EWM23753.1, cds6920 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|585104954|gb|EWM23753.1| (phosphotyrosyl phosphatase activator family protein [Nannochloropsis gaditana]) HSP 1 Score: 238.424 bits (607), Expect = 1.123e-79 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR 114
MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR
Sbjct: 1 MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR 114
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|298715647|emb|CBJ28173.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 98.5969 bits (244), Expect = 2.907e-22 Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 0
Query: 8 VRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGI---AISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
VRAI T TDL F+ S TY + + FIR CN +V G+ ++ D P+ VS +V L + WVDDIP + +PMRFGNKAFR+W+ RLE A ++ LL
Sbjct: 7 VRAIRTVTDLNHFKQSPTYKELMTFIRLCNDAVMGVRASSLQLDTPDTAMDTVSRIVRMLRQMGSWVDDIPPIDEPMRFGNKAFRSWYQRLEQEAGGMVDTLL 109
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|669169919|ref|XP_008620308.1| (hypothetical protein SDRG_15900 [Saprolegnia diclina VS20] >gi|530727997|gb|EQC26239.1| hypothetical protein SDRG_15900 [Saprolegnia diclina VS20]) HSP 1 Score: 88.5817 bits (218), Expect = 1.392e-18 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 0
Query: 9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVA 109
RAI ++ D+ F S Y L FI+ N+SVRG +S +Y P + AL L W+D+IP + QPMRFGNKAFR W+ RL AP+ E+LL +
Sbjct: 12 RAIFSEADMRQFLASDAYERHLVFIKHLNESVRGKKLSDEY--TMSPNIEALCGLLATLNSWIDEIPPIDQPMRFGNKAFRDWYDRLAQEAPKLHESLLAS 110
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|673019950|ref|XP_008863936.1| (hypothetical protein H310_02265 [Aphanomyces invadans] >gi|574480850|gb|ETW07843.1| hypothetical protein H310_02265 [Aphanomyces invadans]) HSP 1 Score: 87.8113 bits (216), Expect = 2.563e-18 Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 0
Query: 9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYP-NKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQV 112
R+I ++ DL F S Y + L F++ N+SV+G ++ D P +KN V AL++ L W+D+IP + QPMRFGNKAFR W+ RL +PR E +L S+V
Sbjct: 10 RSIFSEADLRQFLRSSAYENILRFVKHLNESVKGKKLTDDVPVSKNVESVMALLSTLN---AWIDEIPPIAQPMRFGNKAFRMWYDRLVDESPRLHEAILEPSEV 111
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|698782831|ref|XP_009824459.1| (hypothetical protein H257_02489 [Aphanomyces astaci] >gi|574120509|gb|ETV85987.1| hypothetical protein H257_02489 [Aphanomyces astaci]) HSP 1 Score: 87.8113 bits (216), Expect = 3.153e-18 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query: 9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYP-NKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
RAI ++ DL F S Y L F++ N+SV+G ++ D P +KN V A++A L W+D+IP + QPMRFGNKAFRTW+ RL +PR E +L
Sbjct: 10 RAIFSEADLRQFLRSNAYEMILRFVKHLNESVKGKKLTDDIPVSKNVESVLAVLATLNT---WIDEIPPIAQPMRFGNKAFRTWYDRLVDESPRIHEAML 106
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|1173946583|gb|OQR95096.1| (serine/threonine-protein phosphatase 2A regulatory subunit B' [Achlya hypogyna]) HSP 1 Score: 85.1149 bits (209), Expect = 2.541e-17 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 0
Query: 9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVG 113
RAI ++ D+ F S Y L FI+ N+SVRG IS D+ + ++A+ L W+DDIP + QPMRFGNKAFR W+ RL A R E LL +Q+G
Sbjct: 12 RAIFSEADMRKFIASDAYERHLIFIKHLNESVRGKKISDDFVVSDS--INAICDLLATLDSWIDDIPPIAQPMRFGNKAFRDWYDRLAQEAHRLHEGLL--AQIG 112
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|813117127|ref|XP_012195544.1| (hypothetical protein SPRG_01788 [Saprolegnia parasitica CBS 223.65] >gi|641540113|gb|KDO33908.1| hypothetical protein SPRG_01788 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 85.1149 bits (209), Expect = 2.875e-17 Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 0
Query: 9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVA 109
RAI ++ D+ F S Y L FI+ N+SVRG ++ +Y P V AL L W+D+IP + QPMRFGNKAFR W+ RL AP+ +LL +
Sbjct: 12 RAIFSEADMRQFLASDAYERHLVFIKHLNESVRGKKLTDEY--TVSPNVEALCGLLATLNSWIDEIPPIDQPMRFGNKAFRDWYDRLAQEAPKLHASLLAS 110
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|566020698|gb|ETI43609.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568046456|gb|ETM43565.1| hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 85.1149 bits (209), Expect = 2.901e-17 Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0
Query: 2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
G K RAI Q+DL F S L F++ N+SV+G IS +Y + P V V + E W+DDIP +QQPMRFGNKAFRT++ R+ P E++L
Sbjct: 8 GGFKEPSRAIFAQSDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|567958085|gb|ETK83678.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567986776|gb|ETL37093.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568016085|gb|ETL90262.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570324357|gb|ETO72305.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570948168|gb|ETP13425.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570980970|gb|ETP41497.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 85.1149 bits (209), Expect = 2.991e-17 Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0
Query: 2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
G K RAI Q+DL F S L F++ N+SV+G IS +Y + P V V + E W+DDIP +QQPMRFGNKAFRT++ R+ P E++L
Sbjct: 8 GGFKEPSRAIFAQSDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|675197355|ref|XP_008907562.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568092377|gb|ETN07186.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310]) HSP 1 Score: 84.3445 bits (207), Expect = 4.980e-17 Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 0
Query: 2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
G K RAI Q DL F S L F++ N+SV+G IS +Y + P V V + E W+DDIP +QQPMRFGNKAFRT++ R+ P E++L
Sbjct: 8 GGFKEPSRAIFAQNDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111 The following BLAST results are available for this feature:
BLAST of EWM23753.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|