EWM23734.1, cds6940 (CDS) Nannochloropsis gaditana

Overview
NameEWM23734.1
Unique Namecds6940
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:101792..102008 +
Alignment locationCM002470.1:102416..102789 +

Link to JBrowse

Properties
Property NameValue
End range.
End range102789
Protein idEWM23734.1
Productfungal specific transcription factor domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100891g1.2182.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:101792..102008 +
CM002470.1supercontigCM002470.1:102416..102789 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of EWM23734.1 vs. NCBI_GenBank
Match: gi|585104907|gb|EWM23734.1| (fungal specific transcription factor domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 393.66 bits (1010), Expect = 1.524e-138
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 
Query:    1 MASQPRSSYGEGDLCLNPTVPAHNPGADSNSSHANGPTSAVARARRRGGKNLSLPEPPQPQGFTCFACRVAKVRCDKSTPCNRCSQLALECISQGKGPGRPSKASTPRARKAGTNQPRPPRLGALPEKHRDPRLHALAGQARGPPPPSAAFPIHHRPSWPLHEPGPTPYLPSGPTSSGESHHLYRRQDHGVEEGKEG 197
            MASQPRSSYGEGDLCLNPTVPAHNPGADSNSSHANGPTSAVARARRRGGKNLSLPEPPQPQGFTCFACRVAKVRCDKSTPCNRCSQLALECISQGKGPGRPSKASTPRARKAGTNQPRPPRLGALPEKHRDPRLHALAGQARGPPPPSAAFPIHHRPSWPLHEPGPTPYLPSGPTSSGESHHLYRRQDHGVEEGKEG
Sbjct:    1 MASQPRSSYGEGDLCLNPTVPAHNPGADSNSSHANGPTSAVARARRRGGKNLSLPEPPQPQGFTCFACRVAKVRCDKSTPCNRCSQLALECISQGKGPGRPSKASTPRARKAGTNQPRPPRLGALPEKHRDPRLHALAGQARGPPPPSAAFPIHHRPSWPLHEPGPTPYLPSGPTSSGESHHLYRRQDHGVEEGKEG 197
The following BLAST results are available for this feature:
BLAST of EWM23734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104907|gb|EWM23734.1|1.524e-138100.00fungal specific transcription factor domain-contai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6956rna6956Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications