rna6942, rna6942 (mRNA) Nannochloropsis gaditana

Overview
Namerna6942
Unique Namerna6942
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1755
Alignment locationCM002470.1:70907..72020 +

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Properties
Property NameValue
Productstress-induced protein
Orig transcript idgnl|cribi|Naga_101744g1.2180.mrna
Orig protein idgnl|cribi|Naga_101744g1.2180
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:70907..72020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101744g1gene6708Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6942rna6942-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23747.1cds6926Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6942 ID=rna6942|Name=rna6942|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp
GATCCCTCGTTCACGAGGTTCTCTTTTTTGTTCATTGATTTACCGCCCTG
TGTGTCATTGCTTGCTCTAGTCTTTTTGTCATTTTTCTTACGCAGGTCGA
CACATTTGCATGCGTAATGTAGAGCCATGCAGAGGTATGAAACGACGGGA
CTGACAGGGTGGACCCTCCTCGGTATTCTTCGTCCTCTTCCTCAGCTCCC
TCCATTGCCCTGTCTTTGTTCGCTTTCCTTTCCTTTTTTTTCTTGATGAG
ATGAAGCCCTCCTCCCTCTCCCTTACCTGCACCGTCAAACATGCACAGAG
ACACACACAGATACATATACCACGTCCTCCATGTTCTCCACCACACTAAT
ACATATACCACGTCCTACATGTTCTCCACCTCTCTTCTGTCCCCTCTCTG
GTTTTGTAATTCTCCCTGTCCCTCTCCGCATTCTCATTCTCCTCCTCCTC
CTTTAACCCTCCTCCTTCTCCTCTTCCTCAGCTGCTCCTATGATCATCAC
CATTATGACGTCGGCGCCTACTTACTCCCTTCACCTAGTCTTGCTCTTTT
CCCCTCCCCCCTTCTATTTCCCCCCCCCCACGCTCTTCCCAAAAGCCATT
TTGCACGCGGTGGCTCTCACTTCCTTTCGCTACTCTTTCTCTTCTTCCTC
CCTTTCCTTTTCTCCTCTTCCTCTTCCTTCGTTTCGTCCCCCTTCTGTCC
TTCCTTTGCTTCGTCCCCCTCGTCCTCCTCTGTTTCCTCCTCGTCTTCCT
CCTCGTCCTCGTCCTCCTCTTTTTGCAGCCGATTTGTTTCCTAACTCCAT
ACATATGCGAGCAACACAATCGCCAGGGACGTGGACCATAGGTCTGGATT
TTGTGCTGGTACCTGACCGATATCATCCCTCTATCGCGAGCATGCTGCCT
GTATTAGTAGTGAGAAAATTGACAAAGCTGAGGCACCCCTTTCTCGAACG
GGAAATTATCTACGGAATACAAATGCCTACAAAATTGAAAACCCGGGCAA
TCATCTGTCGCTGCACAGGACTGCAACTTGAACTATCATTCTTCCGCACA
CACTACCAGGAGGCATGATTTCCACAACAGCCTTCTTCTTTATTTTGAGA
ATCGTATTTTGGCGCGCCATGAAAAAAAAGGGAAAAAGATGCGGTGCAAA
GTTTAATCCATCCTTCTCTTTGGTCTGCCCAAGCCATAGGGCTAACCTCA
TTTTTTTTTCATTTTATGTCTCCGTACCCCAGGGAACACTCGCCTCAAGT
CAAATGCCACAATTTTGTACATGACCTCAATCCGAACCCTCTTGAATATC
AAATTCTTGAGAACACTCGAACCCCACGTCAAGTGTCAAACACAGCACAA
TAGCCTGACTATCCACCTGACAAACATCGAGGTCTCTTACTCCTGCCAAG
CTGACGACAAGTACCCGTCCCTTTTCCCCAATACTTTCAATATCTTACAA
CCCCAAGACAATCGAAACCCAAAGGAATGATCCCATGATTGTCGCCCATC
GAAACACCCAACCTTATTTTCCAAAGTTATGTCCTCAAGAAGACTTTGTC
AACCGTCAAAAAAGCCCTTCTCTTCCTGGTGCACGCGTTAGCAAGACTAA
TTTGACTTTCATTTCGTCACAAGCTGAAGAGAAATGCCCCGTCGCTTCGC
TTGCTTTCACTGCCTCAAATGGCGTGATATTTGAGCTTACACAGTCTTGC
CCTTCTTCATTCTCGAATCTTTGCGAATGATGGAAACCTGTGACAAAAGA
CATGG
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protein sequence of rna6942

>rna6942-protein ID=rna6942-protein|Name=rna6942|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MSAPTCTGETPSASSHQSVEKEEKADKDKTTEGSNEEDEEYRVLAERYKD
EGNAAFKEGRYKEALALYTQGVAIDPDNHVLYSNRSAAFLKESERGKALK
DAERLMEIKPDWPKSYSRKGAAQHALTRYAIT
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mRNA from alignment at CM002470.1:70907..72020+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6942 ID=rna6942|Name=rna6942|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp|location=Sequence derived from alignment at CM002470.1:70907..72020+ (Nannochloropsis gaditana)
CCGTTGATCGAGCATTAAAAGCCTTCACATCCACTTTATCTGGTGATTTG
CATTCTAATTTATGCCCAAATGTCCATGCATTTCTTCGCACATCTGAACT
CCTGCTATCAGGGTCGCAGATACTTGAAGGCCCGTCTACGCCGTCGGCCC
AAGAGATGAGCGCACCTACATGCACGGGGGAAACGCCCTCTGCTTCATCT
CACCAAAGTgtagaaaaggaagagaaagcagacAAAGACAAAACAACGGA
GGGATCCaatgaagaggacgaagaatACCGTGTCTTGGCTGAGCGGTACA
AAGATGAAGGGAACGCAGCattcaaggaggggaggtaagCCTTTTGTATC
TCTTGTTTATGCCTCTTTCCCGTGGATGTAGGGCCACCTACGGTTCACGC
CAAGAAATGGACACATCGAGTGTacactttcttcttcaacgccttatttc
ttttcttgAACTTGCTTGCATGAATCAGGTACAAGGAGGCTCTAGCGCTC
TATACCCAAGGTGTGGCTATAGACCCCGACAACCACGTTTTGTACAGCAA
TCGAAGCGCCGCCTTTCTGAAAGAATCTGAACGGGGCAAGGTACGTCATT
CTGTCCGAAAGAATGtctgggggagaggggttCCGTGTCGGCTGGTTCGG
GCTTCCTTATGCTGCGTGCGACATTATTATGGAAATACCACCCATGTTAC
GTGAACGTTGTGGTTTAGGGAAGAAAATCGCCAATTCTTTACAGATTTCA
TTTTCCTTTCAAGAGCAATACCTACTCACCttcgctttttcctttcccac
tcttcctcccctttcttaccggccgccctccctccctcccttcctccctc
ccttcctccctcccctcctccctcctgtcctctctTCCAGGCTTTAAAAG
ACGCGGAGAGGCTGATGGAAATCAAACCGGACTGGCCAAAGTCCTACTCT
CGAAAAGGCGCCGCTCAACACGCCCTCACTCGCTACGCGGtatgcctccc
ctccctccctccctccctccctccctcccgcccgcccgccctccctcctt
cctttcctctgcttccatGTGCAGCGGCTTCCAACACTCATCATGACGCC
TCTAGATAACGTAG
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Coding sequence (CDS) from alignment at CM002470.1:70907..72020+

>rna6942 ID=rna6942|Name=rna6942|organism=Nannochloropsis gaditana|type=CDS|length=1596bp|location=Sequence derived from alignment at CM002470.1:70907..72020+ (Nannochloropsis gaditana)
ATGAGCGCACCTACATGCACGGGGGAAACGCCCTCTGCTTCATCTCACCA
AAGTgtagaaaaggaagagaaagcagacAAAGACAAAACAACGGAGGGAT
CCaatgaagaggacgaagaatACCGTGTCTTGGCTGAGCGGTACAAAGAT
GAAGGGAACGCAGCattcaaggaggggagGTACAAGGAGGCTCTAGCGCT
CTATACCCAAGGTGTGGCTATAGACCCCGACAACCACGTTTTGTACAGCA
ATCGAAGCGCCGCCTTTCTGAAAGAATCTGAACGGGGCAAGGCTTTAAAA
GACGCGGAGAGGCTGATGGAAATCAAACCGGACTGGCCAAAGTCCTACTC
TCGAAAAGGCGCCGCTCAACACGCCCTCACTCGCTACGCGATAACGTAGA
TGAGCGCACCTACATGCACGGGGGAAACGCCCTCTGCTTCATCTCACCAA
AGTgtagaaaaggaagagaaagcagacAAAGACAAAACAACGGAGGGATC
CaatgaagaggacgaagaatACCGTGTCTTGGCTGAGCGGTACAAAGATG
AAGGGAACGCAGCattcaaggaggggagGTACAAGGAGGCTCTAGCGCTC
TATACCCAAGGTGTGGCTATAGACCCCGACAACCACGTTTTGTACAGCAA
TCGAAGCGCCGCCTTTCTGAAAGAATCTGAACGGGGCAAGGCTTTAAAAG
ACGCGGAGAGGCTGATGGAAATCAAACCGGACTGGCCAAAGTCCTACTCT
CGAAAAGGCGCCGCTCAACACGCCCTCACTCGCTACGCGATAACGTAGAT
GAGCGCACCTACATGCACGGGGGAAACGCCCTCTGCTTCATCTCACCAAA
GTgtagaaaaggaagagaaagcagacAAAGACAAAACAACGGAGGGATCC
aatgaagaggacgaagaatACCGTGTCTTGGCTGAGCGGTACAAAGATGA
AGGGAACGCAGCattcaaggaggggagGTACAAGGAGGCTCTAGCGCTCT
ATACCCAAGGTGTGGCTATAGACCCCGACAACCACGTTTTGTACAGCAAT
CGAAGCGCCGCCTTTCTGAAAGAATCTGAACGGGGCAAGGCTTTAAAAGA
CGCGGAGAGGCTGATGGAAATCAAACCGGACTGGCCAAAGTCCTACTCTC
GAAAAGGCGCCGCTCAACACGCCCTCACTCGCTACGCGATAACGTAGATG
AGCGCACCTACATGCACGGGGGAAACGCCCTCTGCTTCATCTCACCAAAG
TgtagaaaaggaagagaaagcagacAAAGACAAAACAACGGAGGGATCCa
atgaagaggacgaagaatACCGTGTCTTGGCTGAGCGGTACAAAGATGAA
GGGAACGCAGCattcaaggaggggagGTACAAGGAGGCTCTAGCGCTCTA
TACCCAAGGTGTGGCTATAGACCCCGACAACCACGTTTTGTACAGCAATC
GAAGCGCCGCCTTTCTGAAAGAATCTGAACGGGGCAAGGCTTTAAAAGAC
GCGGAGAGGCTGATGGAAATCAAACCGGACTGGCCAAAGTCCTACTCTCG
AAAAGGCGCCGCTCAACACGCCCTCACTCGCTACGCGATAACGTAG
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Synonyms
Publications