rna6936, rna6936 (mRNA) Nannochloropsis gaditana

Overview
Namerna6936
Unique Namerna6936
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002470.1:57818..59067 +

Link to JBrowse

Properties
Property NameValue
Productphosphotyrosyl phosphatase activator family protein
Orig transcript idgnl|cribi|Naga_101538g1.10044.mrna
Orig protein idgnl|cribi|Naga_101538g1.10044
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:57818..59067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101538g1gene6702Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6936rna6936-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23753.1cds6920Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6936 ID=rna6936|Name=rna6936|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGGATGTTAAGGTGTGGCTGGATGAGCTCGACGTGAATGGCCTTTTGGC
CCCTCATGCGCTCCTCTCCATGTTCGAGCGGGGACGAAGCGATGCTCTGG
GGGGGCCGGACCGCTTGGAGGCCCTGATGGCAGAGGGGTTCATGTTCGTC
GTCGCTCGTCTCGACGGCTACCCGATGCCATTGTGGTGTGTCAGCAGGTA
G
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protein sequence of rna6936

>rna6936-protein ID=rna6936-protein|Name=rna6936|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYP
NKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAP
RAIENLLVASQVGR
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mRNA from alignment at CM002470.1:57818..59067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6936 ID=rna6936|Name=rna6936|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at CM002470.1:57818..59067+ (Nannochloropsis gaditana)
CGTTCCAAGCAGAAAACTGGCAGAAAAATGCCAACAAGTTGTGACAAACC
CATCTTATCCCCACAAGTTCTCCCTTTGACCTCCGTATTAACACGAgccc
tttccattttctaATTTCGAAATTTTAATTGGTTTTCTGGAGACGTggcg
atggggaagaggaagaccttgGTCCGGGCAATCACTACACAAACAGATTT
GGAAGCTTTTCAGAATAGTAAGGTAAGTACCAGTCACGCCAAGTAAGCTT
AGCACGTCACATGGAGCTTTAGagcaaaggaaagagggcgaaTGCTCACG
AACATTGCCTTGTGGTGCGTGTATAGATCGTAGAAAGTGCTGAGAAATTT
GTTCAGTTCTACTTGGTTCATCTCCTCAGctgctttctccgcctttaCTC
GACGCTTTTCTTAACCGTTGCCTTTTTCAAATAATTGCACCTTCAAGACA
TATGCCGACTTCCTCGCCTTCATTCGGGCGTGCAACCAGAGCGTTCGTGG
CATCGCTATCAGCCAGGACTATCCCAACAAGAACGGGTAAAAAAGAGtgg
caagaggaaaaggaggagggaatgactGTAAAGGGAAGATGCCGTCCCCG
GGAGAGATAGGGGTCCATCTTAAACGTTTGATCAAGCGAATACAGGGCTT
TCTGGAGAAAAATGCGGGGAGCCACGGCACCTGATCCGAttctttcctgc
ctcttcccttcctccttcccttcctgtctcccaccctcccttccttcacc
cccctccccatgccctTAACTCCACTCTTCCGGCATTAATTTTCCCTGAA
CCACTCTAGTCCTGTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGCGT
GGGGTTGGGTGGACGACATCCCGGCGCTGCAGCAGGTaccgggagagggc
gaggacaagcggaggaaggagggggggagggagggaaggagggcaggagg
gagggagagaagatggggaagaaggccaTCGTGATTGtgaacaaggaagg
ggagaaacaTGGCGTAGGCGAGAAGGCGTTTCGCCTGCttgcatcctctt
cctccctccctcttttcctctctccctccctccctccctcactccctcct
tgtACCTCTCTACAGCCCATGCGATTTGGGAACAAGGCCTTCAGGACATG
GCACGCTCGCTTAGAAGCCACCGCGCCCCGCGCCATCGAGAACCTCCTGG
TCGCCTCCCaggtaggtaggtagggagggagggagggagggagggaagga
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Coding sequence (CDS) from alignment at CM002470.1:57818..59067+

>rna6936 ID=rna6936|Name=rna6936|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at CM002470.1:57818..59067+ (Nannochloropsis gaditana)
atggggaagaggaagaccttgGTCCGGGCAATCACTACACAAACAGATTT
GGAAGCTTTTCAGAATAGTAAGACATATGCCGACTTCCTCGCCTTCATTC
GGGCGTGCAACCAGAGCGTTCGTGGCATCGCTATCAGCCAGGACTATCCC
AACAAGAACGGTCCTGTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGC
GTGGGGTTGGGTGGACGACATCCCGGCGCTGCAGCAGCCCATGCGATTTG
GGAACAAGGCCTTCAGGACATGGCACGCTCGCTTAGAAGCCACCGCGCCC
CGCGCCATCGAGAACCTCCTGGTCGCCTCCCaggtaggtaggtagatggg
gaagaggaagaccttgGTCCGGGCAATCACTACACAAACAGATTTGGAAG
CTTTTCAGAATAGTAAGACATATGCCGACTTCCTCGCCTTCATTCGGGCG
TGCAACCAGAGCGTTCGTGGCATCGCTATCAGCCAGGACTATCCCAACAA
GAACGGTCCTGTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGCGTGGG
GTTGGGTGGACGACATCCCGGCGCTGCAGCAGCCCATGCGATTTGGGAAC
AAGGCCTTCAGGACATGGCACGCTCGCTTAGAAGCCACCGCGCCCCGCGC
CATCGAGAACCTCCTGGTCGCCTCCCaggtaggtaggtagatggggaaga
ggaagaccttgGTCCGGGCAATCACTACACAAACAGATTTGGAAGCTTTT
CAGAATAGTAAGACATATGCCGACTTCCTCGCCTTCATTCGGGCGTGCAA
CCAGAGCGTTCGTGGCATCGCTATCAGCCAGGACTATCCCAACAAGAACG
GTCCTGTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGCGTGGGGTTGG
GTGGACGACATCCCGGCGCTGCAGCAGCCCATGCGATTTGGGAACAAGGC
CTTCAGGACATGGCACGCTCGCTTAGAAGCCACCGCGCCCCGCGCCATCG
AGAACCTCCTGGTCGCCTCCCaggtaggtaggtagatggggaagaggaag
accttgGTCCGGGCAATCACTACACAAACAGATTTGGAAGCTTTTCAGAA
TAGTAAGACATATGCCGACTTCCTCGCCTTCATTCGGGCGTGCAACCAGA
GCGTTCGTGGCATCGCTATCAGCCAGGACTATCCCAACAAGAACGGTCCT
GTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGCGTGGGGTTGGGTGGA
CGACATCCCGGCGCTGCAGCAGCCCATGCGATTTGGGAACAAGGCCTTCA
GGACATGGCACGCTCGCTTAGAAGCCACCGCGCCCCGCGCCATCGAGAAC
CTCCTGGTCGCCTCCCaggtaggtaggtag
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Synonyms
Publications