCAAGTCCATGAACATCCCTGAGGAAGTGCGCTCAGGTAggtttc
gcgccaaaatgtCTCTTTCTTTCGGTGAAAGGCGGCAGTAGGCCTTCGCA
TGCTCGGTCCACAGGTGCAGGCGAGAATGTGTGTGCATTCCTTTATGCTC
CGCTTCTCTCTGTCCCACCGTGACCGAGCAATCAACAAGAGCACTGACAC
TCAACGCTCgctctcactccctcctccaccctccatctccttcgcccctt
tAGGCGTGATGAACATCTTCCGCATCCCCCTGAACGCGATCATGGTCATC
CTCTTGGGCCTGATCGAGGTCAAGCAGATCAGCATGGGCACCACCCTGGC
CCTCTGCACCCTTATCCATGGCGTCGGCCTCATCATGTATTGGAATTTCG
AGCGGTTGAGGAAGCGGACGCCCGACGTGCACTACGTGAGCGTGAAGGGT
CAGGAGGTCTTGGACGATGCCATGTGAcgccaagaggaagggggtctcgt
gggggtgggaagaagcAGTGGGCGGAAGGGCCGGACTGGGCTAGTAGGAC
AGAGACGCTAGCAGGCAGGAGCGGGGGGCTTGGACGTGACGTaggaacgg
gggagggaaaggggccacGAGGGTAGACTGTGAGCACGAGAACTTGAGTT
TTTGTTTAGAGCGAGtgtgaaaaagaaaatactTCGGAGTCAAAAAAAGT
TTTATGACGCACGACGCTGAGAGAAGCGCCGGGATCGAAACGTACTACGG
TTTTCGATGGATTTTGAAGGTTTTTACCCAGAAAGCAACCGGGAGAAACA
TGATGGTACGCAGGAAGGACCGCCCACCGTGGGGCTACGGTGGAAGCATG
ATGTCGAATGGGAGacacacacacatacacacacacatatatatgtatct
ctctctatatatatatagagaGAGGGATAGATCGCTGTCCTCGACAACGA
CGGTGTGCCTCAGAAAATGAAAGCAATCGCAGAGGAAGCTACAACAACCA
ATCAGACTCCAAAAAAATATATCCT
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Coding sequence (CDS) from alignment at CM002470.1:161790..163614+

>rna6977 ID=rna6977|Name=rna6977|organism=Nannochloropsis gaditana|type=CDS|length=2367bp|location=Sequence derived from alignment at CM002470.1:161790..163614+ (Nannochloropsis gaditana)
ATGGCCGGCCTGGTCGCTAATTTCTTCGCGGAGCGATACGGATATATCGG
CCCGTTCGTTTTCTGCCTGTTCCCTCTCACCCTGGTCGGCATCCTCGCCA
CGTTATGGTGGCCTGAGAACTACGGCGACGCCAACGTGCGGCCCGCGATG
GCCCTCCCAAAGGCCTGGAGCTACATTCAGAACAACTCCGCCATCATATA
CTTGGGCCTGGGGCAGTCCTGCTTTGAGGGTGCCATGTatgccttcgtct
tcgtGTGGACCCCGGCActgcaggcggggggggaggacgtgggcccCTAC
CTGGGCATCATTTTCAGCACCTTCATGGTCTGCACGATGACGGGCTCGAA
catcttctccatcctcatcaagAAGAACCTCCTGACCGTGGTTCCCGTGA
TGGTGCACCTGATCGCCACCCTGGCCAACCTGACTGCCTTCTACTTCGTC
AAACAGACGTCCTCCGTCTAtgtggccttcctcctctttgagcTGACCGT
AGGCATGTTCTACCCATCCTACGGAAGCATCAAGTCCATGAACATCCCTG
AGGAAGTGCGCTCAGGCGTGATGAACATCTTCCGCATCCCCCTGAACGCG
ATCATGGTCATCCTCTTGGGCCTGATCGAGGTCAAGCAGATCAGCATGGG
CACCACCCTGGCCCTCTGCACCCTTATCCATGGCGTCGGCCTCATCATGT
ATTGGAATTTCGAGCGGTTGAGGAAGCGGACGCCCGACGTGCACTACGTG
AGCGTGAAGGGTCAGGAGGTCTTGGACGATGCCATGTGAATGGCCGGCCT
GGTCGCTAATTTCTTCGCGGAGCGATACGGATATATCGGCCCGTTCGTTT
TCTGCCTGTTCCCTCTCACCCTGGTCGGCATCCTCGCCACGTTATGGTGG
CCTGAGAACTACGGCGACGCCAACGTGCGGCCCGCGATGGCCCTCCCAAA
GGCCTGGAGCTACATTCAGAACAACTCCGCCATCATATACTTGGGCCTGG
GGCAGTCCTGCTTTGAGGGTGCCATGTatgccttcgtcttcgtGTGGACC
CCGGCActgcaggcggggggggaggacgtgggcccCTACCTGGGCATCAT
TTTCAGCACCTTCATGGTCTGCACGATGACGGGCTCGAAcatcttctcca
tcctcatcaagAAGAACCTCCTGACCGTGGTTCCCGTGATGGTGCACCTG
ATCGCCACCCTGGCCAACCTGACTGCCTTCTACTTCGTCAAACAGACGTC
CTCCGTCTAtgtggccttcctcctctttgagcTGACCGTAGGCATGTTCT
ACCCATCCTACGGAAGCATCAAGTCCATGAACATCCCTGAGGAAGTGCGC
TCAGGCGTGATGAACATCTTCCGCATCCCCCTGAACGCGATCATGGTCAT
CCTCTTGGGCCTGATCGAGGTCAAGCAGATCAGCATGGGCACCACCCTGG
CCCTCTGCACCCTTATCCATGGCGTCGGCCTCATCATGTATTGGAATTTC
GAGCGGTTGAGGAAGCGGACGCCCGACGTGCACTACGTGAGCGTGAAGGG
TCAGGAGGTCTTGGACGATGCCATGTGAATGGCCGGCCTGGTCGCTAATT
TCTTCGCGGAGCGATACGGATATATCGGCCCGTTCGTTTTCTGCCTGTTC
CCTCTCACCCTGGTCGGCATCCTCGCCACGTTATGGTGGCCTGAGAACTA
CGGCGACGCCAACGTGCGGCCCGCGATGGCCCTCCCAAAGGCCTGGAGCT
ACATTCAGAACAACTCCGCCATCATATACTTGGGCCTGGGGCAGTCCTGC
TTTGAGGGTGCCATGTatgccttcgtcttcgtGTGGACCCCGGCActgca
ggcggggggggaggacgtgggcccCTACCTGGGCATCATTTTCAGCACCT
TCATGGTCTGCACGATGACGGGCTCGAAcatcttctccatcctcatcaag
AAGAACCTCCTGACCGTGGTTCCCGTGATGGTGCACCTGATCGCCACCCT
GGCCAACCTGACTGCCTTCTACTTCGTCAAACAGACGTCCTCCGTCTAtg
tggccttcctcctctttgagcTGACCGTAGGCATGTTCTACCCATCCTAC
GGAAGCATCAAGTCCATGAACATCCCTGAGGAAGTGCGCTCAGGCGTGAT
GAACATCTTCCGCATCCCCCTGAACGCGATCATGGTCATCCTCTTGGGCC
TGATCGAGGTCAAGCAGATCAGCATGGGCACCACCCTGGCCCTCTGCACC
CTTATCCATGGCGTCGGCCTCATCATGTATTGGAATTTCGAGCGGTTGAG
GAAGCGGACGCCCGACGTGCACTACGTGAGCGTGAAGGGTCAGGAGGTCT
TGGACGATGCCATGTGA
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Synonyms
Publications