rna6968, rna6968 (mRNA) Nannochloropsis gaditana

Overview
Namerna6968
Unique Namerna6968
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2104
Alignment locationCM002470.1:133104..133371 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100688g1.1212.mrna
Orig protein idgnl|cribi|Naga_100688g1.1212
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:133104..133371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100688g1gene6734Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6968rna6968-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23720.1cds6952Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6968 ID=rna6968|Name=rna6968|organism=Nannochloropsis gaditana|type=mRNA|length=2104bp
TCCTGCGCTCCCTCCCTCCGCCCCTCCTTGAGCCCTCTCGTCACGAACAT
CGGGCACTAAAGCATCCAACCTCCTCATCTCAAACTTGGCCGTCTCCGGC
TCATATATCAACACAAACTCCCTCCCCTGGGTGTGTATCGGCTGCCGGTG
CCCGTGGAACGACAAAGTCGCCCTGCCTTCTTCTTTTTTGTCCTCGTGAT
GTCTGCCAGGGCCAGTTTGGGCCCCCGCCTTCAGAGCATGGTGCACTGTC
ACTCGACCGCTGGGCTCGATATCATAGGTAGCCCCCACGTCATAATCCAC
CGTGCCAGGTTTAAACCGGTATTGAAGAAGAAGGCATTCCTTGCCTGCTA
GTGCAATACCATGCGGGCAAAGCGTCAAATGGGGCAGGGAAGTTTTCGCG
TGGGACCGATCATGAAAGGGAAGAGGGAGCAACACGTACCTTGGTCAAGG
TTTAGATTCACTGGAACTTCACCCCCCGCCGGCCACGGCGATGTACCATT
GCTTGGCATGGCCCGCCACACACCTGTGAACGTGTTGGTCGGAAGGAGTG
CGCGTGAAATGGAGGAAGGGAGGGAGGGAGGGAGTGAGGGAGAGGGAGGG
AGGGAGGGAGGGAGGGCAGTTGCGCGAGGCGCCTTATCCTCTTGCCGATA
ACAAGCAAAGATTGACAACGCGTCTTCATCTTGCTGGATGGACACCCACT
TCAAGGGCCATGAATGCACGCCATGTGTGTTGGGAAAAGTGCGGTGTGTC
GGGGGCGTGTGCTAGGTCTTGGGAATGTGACACGCCACCCCGACAGAACT
CCCCTTCTCTCTTATATCTTCCCGATTTCCTCATGCCCACCATTCCCATG
GCATCCTCCCCGCATGGTACCCCACAGATAGGGAGCAAACGCTACTAGAC
ACGCGTTGTGGCCACATTCGTGGTGGCGGGTTGCTTTTGCGTTCGTAAGC
AGGGGTCAATCGCGTGACAGGGCTGACACGAGGCGTGCGCGGAGAGAAGG
AGGGCACCGAATTCGCTTTTTGGATTGCATATGGCGGAAGTCTTCCCGTC
CCCGCCAATCTTGGGGAAGCGTCGTCCAGGCGGATACAATGATAACAGCA
CCAATACGTCCATGGTATGCAATGACGCCTGGGGTGAAGCCACTGCCATG
GAGGGGGAGGAGAACCTCGGCAGCGGGTCACCGGGGGGATCGATGCGTCA
TTTGAACACCTCGTTTCACCGGGCGGGGCACAAGCGTCGTCGGGCCGCAG
AAGCGATGGAAGATGGGGAAGGTGGTGGAGAAGAAAGAGAAGGAGGAAGG
CTTGGGTGGGAGGGCTCAGGCATGCCCCAGCATCGTCCTGGACGCCACGA
AACGAAAGCGCATGGAAGCGCTCTCCCAGCACAGCCAACCACCCACCCGC
TGATTTCGGCGGAAATGTTGTGCGCAAGCAGGGAAGATGCTGAGACGTTG
GGGGTAGACGGAAGAGGGGCACGGTTGGAATTTGGGATGGAGGGGTTGCG
TCAGAGCACGGGGCCGGGACCGATGGATGGTTACGGGGGAAAAGATGGCG
TGAAAGGGAGCAGGAAGGCGAACAGGGTAGGGATGGGGAGGGAGCACGTC
CACGTGTCGGCCATGGAGCCGAGTGGAATCGAAGCACGAGAGGCAGTTGG
GGGAGTCGGAGGAAACGCGACGCATTTGTTGACCCGCCTCCGGGAAAAGG
AAGCAGAAACGGCGCGGTTGCTAGCGGAGGACGCCGGGCTACGGCAAGCC
TTGGGCCGGGCGCAAGAGCAAGTGGGTAGTCTGGACCGTGATACCCGGAT
TTTGAAGAAGGGCTTGGCTTACCAGAACGCGAAACTCGCCAAGGCGGAGG
AGGAGGTGGAGCAGCTGCGGCAGGGGAATCGGCAGGCGCTGGAATACATC
GGTCGGTTGGAAGAGGCCAACCGTCTCTTGTGTCAACGCGTGATGGGATT
GGAGGGAGGGAGGAGCGGCGGGGATGGAGGGGGCGGGGAAGGAGGGGGGG
GGATGTGGGGAGGGGGAGGGGGAGGGGGAGGGCGGCATGGTATATTGAGA
GGAAGGGAAAGGAGGAGGATGTATGGAGAGGGGTCAAATAGAGTTGTATC
ATGA
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protein sequence of rna6968

>rna6968-protein ID=rna6968-protein|Name=rna6968|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MYPSTTSVDTASIHILYSLKRYTARMLEHIALLWASLSLKRMARWLIAQS
LSSRRFGLQMCSGRRPT
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mRNA from alignment at CM002470.1:133104..133371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6968 ID=rna6968|Name=rna6968|organism=Nannochloropsis gaditana|type=mRNA|length=268bp|location=Sequence derived from alignment at CM002470.1:133104..133371- (Nannochloropsis gaditana)
ATGTATCCTTCGACAACGTCTGTTGACACTGCGTCAATCCATATTCTCTA
CAGCCTCAAAAGGTACACCGCACGCATGCTAGAGCACATTGCGTCTGATC
CTTTTCATGTTTCATAGAGCATTTAAAATCGCTGGATTCTAAAATTGTAT
TCGAAGTTTGCTCTGGGCTTCTTTGAGCCTCAAACGCATGGCTCGTTGGC
TTATAGCACAGAGTCTAAGTAGTAGGAGATTTGGCTTGCAAATGTGTTCA
GGAAGGCGACCTACTTAG
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Coding sequence (CDS) from alignment at CM002470.1:133104..133371-

>rna6968 ID=rna6968|Name=rna6968|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002470.1:133104..133371- (Nannochloropsis gaditana)
TTTGCTCTGGGCTTCTTTGAGCCTCAAACGCATGGCTCGTTGGCTTATAG
CACAGAGTCTAAGTAGTAGGAGATTTGGCTTGCAAATGTGTTCAGGAAGG
CGACCTACTTAGATGTATCCTTCGACAACGTCTGTTGACACTGCGTCAAT
CCATATTCTCTACAGCCTCAAAAGGTACACCGCACGCATGCTAGAGCACA
TTGCTTTGCTCTGGGCTTCTTTGAGCCTCAAACGCATGGCTCGTTGGCTT
ATAGCACAGAGTCTAAGTAGTAGGAGATTTGGCTTGCAAATGTGTTCAGG
AAGGCGACCTACTTAGATGTATCCTTCGACAACGTCTGTTGACACTGCGT
CAATCCATATTCTCTACAGCCTCAAAAGGTACACCGCACGCATGCTAGAG
CACATTGC
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Synonyms
Publications