EWM23743.1, cds6930 (CDS) Nannochloropsis gaditana

Overview
NameEWM23743.1
Unique Namecds6930
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:79651..79995 +
Alignment locationCM002470.1:80407..80589 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23743.1
ProductRibosomal protein L30
Orig transcript idgnl|cribi|Naga_101566g1.7188.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:79651..79995 +
CM002470.1supercontigCM002470.1:80407..80589 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012988Ribosomal_L30_N
Homology
BLAST of EWM23743.1 vs. NCBI_GenBank
Match: gi|585104929|gb|EWM23743.1| (Ribosomal protein L30 [Nannochloropsis gaditana])

HSP 1 Score: 350.517 bits (898), Expect = 3.378e-122
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MITAATGTVSRTIVDLGAHSELAKLLCVSLAVLYGHSRRGFNGCRSLVLAPLSSSLPSHFPSIFRRAHHSPLSVPILSAGHSIAAMAIPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGREGGWRNRGRKGARGAMRGRQREQRRGFEGESAWHV 175
            MITAATGTVSRTIVDLGAHSELAKLLCVSLAVLYGHSRRGFNGCRSLVLAPLSSSLPSHFPSIFRRAHHSPLSVPILSAGHSIAAMAIPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGREGGWRNRGRKGARGAMRGRQREQRRGFEGESAWHV
Sbjct:    1 MITAATGTVSRTIVDLGAHSELAKLLCVSLAVLYGHSRRGFNGCRSLVLAPLSSSLPSHFPSIFRRAHHSPLSVPILSAGHSIAAMAIPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGREGGWRNRGRKGARGAMRGRQREQRRGFEGESAWHV 175          
BLAST of EWM23743.1 vs. NCBI_GenBank
Match: gi|68160371|gb|AAY86760.1| (60S ribosomal protein L7 [Chaetomium globosum])

HSP 1 Score: 58.151 bits (139), Expect = 4.561e-7
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   70 SPLSVPILSAGHSIAAMAIPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGRE 141
            +P SVP  +       + +PE++LKKR++QE   A + AE+   KKA + KRG   KRAEKY+KEY+   RE
Sbjct:    2 APTSVPTQND------VLVPETLLKKRKSQEKARAERTAEQDKQKKANKEKRGVIFKRAEKYVKEYRDTERE 67          
BLAST of EWM23743.1 vs. NCBI_GenBank
Match: gi|116191627|ref|XP_001221626.1| (60S ribosomal protein L7 [Chaetomium globosum CBS 148.51] >gi|88181444|gb|EAQ88912.1| 60S ribosomal protein L7 [Chaetomium globosum CBS 148.51])

HSP 1 Score: 57.7658 bits (138), Expect = 6.918e-7
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   70 SPLSVPILSAGHSIAAMAIPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMKEYKKVGRE 141
            +P SVP  +       + +PE++LKKR++QE   A + AE+   KKA + KRG   KRAEKY+KEY+   RE
Sbjct:    2 APTSVPTQND------VLVPETLLKKRKSQEKARAERTAEQDKQKKANKEKRGVIFKRAEKYVKEYRDAERE 67          
The following BLAST results are available for this feature:
BLAST of EWM23743.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104929|gb|EWM23743.1|3.378e-122100.00Ribosomal protein L30 [Nannochloropsis gaditana][more]
gi|68160371|gb|AAY86760.1|4.561e-744.4460S ribosomal protein L7 [Chaetomium globosum][more]
gi|116191627|ref|XP_001221626.1|6.918e-744.4460S ribosomal protein L7 [Chaetomium globosum CBS ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6946rna6946Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications