EWM23726.1, cds6947 (CDS) Nannochloropsis gaditana

Overview
NameEWM23726.1
Unique Namecds6947
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:123212..123885 -

Link to JBrowse

Properties
Property NameValue
Start range123212
Start range.
Protein idEWM23726.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101519g3.7372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:123212..123885 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
Homology
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|585104888|gb|EWM23726.1| (hypothetical protein Naga_101519g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 455.292 bits (1170), Expect = 6.818e-162
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MQEAAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVMHDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFEVREG 225
            MQEAAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVMHDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFEVREG
Sbjct:    1 MQEAAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVMHDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFEVREG 225          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|298712683|emb|CBJ48708.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 150.599 bits (379), Expect = 6.293e-41
Identity = 85/199 (42.71%), Postives = 110/199 (55.28%), Query Frame = 0
Query:   23 SLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVMHDLTFGAPALIRGKKKVL-NGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEF 220
            +++LT+LE NSW+WE+               + +LVDPV   + FG P L++  K+VL +G   M  LA   D L+ISQGFDDHC P +I   + LL PS  +VAP SA  VLE  F   RI Y+ PG+   L     GGR    V++ ATTG  LGPPWQ  ENG ++      G E+  E  SLY+EPH  F   E 
Sbjct:   26 AIKLTYLELNSWMWEVN-------------GINILVDPVFGTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPPTIKGLSGLLKPSVRLVAPPSAKAVLEEHFPASRITYILPGQSTVLSA---GGR---AVEIKATTGAILGPPWQQAENGVIVRPVAADGDEKDPEGGSLYFEPHLFFDESEL 205          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|1040924226|ref|XP_017224317.1| (PREDICTED: uncharacterized protein LOC108200611 [Daucus carota subsp. sativus])

HSP 1 Score: 130.183 bits (326), Expect = 1.063e-32
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 0
Query:    5 AGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRF 215
            + VVS   +  S+SS   + +LT+LE NSWLWE+               LT+LVDP++  +L FG P L    KK L    +  S  P++D+LLI+Q  DDHC   ++   A++LP + +++A  +A  +L+  F  + + YL PG+   +        DG RVKV AT G  LGPPWQ PENGYL+         +G+   +LY EPHC +
Sbjct:   57 SAVVSEEQAVDSSSSGVDTFKLTYLEGNSWLWEVG-------------GLTILVDPILVGNLDFGIPWLYDAAKKFLKTYKL--SSLPKIDYLLITQSLDDHCHMKTLEPLAQMLP-NLNVIATLNAKALLDPVF--KNVVYLEPGQSFEM-----AASDGSRVKVKATAGPVLGPPWQRPENGYLVT------SPQGQ--LTLYLEPHCVY 237          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|255576525|ref|XP_002529154.1| (PREDICTED: uncharacterized protein LOC8260404 [Ricinus communis] >gi|223531433|gb|EEF33267.1| conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 129.028 bits (323), Expect = 2.323e-32
Identity = 79/219 (36.07%), Postives = 118/219 (53.88%), Query Frame = 0
Query:    4 AAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFE 221
             + VVS  ++  S+S +  +++LT+LE NSWLWE+               + LLVDP++  +L FG P L    KK++    + +   P VD LLI+Q  DDHC   ++   +  LP +  I+A  +A  +L+  F    + YL PGE+  +E     G++G +V+V AT G  LGPPWQ PENGYL+         +G+   +LYYEPHC +     E
Sbjct:   55 VSAVVSEETAVGSSSGTNDAIKLTYLEGNSWLWEVS-------------GINLLVDPILVGNLDFGIPWLYDAAKKLIKNFQLND--LPEVDSLLITQSLDDHCHLKTLKPLSEKLP-NIRIIATPNAQPLLDPLFC--NVTYLEPGENAEIE-----GKNGSKVRVQATAGPVLGPPWQRPENGYLV------SSPQGQ--MTLYYEPHCVYDKNFLE 242          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|672118175|ref|XP_008782288.1| (PREDICTED: uncharacterized protein LOC103701860 [Phoenix dactylifera])

HSP 1 Score: 128.257 bits (321), Expect = 6.120e-32
Identity = 79/209 (37.80%), Postives = 114/209 (54.55%), Query Frame = 0
Query:    9 SPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFK 216
            SP ++S   S + S +RLT+LE NSWLW++               +++LVDP++  +L FG P L  G KKVL     +E L P +D L+I+Q  DDHC   ++   ++ LP    ++A  +A  +L   F+   + YL PG+   +E     GR G RV + AT G  LGPPWQ PENGY+++ G+           SLYYEPHC + 
Sbjct:   57 SPRATSALVSETTSPIRLTYLEVNSWLWDVG-------------GVSILVDPLLVGNLDFGLPWLFDGAKKVLKK-FQLEDL-PEIDCLVITQSLDDHCHVRTLTPLSKKLP-DLPVIATPNAEGILRPLFN--NVIYLEPGQSSDVE-----GRHGARVNICATAGPVLGPPWQRPENGYMVKCGQSH--------LSLYYEPHCVYN 234          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|802680898|ref|XP_012082037.1| (uncharacterized protein LOC105641988 [Jatropha curcas] >gi|643718015|gb|KDP29371.1| hypothetical protein JCGZ_18292 [Jatropha curcas])

HSP 1 Score: 127.102 bits (318), Expect = 1.695e-31
Identity = 80/214 (37.38%), Postives = 114/214 (53.27%), Query Frame = 0
Query:    4 AAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFK 216
             + V+S  S+  S+S+     +LT+LE NSWLWE+               + +LVDP++  +L FG P L    KK L    +  S  P VD LLI+Q  DDHC   ++   + +LP +  ++A  +A  +L+  FS   + YL PG+   +E      RDG +VKV AT G  LGPPWQ PENGYL+         +G+   +LYYEPHC + 
Sbjct:   58 VSAVISEESAVGSSSAGTDVFKLTYLEGNSWLWEVG-------------GVKILVDPILVGNLDFGIPWLYDAAKKFLKNFQL--SNLPEVDCLLITQSLDDHCHLKTLKPLSEILP-NLRVIATPNAKPLLDPRFS--NVTYLEPGQSSEIE-----ARDGSKVKVQATAGPVLGPPWQRPENGYLV------NSPQGQ--LTLYYEPHCVYN 240          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|719967843|ref|XP_010263075.1| (PREDICTED: uncharacterized protein LOC104601444 [Nelumbo nucifera])

HSP 1 Score: 127.102 bits (318), Expect = 3.655e-31
Identity = 78/219 (35.62%), Postives = 115/219 (52.51%), Query Frame = 0
Query:    4 AAGVVSPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFE 221
             + VVS  ++  STS+     +LT+LE NSWLW++               + +LVDP++  +L FG P L    KKVL    + +   P VD LLI+Q  DDHC   ++   + + P +  ++A  +A  +L   FS   + YL PG+   +E     G++G +V V AT G  LGPPWQ PENGYL+ +         ++  +LYYEPHC +  E  E
Sbjct:   96 VSAVVSEENAVGSTSAGTYLFKLTYLEGNSWLWDVG-------------GVKILVDPILVGNLDFGIPWLYDAAKKVLKNFRLSD--LPEVDCLLITQSLDDHCHLKTLKPLSEMFP-NLRVIATPNAEAMLNPLFS--NVTYLEPGQSSEIE-----GKNGLKVIVKATAGPILGPPWQRPENGYLITY--------RQDCLTLYYEPHCVYNKEFLE 283          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|1130666380|ref|XP_010926486.2| (PREDICTED: uncharacterized protein LOC105048747 isoform X2 [Elaeis guineensis])

HSP 1 Score: 127.102 bits (318), Expect = 1.794e-30
Identity = 78/209 (37.32%), Postives = 111/209 (53.11%), Query Frame = 0
Query:    9 SPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFK 216
            SP ++S   S + S +RLT+LE NSWLW +               +++LVDP++  +L FG P L  G KKVL    V +   P +D L+I+Q  DDHC   ++   ++ LP    I  P +A  +L   F+   + YL PG+   ++     G+ G RV V AT G  LGPPWQ PENGY+++ G+           SLYYEPHC + 
Sbjct:  243 SPRATSAVVSETTSPIRLTYLEVNSWLWVVG-------------GVSILVDPLLVGNLDFGLPWLFDGAKKVLKKFQVED--LPEIDCLVITQSLDDHCHVRTLTRLSKKLPDLPVIATP-NAEGILRPLFN--NVTYLEPGQSSDVD-----GKHGARVNVCATAGPILGPPWQRPENGYIVKCGQSH--------LSLYYEPHCVYN 420          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|1130666378|ref|XP_010926485.2| (PREDICTED: uncharacterized protein LOC105048747 isoform X1 [Elaeis guineensis])

HSP 1 Score: 127.102 bits (318), Expect = 2.062e-30
Identity = 78/209 (37.32%), Postives = 111/209 (53.11%), Query Frame = 0
Query:    9 SPSSSSTSTSSSPSSLRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFK 216
            SP ++S   S + S +RLT+LE NSWLW +               +++LVDP++  +L FG P L  G KKVL    V +   P +D L+I+Q  DDHC   ++   ++ LP    I  P +A  +L   F+   + YL PG+   ++     G+ G RV V AT G  LGPPWQ PENGY+++ G+           SLYYEPHC + 
Sbjct:  243 SPRATSAVVSETTSPIRLTYLEVNSWLWVVG-------------GVSILVDPLLVGNLDFGLPWLFDGAKKVLKKFQVED--LPEIDCLVITQSLDDHCHVRTLTRLSKKLPDLPVIATP-NAEGILRPLFN--NVTYLEPGQSSDVD-----GKHGARVNVCATAGPILGPPWQRPENGYIVKCGQSH--------LSLYYEPHCVYN 420          
BLAST of EWM23726.1 vs. NCBI_GenBank
Match: gi|470122208|ref|XP_004297137.1| (PREDICTED: uncharacterized protein LOC101304764 [Fragaria vesca subsp. vesca])

HSP 1 Score: 124.02 bits (310), Expect = 3.032e-30
Identity = 78/220 (35.45%), Postives = 114/220 (51.82%), Query Frame = 0
Query:    4 AAGVVSPSSSSTSTSSSPSS-LRLTFLESNSWLWEIPLPPSSLPPSLPPPSLTLLVDPVM-HDLTFGAPALIRGKKKVLNGPAVMESLAPRVDHLLISQGFDDHCQPASIAMAARLLPPSAHIVAPQSASKVLETFFSPERIHYLSPGEHCYLEKRREGGRDGGRVKVTATTGDTLGPPWQAPENGYLLEWGEKGGREEGEEPRSLYYEPHCRFKVEEFE 221
             + +VS  ++ TS+SS  +   +LT+LE NSWLW++               + LLVDP++  +L FG P L    K+ L    + +   P VD LLI+Q  DDHC   ++   +   P +  ++A  +A  +L+  FS   + YL PG+   +E      R+G +VKV AT G  LGPPWQ PENGYL+           +E  +LYYEPHC +     E
Sbjct:   64 VSALVSEENAVTSSSSDDTDGFKLTYLEGNSWLWDVG-------------GVKLLVDPILVGNLDFGIPWLYDAAKRFLKNFQLTD--VPEVDCLLITQSLDDHCHLKTLKPLSEKYP-TLRVIATPNAKALLDPLFS--NVTYLEPGQSSTIE-----ARNGAKVKVQATAGPVLGPPWQRPENGYLV--------ISPQEKLTLYYEPHCVYNTGSVE 252          
The following BLAST results are available for this feature:
BLAST of EWM23726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104888|gb|EWM23726.1|6.818e-162100.00hypothetical protein Naga_101519g3, partial [Nanno... [more]
gi|298712683|emb|CBJ48708.1|6.293e-4142.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|1040924226|ref|XP_017224317.1|1.063e-3237.74PREDICTED: uncharacterized protein LOC108200611 [D... [more]
gi|255576525|ref|XP_002529154.1|2.323e-3236.07PREDICTED: uncharacterized protein LOC8260404 [Ric... [more]
gi|672118175|ref|XP_008782288.1|6.120e-3237.80PREDICTED: uncharacterized protein LOC103701860 [P... [more]
gi|802680898|ref|XP_012082037.1|1.695e-3137.38uncharacterized protein LOC105641988 [Jatropha cur... [more]
gi|719967843|ref|XP_010263075.1|3.655e-3135.62PREDICTED: uncharacterized protein LOC104601444 [N... [more]
gi|1130666380|ref|XP_010926486.2|1.794e-3037.32PREDICTED: uncharacterized protein LOC105048747 is... [more]
gi|1130666378|ref|XP_010926485.2|2.062e-3037.32PREDICTED: uncharacterized protein LOC105048747 is... [more]
gi|470122208|ref|XP_004297137.1|3.032e-3035.45PREDICTED: uncharacterized protein LOC101304764 [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6963rna6963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications