rna6956, rna6956 (mRNA) Nannochloropsis gaditana

Overview
Namerna6956
Unique Namerna6956
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2571
Alignment locationCM002470.1:101757..102789 +

Link to JBrowse

Properties
Property NameValue
Productfungal specific transcription factor domain-containing protein
Orig transcript idgnl|cribi|Naga_100891g1.2182.mrna
Orig protein idgnl|cribi|Naga_100891g1.2182
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:101757..102789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100891g1gene6722Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6956rna6956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23734.1cds6940Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6956 ID=rna6956|Name=rna6956|organism=Nannochloropsis gaditana|type=mRNA|length=2571bp
CCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCC
CTCCCTCCCCCAAGGCCGTTGCCCCGACCGCCTCCGCTCCCGTTTCCTCC
TCGGCTCCCTCGGGATCCTTGTGGTCCTCGCCTCGCTCGCAGTCTCCTTA
GGTTCTTGGGCCTTCGCCGGCCTCCACACGACCTTGATCGTGTGGGAAGT
AGTGCCCTTCCTCCTTCTCGCCATTGGGGTCGACAACATGTTTATTATCA
CCCGGGAATTTGACCGACTCCAAGGGCTCTTCCCGCCCTCCCTCCCGCCC
TCCCTCCCGCCTGCCCTCCCGCCCTCCCTCCTGCCCTCCCTCTCACCCTC
CCTCGACGTCTTGCTCGGCCTCACCTTGTCCGAGGTCGGGCCCTCCATGC
TGGCAGCCGCCACGGCGGAAACCGTCGCCTTTTTAGTGGGGGCATTGACG
GGGATCCCAGCCTTGCAACAATTTTGTCTGGTTGCGGCTTTGGCTGTGAC
TGTGGATTTTGTGTTCCAATGCACCTGGTTTGTGGCCGGACTGGCCTTGG
ATACCCGGAGACAGAGGGCTCGACGCATGGACGGCTGTGTCTGCTGGACC
GTGGGCGGGGGGGAGGGCGGGGGAGAGGGCGGGCGCAGGTGGGGCGTGGG
CCTGTCTTCCTCCGGGTATCATCCTCTGGGGAATGGAGGGGACCAGGACG
AAGAAGCTGCCGAAGGAGGGAAAGGCGTGGATGAAAAATTCTGGAAACCA
CCGGCAGCCCCCCCCCACGTGCCACACCCTCCCTCGGCCTTTTGGAACCG
GTGCATGGACAAGGGCTACCTTCCGTGCCTCATGTCTCGAGCGGGAAAAA
CCGCCGTCGGGGGTTTGGGTCTTCTTCTCTTGATTCTAGGCCTGTGGGGA
ATCACCACCTTGGAATTGGGCTTGGAGCCGCAGTTGGCGGCGCCATCGGA
CTTTTATTTGGTCGATTATTACAACACCGAATTCACGCTAGGGGAGGCTG
GCCCCCCTTTGTACCTGGTGTTGAAAGACTTGGACTATGCAGACGTAGCC
GTCCGCAACGCGCTCCGGAATTTGAGTCGGCAACTCTCACGCTTGGAATC
CTACGTACAAAGCCCTGTGTATTCTTGGCTTGATGCGTTGGAGGCGTATA
TGGACAACGAGAACCTCCCGCCAGATTGCCCCGTGCCCGATCCGAGCCAA
GGCTTTTATGCGAACGCCAAGACTTTCTTGAGCATCCCCATTGAGACCCC
GTGTTGTCAAACGGCGGGCATTTGTGGGGAACAGTACCAGACAGACGTGG
TTTTTGGGCCGAAAAACACCGGGGGGTCTAGCCGGGAGGAAGGCCAGCGC
AAGGGGAGGGTTTCAAAGCCCGACGCGTCGAAGTCAGGGGGAGAGGAGGA
GGAAGTGGTGGTGGCCTCCCGTTTCCGACTCCAATTGCAGCCGTTGCGGA
AGGAGCGGGACTTTATCGACAGTTACTACTATCTGCGTACGTACGTGAGA
GAGTTTGCCGCCGCGGTGCCGGAACGTTACTCGGGCCAGGGGAGGGAGGG
AGGGACCAGCGCGGTCGTCTTTCCCTACTCCCTGTATTTTGTCTATTACG
AGCAGTACACCTACATCCAAGGCGTGGCGTTGACCAATGTGTGCCTGGCG
CTCTTGGCGGTGGGGATTTGTACGGCCCTCTTGACTGGCAGCGTCGCCAT
CGCCGGGGTGGTGGTTGGGATGGTGCTGTGGATCATGCTGGGAATGGTGG
GAGTTCTGGCCGTCTGGAACCGACTTACTTCCGGGTATCTGGTGCGGATC
AACGCGATCTCGGTCGTCAATCTGGTGATGGCTACGGGGCTGGCCGTTGA
ATTTGTGGTCCATATCGCCGGGGCCTACCTGACGTACCCCGTGGGAGAAG
GGGAGGAAAAGCGCCGGAATGCAGCCGGCAATTTTCGGGCGCTGTCTCCC
CGTGAAAAGCGGGCGTGGCATGCCTTGTCTTCCATGGGCGCCTCCGTGTT
GTGCGGCATCACGCTGACCAAGTTCGTGGGGATCGCTGTGCTGGCCGTCG
CACCTTCCCACCTGTTTCGGGTGTATTATTTTAGGATGTACGTGTCTTTG
ATCGGCGTCGGTGCCTTCGTGGGGTTGGCGCTCTTACCCGTGATCTTAGC
CGCTTATGGCCCTTTGCCCGCAAGAAAAGAGGGTAGAGACGGAGGTGTGT
ATAGCAATAGAACAGAAAGGCAAGAAAGCAGGGGGGCTGGCAGGCGGAAG
AGACGGAGGAAGAGGAAAGATGCACTTGACGGCGTCACAGAGAAGGAAGA
TTAAAGCATGTAGACTGGGATTGGAAAGAAAGCACGACCCTCACACACAT
TTCCTTGTCTCTGAAGTATAATTTTTAATTATTCGGCGCGAAAAAAGAAC
GATTCGTGCGACATACTATATTTCACGAGCCCTGATAGGGTATTACTGCA
TCCATACAAGGCGGCCTGGGGAATAAAGTGTATGCATGGCGCAAATTCCC
CGATAATAGGCAGGATGACCCGAGACGGCATTCGGAGATATCACAAGATA
CTATTCTCTACTCTTCTTTTC
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protein sequence of rna6956

>rna6956-protein ID=rna6956-protein|Name=rna6956|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MASQPRSSYGEGDLCLNPTVPAHNPGADSNSSHANGPTSAVARARRRGGK
NLSLPEPPQPQGFTCFACRVAKVRCDKSTPCNRCSQLALECISQGKGPGR
PSKASTPRARKAGTNQPRPPRLGALPEKHRDPRLHALAGQARGPPPPSAA
FPIHHRPSWPLHEPGPTPYLPSGPTSSGESHHLYRRQDHGVEEGKEG
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mRNA from alignment at CM002470.1:101757..102789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6956 ID=rna6956|Name=rna6956|organism=Nannochloropsis gaditana|type=mRNA|length=1033bp|location=Sequence derived from alignment at CM002470.1:101757..102789+ (Nannochloropsis gaditana)
ccccctatTTTTCTAAATAAACCTTGACAACAGTTATGGCGTCACAACCT
CGAAGCTCGTATGGTGAGGGTGACCTGTGCTTGAATCCCACGGTACCCGC
CCACAATCCTGGAGCCGACAGCAATTCCTCTCACGCAAATGGCCCTACCA
GTGCAGTGGCGAGAGCGCGTCGTAGGGGTGGGAAGAATTTAAGCTTGCCA
GAGCCTCCTCAACCTCAAGGATTCACTTGTTTTGCCTGTCGGGTAGCAAA
AGGTATGTTGTACGTTCTCATCTCCGCATCTTTGTcagcggaggaaaaga
cggcATGgtcggtggaggtgggacATGATCGGTATCCGGGATGTGGGACG
GAAGTGGACCTGGGAGAGGTTTTAATgacacggagggggggggcgcaagC
AGTTTGAATGATACGAAAAGGTGTCAACCCGTTCTTGGTGATGTGGGGAG
GTATACACTCAATTTAAATAATACAAGGGAGGGTTGTGATGCGGTATCTG
CTGATAGGGGAGGGTATCATCTTGCCCTGGATGGCACGGGGGGTGTATAT
CAATCGGTTCATTTCGATCCACGGGCGGCGTGGATGAGGACACTCTACGT
CTGGGACCCCTCGacctcaacctccctccctccctccctccctccctccc
tcctcccagtccggTGCGACAAGAGCACCCCCTGCAATCGTTGTTCCCAG
CTCGCGCTGGAGTGCATCTCGCAAGGAAAAGGTCCGGGGCGACCGTCCAA
AGCCTCGACGCCGCGCGCGAGGAAAGCAGGCACGAACCAacctcgtcccc
ctcgtcttgGCGCGTTGCCCGAAAAACACCGAGATCCCCGCCTGCATGCT
CTGGCAGGCCAAGCCCGGGgtcccccgccgccctcagCGGCCTTCCCAAT
CCATCATCGCCCAAGTTGGCCGTTACACGAACCCGGTCCAACCCCGTACC
TTCCTTCTGGGCCGACGTCATCGGGGGAATCGCACCACCTTTATCGCCGA
CAGGATCACGgcgtcgaggaggggaaggagggc
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Coding sequence (CDS) from alignment at CM002470.1:101757..102789+

>rna6956 ID=rna6956|Name=rna6956|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at CM002470.1:101757..102789+ (Nannochloropsis gaditana)
ATGGCGTCACAACCTCGAAGCTCGTATGGTGAGGGTGACCTGTGCTTGAA
TCCCACGGTACCCGCCCACAATCCTGGAGCCGACAGCAATTCCTCTCACG
CAAATGGCCCTACCAGTGCAGTGGCGAGAGCGCGTCGTAGGGGTGGGAAG
AATTTAAGCTTGCCAGAGCCTCCTCAACCTCAAGGATTCACTTGTTTTGC
CTGTCGGGTAGCAAAAGtccggTGCGACAAGAGCACCCCCTGCAATCGTT
GTTCCCAGCTCGCGCTGGAGTGCATCTCGCAAGGAAAAGGTCCGGGGCGA
CCGTCCAAAGCCTCGACGCCGCGCGCGAGGAAAGCAGGCACGAACCAacc
tcgtccccctcgtcttgGCGCGTTGCCCGAAAAACACCGAGATCCCCGCC
TGCATGCTCTGGCAGGCCAAGCCCGGGgtcccccgccgccctcagCGGCC
TTCCCAATCCATCATCGCCCAAGTTGGCCGTTACACGAACCCGGTCCAAC
CCCGTACCTTCCTTCTGGGCCGACGTCATCGGGGGAATCGCACCACCTTT
ATCGCCGACAGGATCACGgcgtcgaggaggggaaggagggcATGGCGTCA
CAACCTCGAAGCTCGTATGGTGAGGGTGACCTGTGCTTGAATCCCACGGT
ACCCGCCCACAATCCTGGAGCCGACAGCAATTCCTCTCACGCAAATGGCC
CTACCAGTGCAGTGGCGAGAGCGCGTCGTAGGGGTGGGAAGAATTTAAGC
TTGCCAGAGCCTCCTCAACCTCAAGGATTCACTTGTTTTGCCTGTCGGGT
AGCAAAAGtccggTGCGACAAGAGCACCCCCTGCAATCGTTGTTCCCAGC
TCGCGCTGGAGTGCATCTCGCAAGGAAAAGGTCCGGGGCGACCGTCCAAA
GCCTCGACGCCGCGCGCGAGGAAAGCAGGCACGAACCAacctcgtccccc
tcgtcttgGCGCGTTGCCCGAAAAACACCGAGATCCCCGCCTGCATGCTC
TGGCAGGCCAAGCCCGGGgtcccccgccgccctcagCGGCCTTCCCAATC
CATCATCGCCCAAGTTGGCCGTTACACGAACCCGGTCCAACCCCGTACCT
TCCTTCTGGGCCGACGTCATCGGGGGAATCGCACCACCTTTATCGCCGAC
AGGATCACGgcgtcgaggaggggaaggagggc
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Synonyms
Publications