rna6970, rna6970 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6970
Unique Name	rna6970
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2167
Alignment location	CM002470.1:136453..137491 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100688g3.1211.mrna
Orig protein id	gnl\|cribi\|Naga_100688g3.1211
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:136453..137491 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100688g3	gene6736	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6970	rna6970-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23719.1	cds6954	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:136453..137491-
coding sequence from alignment at CM002470.1:136453..137491-

mRNA sequence

>rna6970 ID=rna6970|Name=rna6970|organism=Nannochloropsis gaditana|type=mRNA|length=2167bp
AAAACTGTGACCAAGGATGGGTCTATCCAGACATGAGAAGGATGATTTAT
CGCATACATGCACATGTCATATCGAAGACTACCTTCAGGCCTTTTTGTCG
ACTTTGAGTTTATGGTTATAATTTCATGTCACTGCGTGAATCACGAACTC
CCTGTGTACGCAGTGTACGCTGTCAGTAAGAAGCTCACAAAACGAATTCA
AACCCCCCGCTAGACTTAACAGTGCACAATCATGGTAACAGAGAGGACAG
CTATGAAAGATTTGCTGCATGCAGCGACCCAGCTGGCTCCGGCGGGAAAT
GAAGGAGGCTTACGCGAGCAGGGCATGTCTGGGATCTCATTCCCGTCGTG
CCAATCTTCGAAACCGAAAGACCTCACTGCCTCGGCCGCTTCAGGCAAGA
TAAGGACTAGCGTGGGGCAAAGCCGCATGAGCGATCTGCTCTACGAATTC
CCACGCGAGACTGCCAAGGATACGAGGATGGAAGACAGGGATCACGGTGT
TCGCATGAATCCTTTCGCACAGAATTCTACTACTCAGCAAGGTTGGCCTT
CACTGTCCTTCAGCGCGCGTACAGGAATCAATCAAGAGCCCTCCCGAGGT
ACTCTGGGCGTCAGAAGCCACCAGCTTCCCCGGTCCTTCCTTTCCAGCTA
CCAAAATTACCGTCCTGTGCAACCGCACTACCCCTTCGCTTCACATCCTC
TGCAATCACAACAGCAGAGTCGTGCACAGGGGGCTCAGGTCATTGGAGGA
GCATCCATTTCCTTCATCCCTGATGGGTACCTGGCCTCTGGATATCAGGC
TGCTCCCAAGCACCCTCCTGCCTTCGCTCCCTCTGGCTCCATAACTGTGC
CTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCCCCACGACG
TCTTCCTCCTGCACGTCCGTCTCCCCTTCCACGTCTTTCTCCTCCAATTC
CTCTTCGGACGCAGAGGCCTTTTCCAAAAGGCCTGACCCGCTCTTGCCCC
TCGCCCCCCCGGCGGCGTTGGCCACCATTTCCCTCCCGCCGTCCGCCCGG
CGCTCGGAGGGAAAACGGGCCCGTCGGACGGATTTAAGCGGGTACACGCC
TGGAGAGAAACAGGAACGTCGCAAAGAGCGCGCACGCATGTACAGTGCCC
AAGTCCGGGAACGGCAAAATGCCGAGCTGCATGCCCTCCGCCAGCAGGTC
CAGGCGTTGAGTGTGTACAAATTAATGGTGGACGAGGCACCTGAGATATT
TGCCGTCCTCTCTGCGGACAGCCAGGCTAAGGTCCTGTATGCAAACGCAG
CTTTCGCGCGTTTTTTCCTCTGCCATCCCGAGAGCTGCGTGGGGAGGAGC
GTGTGGGAGGTCGTACACCGGGAGGATAAAGAGACTGTGATGGGCGCCTT
CGCCTCGGCTGTGATGGAGAAGGAAGAAGTGGGTCGGGCCCGCTGTCGTC
TGGGAACCTCGAAAGGACAGGGTAGCAAAGAGGCAGGCGGGGCAGGAAGG
GAGGTTCCGGTGGCAGTGTCGGAGGTTCCGGTGGCAGTGTCGGTGCGTAG
AGGGACACAAGGCTTGATCCTTGTGATTCGGCGGGAAGATTGAAAGGGCG
AATTCCTGGCTCGGGGAAGAGGGAGGGAAAAAGGAAAACGAGACGATCGG
GTACAATGTTAGAGCGATCTTTGCGGTCAAGGCAATGTCAAAAGGGAAGA
CCTTCACGCGCGAATGGGAAAAAAAAGAGGAGATGATTGCACAATTGTAA
TACAGAAAAGGGCCGCCGGGGGAGGTAAGCCTAGAAAATGCCCGCAAAAA
AGGAAATGCTGCGGGTGTATGTACGGATTAAAAGTAGGAGCTAAAACCTG
ACGGATAAAGAGCTTTATTCACGTTCATTAAGGGGGGGCCATATGCAGTC
ATTGGGATTGACACGCATGTTTGAGGCTGTCAAACAACACGAAAGGTATG
GATGAGAAGGGCAGCCAGAATGTGAGATCATTGCACACGAGGCACTGTGT
AGTTGCAAGGGTGACCCGGGCTCGCGCGGGGAAGCAACAAATAGAGGGAA
ATGGGGTGAGAGAAGGGGACTTCAAAGTAGCGTGACAGAAAGCTGAGATA
CAATTGAATCTTGCACAACCCACTGGAAAAGGAACTCATTACAAGCACGA
TGATAACAAAGCTGTGA

protein sequence of rna6970

>rna6970-protein ID=rna6970-protein|Name=rna6970|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MPVTFSARQRAQTTKREVPEDVLLASVHETPWAVAALRQLVDYCVSIDND
VGGEPRLVGRCEGSGQEGGETEARETWREFRGVWRGDGGVGSQFSEGGGE
GGRHEEG

mRNA from alignment at CM002470.1:136453..137491-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6970 ID=rna6970|Name=rna6970|organism=Nannochloropsis gaditana|type=mRNA|length=1039bp|location=Sequence derived from alignment at CM002470.1:136453..137491- (Nannochloropsis gaditana)
GAGGGAGGGCGGGCACACGTGAGTCAACACCCGAGCACGCCTCAGCAGTG
GGTGGTGTTCACAGCAGGGCCAATGGGGGCGGGGAAGAGCCACACCCTGC
GTTGGCTGGCGCTCCACGGGCTTTTCCCTTTGAACGATTTCGTGCTGGCA
GATCCGGATGTGATCCGAAACGAGCTCCCCGAAATGAAGGGGTACATCCA
GACCTGCCCGTTACGCGCGGGGCAGCTGACGCACCGGGAGGCGGGCTACA
TGCTGGAGATTGTGGTGGAGGAAGGGTTGAAGGAAGGGAAGAACGTGCTT
GTCCAAGGATCCTTGCGCGACGCGGATTGGCATGCCCGTTACTTTCAGGT
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
GACCATGGGTGCTGGCCTCGACCACGTGGCATTACCGCACTCTATTGTCC
TTTACTTCATGCCCTCAATAATTGCTCTCGCTCCTATTCTGAACCCGGAC
CGCCTGACAGGACCTGCGCGCACGGTTCCCGGGGCTGCGGATTGCCATCA
TCCACGTCACCGCCAGCTGCGAGACGGTGCTGGCCCGGTGAGGCCGGGGG
CGAGGGCGGAGGCGGGGAAGGACACGAGGGGAGGGCTACGGGATTGGACC
GTCGTGAGTCGGGTATGAAGGCTGATGTTCCTCCTCCCTCCTTCCCTCCC
CTCCTTCCCTCCCTTGTTTAATTTCCTGGCAGCGCCCGGCAGAGGGCCCA
GACCACCAAAAGGGAAGTTCCTGAGGACGTGTTGCTGGCCTCTGTGCACG
AAACTCCCTGGGCCGTAGCGGCCCTGCGACAGCTAGTGGATTATTGCGTG
AGCATCGACAATGACGTTGGGGGGGAGCCGCGCCTGGTGGGTCGATGCGA
GGGAAGCGGGCAAGAGGGCGGAGAGACGGAGGCAAGGGAGACATGGAGGG
AATTCCGCGGGGTGTGGCGGGGGGATGGTGGGGTCGGGAGCCAGTTTTCG
GAGGGAGGAGGGGAAGGAGGGAGGCACGAGGAGGGATAG

Coding sequence (CDS) from alignment at CM002470.1:136453..137491-

>rna6970 ID=rna6970|Name=rna6970|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002470.1:136453..137491- (Nannochloropsis gaditana)
CGCCCGGCAGAGGGCCCAGACCACCAAAAGGGAAGTTCCTGAGGACGTGT
TGCTGGCCTCTGTGCACGAAACTCCCTGGGCCGTAGCGGCCCTGCGACAG
CTAGTGGATTATTGCGTGAGCATCGACAATGACGTTGGGGGGGAGCCGCG
CCTGGTGGGTCGATGCGAGGGAAGCGGGCAAGAGGGCGGAGAGACGGAGG
CAAGGGAGACATGGAGGGAATTCCGCGGGGTGTGGCGGGGGGATGGTGGG
GTCGGGAGCCAGTTTTCGGAGGGAGGAGGGGAAGGAGGGAGGCACGAGGA
GGGATAGATGCCCGTTACTTTCAGCGCCCGGCAGAGGGCCCAGACCACCA
AAAGGGAAGTTCCTGAGGACGTGTTGCTGGCCTCTGTGCACGAAACTCCC
TGGGCCGTAGCGGCCCTGCGACAGCTAGTGGATTATTGCGTGAGCATCGA
CAATGACGTTGGGGGGGAGCCGCGCCTGGTGGGTCGATGCGAGGGAAGCG
GGCAAGAGGGCGGAGAGACGGAGGCAAGGGAGACATGGAGGGAATTCCGC
GGGGTGTGGCGGGGGGATGGTGGGGTCGGGAGCCAGTTTTCGGAGGGAGG
AGGGGAAGGAGGGAGGCACGAGGAGGGATAGATGCCCGTTACTTTCAG

Synonyms

Publications