rna6976, rna6976 (mRNA) Nannochloropsis gaditana

Overview
Namerna6976
Unique Namerna6976
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length842
Alignment locationCM002470.1:160693..161414 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF791
Orig transcript idgnl|cribi|Naga_100647g2.2574.mrna
Orig protein idgnl|cribi|Naga_100647g2.2574
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:160693..161414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100647g2gene6742Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6976rna6976-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23713.1cds6960Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6976 ID=rna6976|Name=rna6976|organism=Nannochloropsis gaditana|type=mRNA|length=842bp
TATTTACTTGTTTATAGTGGCCCAAGAAATAATGTGATACGCGCGTGTGC
TTACATTTCCCAGTTATGGATAACAGCGTCTCAAATATCTTCTAATTCTC
TCGTTCCTCGTACTCCCCCCTCCTTCCAGTTTTCTGCGCATTACACAAAT
GACCGCAAGATTGCCACCACAAGGTGATCATAAATTTAGGCGTTTCAATT
GGGAAGTTTTTGGCAAGGTACAGGGAGTATTTTTTAGAAAATATACGAAG
ATGAAAGCACAGGAGTTAGGCGTGTGCGGCTGGTGTATGAATACTGGCGG
GGGAACAGTGATAGGAAGCGCTGAGGGCAGTCCAGAAAGCCTGGAAATTT
TCAGGTGCGCGACAAATTGTAACGGAGGGATATAATTTATTGATATTTTT
TTAATTTGTAGAGTGTGTGTTGGACATGAAGATGACTTCTCCGCAGGGTA
AGTTTGTCGTGAATTCGTGGGACTCTTTAGTGACCCTCCCTCACGATTTT
CTTTATAAAATAATTTCATTTGCCTCTACATCACGTATGTATTGATCCTC
TCTTTTGGTTTTATTTTCTGGATTTCTAGGGAGTGGCTGGAAAAGGAAGG
GTCACCTCTTTCTTCAGTTACAAAGGCAGTTTTTCGGGATGAGGCTCCTA
TCGCCACGTGTAGTTACAATGATTTTGAAATTCGCGGATGATGACTGAAT
ATGTATATTACACTTAACCGAATTGAGTTGCAAGCGTGGTTAAGAAAAGA
GGCATTCAGATGCTCGAGCGTCAACAGGGAGACCAGAAAGGACCTTTTCT
CTGCCTGTCTAAGAAGATGAAAACCTTCTTTGGAGTCAGTTA
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protein sequence of rna6976

>rna6976-protein ID=rna6976-protein|Name=rna6976|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MYTHSLFWAIGACVTTRVLLSSSSKQVVDLTSSNKPSKEHNDISRRGDFK
VFQRSFLTVALLAMFSDWIQGPYSYALYAHYGGLFCRRPGRQLRKEEDVR
RLRRVLYHLLSGQARE
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mRNA from alignment at CM002470.1:160693..161414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6976 ID=rna6976|Name=rna6976|organism=Nannochloropsis gaditana|type=mRNA|length=722bp|location=Sequence derived from alignment at CM002470.1:160693..161414+ (Nannochloropsis gaditana)
ATGTATACTCATTCACTCTTTTGGGCGATTGGGGCATGCGTCACAACTCG
TGTCTTGCTCTCTAGCAGCAGCAAACAAGTCGTGGACCTGACGTCCTCAA
ATAAGCCTTCCAAAGGTACCAAAGTAGGGATATATTTATGTGTGCACAGC
TAATCAGACAGAATTTGTCTTCTTTCTATGCGCTTCATCCTTGTAGAGCG
ACTTGAGACAAACACGGTGACGGAGAAGTTTTTGTGGTAGCTAGTGTCAA
ATTGCCAGAGTATCCCTTGCAAATTTATTTACCCAACCACAAACGACACA
CAGAACACAATGACATATCGCGTCGTGGAGATTTCAAGGTGTTCCAACGT
TCTTTTTTAACGGTAGCCCTCCTGGCCATGTTTTCGGACTGGATCCAGGG
GCCCTATAGCTACGCTCTTTATGCCCATTATGGGTAAGTTTCTCAATTTT
GGCTTACAGAGGCACCTCCTTATTGTAGCCGGTGCAGCATTGTCTTTCAA
ATCCTGTCCGTGGCCTTCGCCCCTGACGCGACCACTTGCATCATCTTCTC
TTGACAGCTTCACACAGGGAGACATCGCCCTGCTCTACATGGGCGGATTC
CTCTCGTCCATGGTAGCGGGCTCTTTTGTCGGCGCCCTGGCCGACAACTa
cggaaggaagaagatgtgCGTCGTCTACGCCGCGTTTTATATCATCTCCT
GTCTGGTCAAGCTCGTGAATAG
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Coding sequence (CDS) from alignment at CM002470.1:160693..161414+

>rna6976 ID=rna6976|Name=rna6976|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at CM002470.1:160693..161414+ (Nannochloropsis gaditana)
ATGTATACTCATTCACTCTTTTGGGCGATTGGGGCATGCGTCACAACTCG
TGTCTTGCTCTCTAGCAGCAGCAAACAAGTCGTGGACCTGACGTCCTCAA
ATAAGCCTTCCAAAGAACACAATGACATATCGCGTCGTGGAGATTTCAAG
GTGTTCCAACGTTCTTTTTTAACGGTAGCCCTCCTGGCCATGTTTTCGGA
CTGGATCCAGGGGCCCTATAGCTACGCTCTTTATGCCCATTATGGCGGGC
TCTTTTGTCGGCGCCCTGGCCGACAACTacggaaggaagaagatgtgCGT
CGTCTACGCCGCGTTTTATATCATCTCCTGTCTGGTCAAGCTCGTGAATA
GATGTATACTCATTCACTCTTTTGGGCGATTGGGGCATGCGTCACAACTC
GTGTCTTGCTCTCTAGCAGCAGCAAACAAGTCGTGGACCTGACGTCCTCA
AATAAGCCTTCCAAAGAACACAATGACATATCGCGTCGTGGAGATTTCAA
GGTGTTCCAACGTTCTTTTTTAACGGTAGCCCTCCTGGCCATGTTTTCGG
ACTGGATCCAGGGGCCCTATAGCTACGCTCTTTATGCCCATTATGGCGGG
CTCTTTTGTCGGCGCCCTGGCCGACAACTacggaaggaagaagatgtgCG
TCGTCTACGCCGCGTTTTATATCATCTCCTGTCTGGTCAAGCTCGTGAAT
AGATGTATACTCATTCACTCTTTTGGGCGATTGGGGCATGCGTCACAACT
CGTGTCTTGCTCTCTAGCAGCAGCAAACAAGTCGTGGACCTGACGTCCTC
AAATAAGCCTTCCAAAGAACACAATGACATATCGCGTCGTGGAGATTTCA
AGGTGTTCCAACGTTCTTTTTTAACGGTAGCCCTCCTGGCCATGTTTTCG
GACTGGATCCAGGGGCCCTATAGCTACGCTCTTTATGCCCATTATGGCGG
GCTCTTTTGTCGGCGCCCTGGCCGACAACTacggaaggaagaagatgtgC
GTCGTCTACGCCGCGTTTTATATCATCTCCTGTCTGGTCAAGCTCGTGAA
TAG
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Synonyms
Publications