EWM23732.1, cds6943 (CDS) Nannochloropsis gaditana

Overview
NameEWM23732.1
Unique Namecds6943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:106941..107033 +
Alignment locationCM002470.1:107166..108044 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23732.1
Productcytochrome c1 heme lyase
Orig transcript idgnl|cribi|Naga_100734g3.9484.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:106941..107033 +
CM002470.1supercontigCM002470.1:107166..108044 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004408holocytochrome-c synthase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR000511Cyt_C/C1_haem_lyase
Homology
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|585104903|gb|EWM23732.1| (cytochrome c1 heme lyase [Nannochloropsis gaditana])

HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MAAEPSQARGTEPSEACLVKNSSNRSDPVRHPPTGTNGFFSALRGWFHPSNPSDSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEWFGKEGGKDRMLPAWTATFTAMVGGREGVGEGGKEGERGGVVPGAGGASK 323
            MAAEPSQARGTEPSEACLVKNSSNRSDPVRHPPTGTNGFFSALRGWFHPSNPSDSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEWFGKEGGKDRMLPAWTATFTAMVGGREGVGEGGKEGERGGVVPGAGGASK
Sbjct:    1 MAAEPSQARGTEPSEACLVKNSSNRSDPVRHPPTGTNGFFSALRGWFHPSNPSDSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEWFGKEGGKDRMLPAWTATFTAMVGGREGVGEGGKEGERGGVVPGAGGASK 323          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|1173943526|gb|OQR92367.1| (cytochrome c1 heme lyase [Achlya hypogyna])

HSP 1 Score: 189.119 bits (479), Expect = 4.074e-55
Identity = 104/219 (47.49%), Postives = 140/219 (63.93%), Query Frame = 0
Query:   62 SSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGS-----TPPKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEW 274
            + GCPV    +  S + +N LN      Q   P Q+ PLST+R  S+IP   + P HQ K   + W YPSEQQYFNAMK KG+DP  +D+ +I++IHN +NE+GW +V+E E  L +       PKL RFMGRP+DL+PKA  L + G  N PFDRHDW+V+R +G E+RYVIDFY+GQ      KP+S+++DVRPALD+       VG  VD  + ++
Sbjct:   17 AGGCPVDHSQAGTSMAGLNALNFMEPADQRVAPGQSAPLSTTRVASTIPMGSYVPAHQ-KEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHADAYVNAEPKLVRFMGRPKDLTPKARLLNVFGMANLPFDRHDWIVDR-NGEEIRYVIDFYSGQPTPG--KPISVYMDVRPALDN-------VGNAVDRLRMQF 224          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|669147386|ref|XP_008609255.1| (hypothetical protein SDRG_05320 [Saprolegnia diclina VS20] >gi|530738851|gb|EQC37093.1| hypothetical protein SDRG_05320 [Saprolegnia diclina VS20])

HSP 1 Score: 186.037 bits (471), Expect = 1.214e-53
Identity = 104/220 (47.27%), Postives = 137/220 (62.27%), Query Frame = 0
Query:   62 SSGCPV-QGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP-----PKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEW 274
            + GCPV   +   PS + +N LN      Q     Q+VPLST R  S+IP   + P HQ K   D W YPSEQQYFNAMK KG+DP  +D+ +I++IHN +NE+GW +V+E E  L         PKL RFMGRP+D +PKA  L + G  N PFDRHDW+++R +G EVRYVIDFYTG       KP+S+++DVRPALD+       +G  VD  + ++
Sbjct:   29 TGGCPVDHSKMGGPSMAGLNTLNFMEPADQSVAKGQSVPLSTQRVASTIPMGSYVPAHQ-KEGQDTWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVETEKTLHGDAYTHGDPKLVRFMGRPKDFTPKARLLNLFGMANLPFDRHDWIIDR-NGEEVRYVIDFYTGHPTPG--KPISVYMDVRPALDN-------IGNAVDRLRMQF 237          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|1084350077|dbj|BAV82448.1| (cytochrome c heme-lyase [Roombia sp. NY0200])

HSP 1 Score: 186.422 bits (472), Expect = 1.559e-53
Identity = 119/297 (40.07%), Postives = 162/297 (54.55%), Query Frame = 0
Query:    7 QARGTEPSEACLVK---NSSNRSDPVRHPPTGTNGFFSALRGWFHPSNPSDSTELESNSSGCPVQ-------GRASPPSSSPV----NPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWE-----GGLGST-----------PPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQT--DVKDPKPVSMHLDVRPALDSMAAVRMRVGR-TVDEW 270
             A  T  +E C VK   +S  R  PV H    ++G          P+N    T+++  +  CPV+        +  PPS+ P+    NP NN    +Q P P Q  PL   R +SSIP      +        KWVYPSEQ +FNAMK KG+ P  +D+ +++AIHN  NE+ W ++L WE     G  G+            PPKL RF GRP DLSPKA +L M GY++PFDRHDW+VER +  +VRYVIDFY G T       +P++MHLDVRPA+DS++   +R+ +  +D W
Sbjct:   13 HALRTPAAEQCPVKPKVDSEPRECPVDHRSNASDG----------PNN----TKIQG-TEACPVKQTSKEETTQTVPPSACPMHAHFNPNNNMSAPNQQPAPDQRFPLPRERVVSSIPNGSVADEEA------KWVYPSEQMFFNAMKKKGWSPSEKDMPLVVAIHNTTNEKAWNEILRWEQFALTGSKGAPTDAASSTPPVPPPKLVRFQGRPNDLSPKAWFLSMIGYSRPFDRHDWLVERTNKEQVRYVIDFYEGGTVPSTSRRQPIAMHLDVRPAVDSLSLAVVRLHKFFLDLW 288          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|813127831|ref|XP_012197473.1| (hypothetical protein SPRG_03495 [Saprolegnia parasitica CBS 223.65] >gi|641537722|gb|KDO31566.1| hypothetical protein SPRG_03495 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 184.882 bits (468), Expect = 2.647e-53
Identity = 103/220 (46.82%), Postives = 137/220 (62.27%), Query Frame = 0
Query:   62 SSGCPV-QGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP-----PKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEW 274
            + GCPV   +   PS + +N LN      Q     Q+VPLST R  S+IP   + P HQ K   + W YPSEQQYFNAMK KG+DP  +D+ +I++IHN +NE+GW +V+E E  L         PKL RFMGRP+D +PKA  L + G  N PFDRHDW+++R +G EVRYVIDFYTG       KP+S+++DVRPALD+       +G  VD  + ++
Sbjct:   29 TGGCPVDHSKMGGPSMAGLNTLNFMEPADQSVAKGQSVPLSTQRVASTIPMGSYVPAHQ-KEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHGDAYTRGDPKLVRFMGRPKDFTPKARLLNLFGMANLPFDRHDWIIDR-NGEEVRYVIDFYTGHP--TPGKPISVYMDVRPALDN-------IGNAVDRLRMQF 237          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|673043191|ref|XP_008875556.1| (hypothetical protein H310_10855 [Aphanomyces invadans] >gi|574468788|gb|ETV95805.1| hypothetical protein H310_10855 [Aphanomyces invadans])

HSP 1 Score: 183.726 bits (465), Expect = 4.514e-53
Identity = 105/221 (47.51%), Postives = 138/221 (62.44%), Query Frame = 0
Query:   60 SNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLG-------STP-PKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALD----SMAAVRMRVGRTV 267
            + S GCPV       + S +N LN            Q VPLST R  SSIP   F P+HQ +     W YPSEQQYFNAMK KG+DP  +D+ +I++IHN +NE+GW  V+E+E  L        + P PKL RFMGRP+D SPKA ++   G  N PFDRHDW+V+R +G+EVRYVIDFYTG       KP+S+++DVRPALD    ++  +RM+  +T+
Sbjct:   12 AKSGGCPVDHLNPDAAKSGLNSLNFMEPADHTVDAKQKVPLSTHRVASSIPMGSFVPQHQTE-GQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWADVVEFERTLHPEAYNSETCPEPKLVRFMGRPKDFSPKARFMNTIGVANLPFDRHDWIVDR-NGTEVRYVIDFYTGHP--VPGKPLSVYMDVRPALDNFENAVDRLRMQFHKTI 228          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|470249343|ref|XP_004366903.1| (cytochrome c heme-lyase [Dictyostelium fasciculatum] >gi|328871550|gb|EGG19920.1| cytochrome c heme-lyase [Dictyostelium fasciculatum])

HSP 1 Score: 179.104 bits (453), Expect = 8.113e-52
Identity = 91/218 (41.74%), Postives = 128/218 (58.72%), Query Frame = 0
Query:   53 SDSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGS--TPPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVD 268
             + T   + + GCPV    +  +   +NP NN  + +Q P   Q +PL TSR  SSIP+++           D+W YPS Q +FNAMK K + P  +D+ +++AIHN VNE+ W  VL+WE    S    PKL +F GR +D SPKA  L   GY  PFDRHDW+++R  G +VRYVIDFY G+ D ++ KP+ ++LDVRPA+D       R  +  +
Sbjct:    2 DEETRKNALAGGCPVAHEPTTATPKDINPNNNMYRPNQKPHVDQTLPLDTSRVKSSIPRTE----------QDQWEYPSPQMFFNAMKRKQYQPSEKDMDMVVAIHNTVNEKCWEHVLDWEKEYSSECDKPKLVKFRGRAKDFSPKARILNFFGYTLPFDRHDWIIDRC-GKQVRYVIDFYEGKADKENNKPIGIYLDVRPAIDDFQTFTDRFKKLFN 208          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|760438243|ref|XP_011396190.1| (putative cytochrome c-type heme lyase [Auxenochlorella protothecoides] >gi|675350880|gb|KFM23320.1| putative cytochrome c-type heme lyase [Auxenochlorella protothecoides])

HSP 1 Score: 177.563 bits (449), Expect = 2.089e-51
Identity = 98/184 (53.26%), Postives = 115/184 (62.50%), Query Frame = 0
Query:   89 SQVPQPSQAVPLSTSREISSIPKSDFTP--KHQPKWA--GDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAA----VRMRVG 264
            S  PQP Q+ PLST R+ SSIP     P  +HQP        W YPSEQ ++NAM+ KG+ P  +D+  ++AIHNAVNE+ WR+V  WE   G   P L RF GRP D+SPKA  L   GY  PFDRHDWVVER  G EVRYVIDFY G        P +MHLDVRPALDS  A    +RM+ G
Sbjct:    5 SNSPQPGQSKPLSTWRQASSIPAGGEAPLPEHQPAHGVRSGVWTYPSEQMFYNAMRRKGWTPSEEDMTAVVAIHNAVNERAWREVRAWEAAAGCPAPTLLRFRGRPADVSPKARLLNALGYRLPFDRHDWVVERGGGREVRYVIDFYNGAPSPD--MPTAMHLDVRPALDSPLALWERLRMQAG 186          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|831764211|ref|XP_012751110.1| (hypothetical protein SAMD00019534_092420 [Acytostelium subglobosum LB1] >gi|735851742|dbj|GAM26067.1| hypothetical protein SAMD00019534_092420 [Acytostelium subglobosum LB1])

HSP 1 Score: 178.333 bits (451), Expect = 2.097e-51
Identity = 92/204 (45.10%), Postives = 124/204 (60.78%), Query Frame = 0
Query:   62 SSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGST--PPKLKRFMGRPQDLSPKAAWLWMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRV 263
            + GCPV        +  +NP NN  + +Q P P Q +PL T R  SSIP+++           D W YPS+Q +FNAMK K + P  QD+ +++AIHN VNE+ W  VLEWE         PKL +F GR QD SPKA  L   GY  PFDRHDW V+R +G +VRY+IDFY G+ D +  K V ++LDVRPA+D + +++ R+
Sbjct:   25 AGGCPV--------AHDINPTNNMYRPNQKPHPEQKLPLGTDRIKSSIPRTE----------KDNWEYPSQQMFFNAMKRKNYQPDEQDMQVVIAIHNTVNEKCWDHVLEWEKEFKDECPNPKLIKFRGRAQDFSPKARLLNFVGYKLPFDRHDWTVDR-NGKQVRYIIDFYEGKLDKETNKSVGIYLDVRPAIDDVQSLKSRL 209          
BLAST of EWM23732.1 vs. NCBI_GenBank
Match: gi|698804916|ref|XP_009835487.1| (hypothetical protein H257_10588 [Aphanomyces astaci] >gi|574109480|gb|ETV74983.1| hypothetical protein H257_10588 [Aphanomyces astaci])

HSP 1 Score: 179.104 bits (453), Expect = 2.452e-51
Identity = 105/218 (48.17%), Postives = 137/218 (62.84%), Query Frame = 0
Query:   64 GCPVQGRA-SPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGL-----GSTP---PKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMA----AVRMRVGRTV 267
            GCPV        + S +N LN          P Q VPLST R  S+IP   F P+HQ +     W YPSEQQYFNAMK KG+DP  +D+ +I++IHN +NE+GW  V+ +E  L     GS     PKL RFMGRP+D SPKA +L   G  N PFDRHDW+V+R +G+EVRYVIDFY+GQ      KP+S+++DVRPALD++      VRM+  +++
Sbjct:   16 GCPVDHSGPDAAAKSGLNALNFMEPADHTVDPKQKVPLSTHRVQSTIPMGSFVPQHQTE-GQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERTLHPDAYGSDKCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDR-NGTEVRYVIDFYSGQP--VPGKPLSVYMDVRPALDTVQNAVDRVRMQFHKSI 229          
The following BLAST results are available for this feature:
BLAST of EWM23732.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104903|gb|EWM23732.1|0.000e+0100.00cytochrome c1 heme lyase [Nannochloropsis gaditana... [more]
gi|1173943526|gb|OQR92367.1|4.074e-5547.49cytochrome c1 heme lyase [Achlya hypogyna][more]
gi|669147386|ref|XP_008609255.1|1.214e-5347.27hypothetical protein SDRG_05320 [Saprolegnia dicli... [more]
gi|1084350077|dbj|BAV82448.1|1.559e-5340.07cytochrome c heme-lyase [Roombia sp. NY0200][more]
gi|813127831|ref|XP_012197473.1|2.647e-5346.82hypothetical protein SPRG_03495 [Saprolegnia paras... [more]
gi|673043191|ref|XP_008875556.1|4.514e-5347.51hypothetical protein H310_10855 [Aphanomyces invad... [more]
gi|470249343|ref|XP_004366903.1|8.113e-5241.74cytochrome c heme-lyase [Dictyostelium fasciculatu... [more]
gi|760438243|ref|XP_011396190.1|2.089e-5153.26putative cytochrome c-type heme lyase [Auxenochlor... [more]
gi|831764211|ref|XP_012751110.1|2.097e-5145.10hypothetical protein SAMD00019534_092420 [Acytoste... [more]
gi|698804916|ref|XP_009835487.1|2.452e-5148.17hypothetical protein H257_10588 [Aphanomyces astac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6959rna6959Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications