rna6945, rna6945 (mRNA) Nannochloropsis gaditana

Overview
Namerna6945
Unique Namerna6945
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length366
Alignment locationCM002470.1:77056..77650 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102447g1.2345.mrna
Orig protein idgnl|cribi|Naga_102447g1.2345
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:77056..77650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102447g1gene6711Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23744.1cds6929Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6945rna6945-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6945 ID=rna6945|Name=rna6945|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
ATGTGCCGAGACTTATGCATCGGTCTCACCGCACGGGGCCGTCGTTCCTG
GACAGTACATACGTACATATATCTATTTGGTCATTTAATATCTATTTGGT
TATTTAGTATCTATAACGACTGGCAATGGGACCCTTTTTTGACCCCCCAC
CACCCTCTCTCTTCCCGGCGTGAAGTAAATGATGGCAGTAGCATCCACGG
CACGGACTTTCTCCTTCACAATCCGATGATATATCCCGCGTCGCGTCGCG
CCCTCCCCTCGGGATGGGCCCATGAAGGCTTCGTCAATATCAACGTCGGA
CGCCACAAATTTCCCAAAAAAAGTCGTGCATTTGCACTGAGGAGCCACGT
CCCGTGCGGTGGATGA
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protein sequence of rna6945

>rna6945-protein ID=rna6945-protein|Name=rna6945|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MDDSSCEMIGFQKRHTKGSLWRILRDIHEEGIEEGREGGGEGEGEEGVHR
DVWSEVEDSERRSRRREGRRKGEREGGRS
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mRNA from alignment at CM002470.1:77056..77650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6945 ID=rna6945|Name=rna6945|organism=Nannochloropsis gaditana|type=mRNA|length=595bp|location=Sequence derived from alignment at CM002470.1:77056..77650- (Nannochloropsis gaditana)
CCCTCCTCCCTCAGGGTAACCAGTGGTTCGAAATGGATGACAGCTCCTGC
GAAATGATCGGCTTCCAGAAACGTCACACCAAAGGCTCCCTCTGGCGCAT
CCTTCGAGACATCCACGAAGAAGGGATCGAGGAAGGGAGGGAGGGAGGGG
GGGAGGGCGAGGGGGAGGAAGGGGTGCATCGGGACGTCTGGAGCGAGGTC
GAGGACTCGGAGCGAAGAAGCCGGCGGAGGGAAGGAAGGAGGAAGGGGGA
GAGGGAGGGAGGGAGGTCGTGAAGGAGGGCGAGACTCGAGACAAGGCTGG
GAGCGGTGGGTGACACCCTTGGGGTCCGGATTGTTGGGAAGGAGGAAGGG
GGGGAGGGAGGGAGGGAAGGAGGAAGGGGGGGAGGGCGGGAGGGAGGTCG
TGAAGGAGGGCGAGACTCGAGACACCCCTGGGCCCGGATTGTTGTGTTCC
CGAGAGAGGAAAAGCCTGATTCTAACCCTAATACTGACCTTAAGCGTTCT
CTTTTGCGGGGATTCTGGGCAAACCGTAAACCGTGTTCATGGTGGTTCAA
ATCATTCATTTTTTGGGTTTTTTTGTTTTGTTTCTTGGGGGGGGG
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Coding sequence (CDS) from alignment at CM002470.1:77056..77650-

>rna6945 ID=rna6945|Name=rna6945|organism=Nannochloropsis gaditana|type=CDS|length=240bp|location=Sequence derived from alignment at CM002470.1:77056..77650- (Nannochloropsis gaditana)
ATGGATGACAGCTCCTGCGAAATGATCGGCTTCCAGAAACGTCACACCAA
AGGCTCCCTCTGGCGCATCCTTCGAGACATCCACGAAGAAGGGATCGAGG
AAGGGAGGGAGGGAGGGGGGGAGGGCGAGGGGGAGGAAGGGGTGCATCGG
GACGTCTGGAGCGAGGTCGAGGACTCGGAGCGAAGAAGCCGGCGGAGGGA
AGGAAGGAGGAAGGGGGAGAGGGAGGGAGGGAGGTCGTGA
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Synonyms
Publications