rna6959, rna6959 (mRNA) Nannochloropsis gaditana

Overview
Namerna6959
Unique Namerna6959
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1257
Alignment locationCM002470.1:106924..108162 +

Link to JBrowse

Properties
Property NameValue
Productcytochrome c1 heme lyase
Orig transcript idgnl|cribi|Naga_100734g3.9484.mrna
Orig protein idgnl|cribi|Naga_100734g3.9484
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:106924..108162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100734g3gene6725Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6959rna6959-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23732.1cds6943Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6959 ID=rna6959|Name=rna6959|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
AAACGACAAAGAAGAGACGGCGTCACTTTCAATCCCCATTTTTATTCTTA
CGCATGAATTAAATGATCAATACTGTGGTCGATGCCACGAAAAAATGTTT
TTAAAATTCCGGAAAGAAGTTCATATACCGCCTTTAACCTCCCCGTCGTC
TTTTGTATCTCACCATAACCATGCAGTGTCTACGGTAATTTCCATTGAAA
TCTTCTTGAATTCTTGGGATAAAGGCGGAAACCCCTGTCTGACGCAACAA
TGACGCCGGGTCGAGTGTAGCTTGCACAGTGTGGGAATTGCAAGGTTGAA
AAGGCTTGTGCTGGGAGTCTATTCTCAAAACCAAGTAACATTCCTGTTTT
CCCTCCCTGCCTCACACCCCTCAAATGAACGTCCTATTCTTGTCACCATG
CCCATACCATTGATGTATGGCTGTTGGGCCATGTCGGAATCGTATCGAAG
AGCAGTAGGAGGACGCCTCAAGATCGGTGGGAAAGAGGTGGATGTCTCGA
GGAAGAAGAAAGGGAAAAAAAAGCGCCTCCGCACCGAGGAAGAAAATCTT
GAGGCCGATCCAGACCCGCGTCGGGTCTTGAAGCATTCGAAGGAGGAAGG
GAACGACGGCGGTAGCGGTGCGGAGGAGGGAGAGACCCCCCTGCTGCAGG
CTAAGGCAGGAAGCGGGCGAATCACGAGCAGTGGCCAAGTTGTCACAGGG
TACGAGACCGAATTCTTGCAAGAATTACGGGTGAACGACGCCTTGATCAT
CACGCACCCGAGCACGTTGATGGAGGAGACGCGGATCGTGAAAATGATCG
TCAGCAACAAGGGGCTTTCCCTCTCTTCCCCCTTCTCGAGCGACTTGATC
ACCACCACCCGGTTCCGCTACATCCATCCGCCGGAAGAAGACGAAGAAGG
GGGGAGAGAAGCCCGGGAGGAGGAGCGACGGCGGCAGGAGAAGGCGGGGG
AGGAGGAGAAAGCTTTTGGGACGTATGGGGGCGCGGGGGGGTCGAAATTG
GTATATAGGGTGAAGAAAACAGGGACGTACGGAGGGTATCGGATCGTCAC
GGAGGATACGGGGGCGAGCCTCTCAAGGACGGAGCTTTTGGAGAGGCGGC
TGCAGCATAAGAGTGACCGGCACGCGAATTGAGAGCAGGGAAAAGGTTGG
ATAGGAAGTACAAATAAAAGGAGCCGTACTGCGAATGAAAAGCATGCAAA
AGTTTGGATGGGAAGTACGAATGAAAGAGGATCACCCAAGGAGAATTGCT
TTCCAGG
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protein sequence of rna6959

>rna6959-protein ID=rna6959-protein|Name=rna6959|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MAAEPSQARGTEPSEACLVKNSSNRSDPVRHPPTGTNGFFSALRGWFHPS
NPSDSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPL
STSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQD
VGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWL
WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVR
PALDSMAAVRMRVGRTVDEWKEEWFGKEGGKDRMLPAWTATFTAMVGGRE
GVGEGGKEGERGGVVPGAGGASK
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mRNA from alignment at CM002470.1:106924..108162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6959 ID=rna6959|Name=rna6959|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp|location=Sequence derived from alignment at CM002470.1:106924..108162+ (Nannochloropsis gaditana)
TTCATATAGGTTGCAGCATGGCAGCAGAGCCGTCACAGGCGCGGGGCACG
GAACCCAGTGAGGCCTGCCTGGTCAAAAATAGCAGCAACCGCAGCGACCC
GGTGCGACACGTAAGTACCTCCTGGATTGCCTCTTCCGGACTCTCTGTGT
CCTTGCCACGCTTGCATGACACTCTTGCCACAGATATGCACGTAGGATAT
CATTTCTGCTTTTTGACTGAGGCCCTATGATTTTTCCCACAGCCACCCAC
AGGCACCAATGGtttcttctccgccctccgGGGATGGTTCCATCCTTCCA
ACCCCTCAGATTCCACAGAGCTGGAATCAAATAGCAGCGGATGCCCGGTC
CAAGGACGCGCTTCTcccccgtcatcctcccctgtcAATCCTTTAAACAA
CGAACGTCAATACTCCCAGGTCCCGCAGCCCTCTCAAGCcgttcccctct
ccacctcccgggAAATCTCGTCCATCCCCAAATCAGATTTTACGCCCAAG
CACCAACCGAAATGGGCAGGTGACAAATGGGTGTACCCCTCGGAGCAACA
ATACTTCAACGCGATGAAATCGAAAGGCTTCGACCCGCTTCCCCAGGACG
TGGGCATCATCCTGGCCATCCACAACGCCGTGAACGAACAGGGCTGGCGG
AAGGTgctggaatgggagggaggcttgggTAGTACCCCGCCAAAGCTGAA
ACGCTTCATGGGCCGTCCGCAAGACCTCTCGCCCAAGGCGGCGTGGCTCT
GGATGTGCGGGTACAACAAGCCCTTCGACCGGCACGATTGGGTGGTGGAG
CGAGCGGACGGATCGGAAGTCCGTTACGTGATCGATTTTTACACGGGGCA
GACGGACGTCAAGGACCCCAAGCCTGTCTCCATGCATTTGGATGTCCGCC
CGGCCTTGGATTCCATGGCAGCGGTGCGCATGCGGGTCGGACGGACAGTG
GACGAGTGGAAAGAGGAGTGgtttggaaaggagggagggaaagaccgCAT
GTTACCAGCTTGGACGGCAACATTTACAGcgatggtgggagggagggaag
gagtgggggagggagggaaggagggggagaggggtggcGTTGTACCAGGC
GCTGGAGGGGCTTCAAAATAGAAGAGTGGGACATGTGGCTTGTTGCTTTA
TCCTGGAAGAATCGAACGACATATTTCTTGAGCCCCGGTGACACTCTGCA
GGGGCATTTATGGTAAGGTTTTGCTTCGGTGCCGTGCAA
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Coding sequence (CDS) from alignment at CM002470.1:106924..108162+

>rna6959 ID=rna6959|Name=rna6959|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002470.1:106924..108162+ (Nannochloropsis gaditana)
ATGGCAGCAGAGCCGTCACAGGCGCGGGGCACGGAACCCAGTGAGGCCTG
CCTGGTCAAAAATAGCAGCAACCGCAGCGACCCGGTGCGACACCCACCCA
CAGGCACCAATGGtttcttctccgccctccgGGGATGGTTCCATCCTTCC
AACCCCTCAGATTCCACAGAGCTGGAATCAAATAGCAGCGGATGCCCGGT
CCAAGGACGCGCTTCTcccccgtcatcctcccctgtcAATCCTTTAAACA
ACGAACGTCAATACTCCCAGGTCCCGCAGCCCTCTCAAGCcgttcccctc
tccacctcccgggAAATCTCGTCCATCCCCAAATCAGATTTTACGCCCAA
GCACCAACCGAAATGGGCAGGTGACAAATGGGTGTACCCCTCGGAGCAAC
AATACTTCAACGCGATGAAATCGAAAGGCTTCGACCCGCTTCCCCAGGAC
GTGGGCATCATCCTGGCCATCCACAACGCCGTGAACGAACAGGGCTGGCG
GAAGGTgctggaatgggagggaggcttgggTAGTACCCCGCCAAAGCTGA
AACGCTTCATGGGCCGTCCGCAAGACCTCTCGCCCAAGGCGGCGTGGCTC
TGGATGTGCGGGTACAACAAGCCCTTCGACCGGCACGATTGGGTGGTGGA
GCGAGCGGACGGATCGGAAGTCCGTTACGTGATCGATTTTTACACGGGGC
AGACGGACGTCAAGGACCCCAAGCCTGTCTCCATGCATTTGGATGTCCGC
CCGGCCTTGGATTCCATGGCAGCGGTGCGCATGCGGGTCGGACGGACAGT
GGACGAGTGGAAAGAGGAGTGgtttggaaaggagggagggaaagaccgCA
TGTTACCAGCTTGGACGGCAACATTTACAGcgatggtgggagggagggaa
ggagtgggggagggagggaaggagggggagaggggtggcGTTGTACCAGG
CGCTGGAGGGGCTTCAAAATAGATGGCAGCAGAGCCGTCACAGGCGCGGG
GCACGGAACCCAGTGAGGCCTGCCTGGTCAAAAATAGCAGCAACCGCAGC
GACCCGGTGCGACACCCACCCACAGGCACCAATGGtttcttctccgccct
ccgGGGATGGTTCCATCCTTCCAACCCCTCAGATTCCACAGAGCTGGAAT
CAAATAGCAGCGGATGCCCGGTCCAAGGACGCGCTTCTcccccgtcatcc
tcccctgtcAATCCTTTAAACAACGAACGTCAATACTCCCAGGTCCCGCA
GCCCTCTCAAGCcgttcccctctccacctcccgggAAATCTCGTCCATCC
CCAAATCAGATTTTACGCCCAAGCACCAACCGAAATGGGCAGGTGACAAA
TGGGTGTACCCCTCGGAGCAACAATACTTCAACGCGATGAAATCGAAAGG
CTTCGACCCGCTTCCCCAGGACGTGGGCATCATCCTGGCCATCCACAACG
CCGTGAACGAACAGGGCTGGCGGAAGGTgctggaatgggagggaggcttg
ggTAGTACCCCGCCAAAGCTGAAACGCTTCATGGGCCGTCCGCAAGACCT
CTCGCCCAAGGCGGCGTGGCTCTGGATGTGCGGGTACAACAAGCCCTTCG
ACCGGCACGATTGGGTGGTGGAGCGAGCGGACGGATCGGAAGTCCGTTAC
GTGATCGATTTTTACACGGGGCAGACGGACGTCAAGGACCCCAAGCCTGT
CTCCATGCATTTGGATGTCCGCCCGGCCTTGGATTCCATGGCAGCGGTGC
GCATGCGGGTCGGACGGACAGTGGACGAGTGGAAAGAGGAGTGgtttgga
aaggagggagggaaagaccgCATGTTACCAGCTTGGACGGCAACATTTAC
AGcgatggtgggagggagggaaggagtgggggagggagggaaggaggggg
agaggggtggcGTTGTACCAGGCGCTGGAGGGGCTTCAAAATAG
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Synonyms
Publications