rna6946, rna6946 (mRNA) Nannochloropsis gaditana

Overview
Namerna6946
Unique Namerna6946
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length595
Alignment locationCM002470.1:79651..80666 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein L30
Orig transcript idgnl|cribi|Naga_101566g1.7188.mrna
Orig protein idgnl|cribi|Naga_101566g1.7188
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:79651..80666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101566g1gene6712Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6946rna6946-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23743.1cds6930Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6946 ID=rna6946|Name=rna6946|organism=Nannochloropsis gaditana|type=mRNA|length=595bp
CCCTCCTCCCTCAGGGTAACCAGTGGTTCGAAATGGATGACAGCTCCTGC
GAAATGATCGGCTTCCAGAAACGTCACACCAAAGGCTCCCTCTGGCGCAT
CCTTCGAGACATCCACGAAGAAGGGATCGAGGAAGGGAGGGAGGGAGGGG
GGGAGGGCGAGGGGGAGGAAGGGGTGCATCGGGACGTCTGGAGCGAGGTC
GAGGACTCGGAGCGAAGAAGCCGGCGGAGGGAAGGAAGGAGGAAGGGGGA
GAGGGAGGGAGGGAGGTCGTGAAGGAGGGCGAGACTCGAGACAAGGCTGG
GAGCGGTGGGTGACACCCTTGGGGTCCGGATTGTTGGGAAGGAGGAAGGG
GGGGAGGGAGGGAGGGAAGGAGGAAGGGGGGGAGGGCGGGAGGGAGGTCG
TGAAGGAGGGCGAGACTCGAGACACCCCTGGGCCCGGATTGTTGTGTTCC
CGAGAGAGGAAAAGCCTGATTCTAACCCTAATACTGACCTTAAGCGTTCT
CTTTTGCGGGGATTCTGGGCAAACCGTAAACCGTGTTCATGGTGGTTCAA
ATCATTCATTTTTTGGGTTTTTTTGTTTTGTTTCTTGGGGGGGGG
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protein sequence of rna6946

>rna6946-protein ID=rna6946-protein|Name=rna6946|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MITAATGTVSRTIVDLGAHSELAKLLCVSLAVLYGHSRRGFNGCRSLVLA
PLSSSLPSHFPSIFRRAHHSPLSVPILSAGHSIAAMAIPESILKKRRTQE
ALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGREGGWRNRGRK
GARGAMRGRQREQRRGFEGESAWHV
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mRNA from alignment at CM002470.1:79651..80666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6946 ID=rna6946|Name=rna6946|organism=Nannochloropsis gaditana|type=mRNA|length=1016bp|location=Sequence derived from alignment at CM002470.1:79651..80666+ (Nannochloropsis gaditana)
ATGATTACCGCCGCCACGGGTACAGTGTCCCGCACGATAGTTGACCTTGG
CGCGCACAGTGAGCTTGCGAAGCTGCTGTGTGTGTCATTGGCTGTGCTCT
ATGGACATAGCCGGCGGGGCTTTAATGGCTGTAGAAGCCTGGTACTcgcc
cccctttcttcctccctaccatcgcattttccttccatctttAGAAGGGC
TCATCACTCACCCCTTTCTGTTCCTATTCTTTCTGCCGGCCATTCAATAG
CAGCAATGGCCATCCCCGAGTCCATCCTCAAAAAACGTCGCACGCAAGAA
GCGCTTTTGGCCACAAAGCTTGCTGAGAAGGCAGCAGCGAAGAAGGTGGG
TAGAGAGAGGTGTAGATTGAGACATCATGATCGCGGGCGAGGAAAAAGCA
CAAGGGGCAACATGTAATTATACCGCGTGACCAACATCCTGCGAGAGAAG
CTGCTGattgtggggagggagggggatcgGGAGGGGATTTTGACGCAGGA
GAGGAGATGGGTAGTCATCGCTTACAACAACAGATGAAGTCTCGCAAGTA
CGCTTGTGAACTTGGAAGCCATGTGGCATCGTGCGCTCGCGCTGGGCAAG
GGCCTTGAAGAGCTTGGATAGGATGAGTctgtccctgccctccctcttgc
acgcgcctgacccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctccctccctcccatccctatCTGCGTACCCGACA
CCACAGGCCGCCAGGGCGAAGCGTGGAGAGACAGTTAAGCGGGCAGAAAA
ATACATGAAGGAGTACAAGAAGgtaggcagggagggagggtggaggaata
gagggaggaaaggagcaagGGGTGCAATGCGCGGAAGACAGCGCGAACAG
AGGAGAGGGttcgagggagaaagcgcgTGGCATGTGTGACCATGCAATCA
TGGACCTGAAAAGCATTGAGCAACATGCGACCTGCGTCGGACATCGAATA
ACGACcccatcttccc
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Coding sequence (CDS) from alignment at CM002470.1:79651..80666+

>rna6946 ID=rna6946|Name=rna6946|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002470.1:79651..80666+ (Nannochloropsis gaditana)
ATGATTACCGCCGCCACGGGTACAGTGTCCCGCACGATAGTTGACCTTGG
CGCGCACAGTGAGCTTGCGAAGCTGCTGTGTGTGTCATTGGCTGTGCTCT
ATGGACATAGCCGGCGGGGCTTTAATGGCTGTAGAAGCCTGGTACTcgcc
cccctttcttcctccctaccatcgcattttccttccatctttAGAAGGGC
TCATCACTCACCCCTTTCTGTTCCTATTCTTTCTGCCGGCCATTCAATAG
CAGCAATGGCCATCCCCGAGTCCATCCTCAAAAAACGTCGCACGCAAGAA
GCGCTTTTGGCCACAAAGCTTGCTGAGAAGGCAGCAGCGAAGAAGGCCGC
CAGGGCGAAGCGTGGAGAGACAGTTAAGCGGGCAGAAAAATACATGAAGG
AGTACAAGAAGgtaggcagggagggagggtggaggaatagagggaggaaa
ggagcaagGGGTGCAATGCGCGGAAGACAGCGCGAACAGAGGAGAGGGtt
cgagggagaaagcgcgTGGCATGTGTGAATGATTACCGCCGCCACGGGTA
CAGTGTCCCGCACGATAGTTGACCTTGGCGCGCACAGTGAGCTTGCGAAG
CTGCTGTGTGTGTCATTGGCTGTGCTCTATGGACATAGCCGGCGGGGCTT
TAATGGCTGTAGAAGCCTGGTACTcgcccccctttcttcctccctaccat
cgcattttccttccatctttAGAAGGGCTCATCACTCACCCCTTTCTGTT
CCTATTCTTTCTGCCGGCCATTCAATAGCAGCAATGGCCATCCCCGAGTC
CATCCTCAAAAAACGTCGCACGCAAGAAGCGCTTTTGGCCACAAAGCTTG
CTGAGAAGGCAGCAGCGAAGAAGGCCGCCAGGGCGAAGCGTGGAGAGACA
GTTAAGCGGGCAGAAAAATACATGAAGGAGTACAAGAAGgtaggcaggga
gggagggtggaggaatagagggaggaaaggagcaagGGGTGCAATGCGCG
GAAGACAGCGCGAACAGAGGAGAGGGttcgagggagaaagcgcgTGGCAT
GTGTGA
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Synonyms
Publications