rna6963, rna6963 (mRNA) Nannochloropsis gaditana

Overview
Namerna6963
Unique Namerna6963
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationCM002470.1:123212..124581 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101519g3.7372.mrna
Orig protein idgnl|cribi|Naga_101519g3.7372
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:123212..124581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101519g3gene6729Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23726.1cds6947Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6963rna6963-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6963 ID=rna6963|Name=rna6963|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
ATGGAAGGCTTTACAGTCCACAAGAACGTCCATGACATCAGTCGAAGTCC
TAAAAAGGAGAATATTAGCCCGAAAATGGATCTGAGGGACAGCAGCCCTG
GGATAAGCACCGAATCTGGACCAAAAGGGGGCAAGAGAACTAAGCAAAGA
CGAGCAAAGTACACAAAAGATTCGTGGAGAGAAGACCGTGAACAAGGGCA
CAAAAATACCACCAACCCGCGTGCAACGTCTTTAAAATCGCAGCAAAACG
GAGTGATGGCGCGCTCCGAGAAGCTTTCTAGGTTGTCGATAGGCCCGCGT
CCTGGAAATGCTGTTCATCCGACGGACGCCACGCTCAGCCATCCCCACGA
TGGAAAGAAGCATGTTGGCAAGCCAACACCGACACAAAAGAGGCACGGCC
GAGTCGCCCAGAAAGAAAATCGGGGTAGCAACCACAGCAGCCGTCCACAA
GTCCATCCGGGCAGCGCCTCCACCCTCATCAACCTCTGCACCCGCACACT
GGAATGCTACCAGAAGAAAGCGTCTCCCCGCACATGCACAGCAAGACAAG
CGGTGTCATTCTTCCCGCCCCGGCGTTCCCTTCTCCCTCTGTGGACTTGA
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protein sequence of rna6963

>rna6963-protein ID=rna6963-protein|Name=rna6963|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MQEAAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLP
PPSLTLLVDPVMHDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQ
GFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGE
HCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREE
GEEPRSLYYEPHCRFKVEEFEVREG
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mRNA from alignment at CM002470.1:123212..124581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6963 ID=rna6963|Name=rna6963|organism=Nannochloropsis gaditana|type=mRNA|length=1370bp|location=Sequence derived from alignment at CM002470.1:123212..124581- (Nannochloropsis gaditana)
TCTGACTCGGTGCCGCTAGTCATATTTACACACTCCATGGACCCATTCAA
TGGATCACAACCTTCCTCAAGTGCACAGACACAACGCCATGACCGCTCCC
TCCATCGTGCTGGCCGGGTGCATGGTTTTTATGGCAATTGCAGTAAGTCC
GGGAGGAAACTGTGTCTAACCCCGTTTCTCCATCTCTCGCATGACTGCGT
TTTGTTCTTTTGAGGTGGCAAACTCAGATGCAACGACGGGCCTCGGTACT
TCATGACGGCTCGATATGAAACTGATTTGAATAGACACGAACGCTTGGTG
GCACATTTAATGTGCCTGCGATGGCGCATGTATGGGCGGCACCCTGCGCG
CACGCCCTCAGCAGAGGTGTCCCTGTCTCCTATCCTCTGTGATGCGTCCA
TAGACTGCGATACCACATTCTTATAGTGCCATCATAGCCTTTGTGGCTAC
TTTTGTGTACCTTCGCTTTTCGCTGCCAAAATGAGGCCCCTTGTGTCACG
TCAGCATCCATTCCGTTCCACCCTCCCCTTTCCGGCTTTCTGACTACTGG
AGACACCCTCGACGCCCGCCCTGACCTTTCTTTTTCCCACCATTTTCCAC
AACTTCAATACCAAGCCACAGCATGCTTTCCTCCAGCCTCCTCCCCTCTT
CCATCCTCCTCGCCGCGTCAGCTCCCTCCCCCGGTCCTGCCTCACCATGC
AGGAGGCGGCCGGAGTCGTCTCACCCTCCTCCTCCTCTACCTCTACCTCC
TCCTCCCCCTCCTCCCTCCGCCTCACCTTCCTGGAATCCAATTCCTGGCT
CTGGGAAATCCCTCTGCCTCCTTCCTCCCTCCCCCCCTCTCTCCCTCCCC
CCTCCCTGACGTTGCTCGTGGACCCCGTGATGCATGATTTAACCTTTGGT
GCCCCCGCCCTCATCCGCGGCAAGAAAAAAGTACTGAACGGCCCAGCCGT
GATGGAATCGCTCGCGCCAAGAGTAGATCACTTGCTCATCTCCCAAGGAT
TTGACGACCACTGTCAACCGGCTTCCATAGCCATGGCGGCCCGCCTCCTC
CCCCCTTCCGCCCACATCGTCGCGCCCCAATCGGCGTCGAAGGTTCTGGA
AACTTTTTTCTCCCCCGAACGGATTCACTACCTCTCTCCGGGGGAGCATT
GCTACCTGGAAAAAAGGCGGGAAGGAGGGCGGGACGGAGGGCGGGTTAAG
GTGACGGCAACGACGGGAGATACCTTAGGACCCCCTTGGCAAGCGCCTGA
GAACGGTTATTTGTTGGAGTGGGGGGAGAAAGGAGGGAGAGAGGAAGGGG
AGGAGCCTCGGTCTTTGTACTATGAGCCCCACTGTCGATTCAAGGTGGAG
GAGTTCGAGGTGAGGGAGGG
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Coding sequence (CDS) from alignment at CM002470.1:123212..124581-

>rna6963 ID=rna6963|Name=rna6963|organism=Nannochloropsis gaditana|type=CDS|length=674bp|location=Sequence derived from alignment at CM002470.1:123212..124581- (Nannochloropsis gaditana)
ATGCAGGAGGCGGCCGGAGTCGTCTCACCCTCCTCCTCCTCTACCTCTAC
CTCCTCCTCCCCCTCCTCCCTCCGCCTCACCTTCCTGGAATCCAATTCCT
GGCTCTGGGAAATCCCTCTGCCTCCTTCCTCCCTCCCCCCCTCTCTCCCT
CCCCCCTCCCTGACGTTGCTCGTGGACCCCGTGATGCATGATTTAACCTT
TGGTGCCCCCGCCCTCATCCGCGGCAAGAAAAAAGTACTGAACGGCCCAG
CCGTGATGGAATCGCTCGCGCCAAGAGTAGATCACTTGCTCATCTCCCAA
GGATTTGACGACCACTGTCAACCGGCTTCCATAGCCATGGCGGCCCGCCT
CCTCCCCCCTTCCGCCCACATCGTCGCGCCCCAATCGGCGTCGAAGGTTC
TGGAAACTTTTTTCTCCCCCGAACGGATTCACTACCTCTCTCCGGGGGAG
CATTGCTACCTGGAAAAAAGGCGGGAAGGAGGGCGGGACGGAGGGCGGGT
TAAGGTGACGGCAACGACGGGAGATACCTTAGGACCCCCTTGGCAAGCGC
CTGAGAACGGTTATTTGTTGGAGTGGGGGGAGAAAGGAGGGAGAGAGGAA
GGGGAGGAGCCTCGGTCTTTGTACTATGAGCCCCACTGTCGATTCAAGGT
GGAGGAGTTCGAGGTGAGGGAGGG
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Synonyms
Publications