EWM23753.1, cds6920 (CDS) Nannochloropsis gaditana

Overview
NameEWM23753.1
Unique Namecds6920
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:57968..58039 +
Alignment locationCM002470.1:58265..58353 +
Alignment locationCM002470.1:58627..58702 +
Alignment locationCM002470.1:58933..59040 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23753.1
Productphosphotyrosyl phosphatase activator family protein
Orig transcript idgnl|cribi|Naga_101538g1.10044.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:57968..58039 +
CM002470.1supercontigCM002470.1:58265..58353 +
CM002470.1supercontigCM002470.1:58627..58702 +
CM002470.1supercontigCM002470.1:58933..59040 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0003824catalytic activity
GO:0019211phosphatase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004327Phstyr_phstse_ac
Homology
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|585104954|gb|EWM23753.1| (phosphotyrosyl phosphatase activator family protein [Nannochloropsis gaditana])

HSP 1 Score: 238.424 bits (607), Expect = 1.123e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR 114
            MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR
Sbjct:    1 MGKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVGR 114          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|298715647|emb|CBJ28173.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.5969 bits (244), Expect = 2.907e-22
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 0
Query:    8 VRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGI---AISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
            VRAI T TDL  F+ S TY + + FIR CN +V G+   ++  D P+     VS +V  L +   WVDDIP + +PMRFGNKAFR+W+ RLE  A   ++ LL
Sbjct:    7 VRAIRTVTDLNHFKQSPTYKELMTFIRLCNDAVMGVRASSLQLDTPDTAMDTVSRIVRMLRQMGSWVDDIPPIDEPMRFGNKAFRSWYQRLEQEAGGMVDTLL 109          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|669169919|ref|XP_008620308.1| (hypothetical protein SDRG_15900 [Saprolegnia diclina VS20] >gi|530727997|gb|EQC26239.1| hypothetical protein SDRG_15900 [Saprolegnia diclina VS20])

HSP 1 Score: 88.5817 bits (218), Expect = 1.392e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 0
Query:    9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVA 109
            RAI ++ D+  F  S  Y   L FI+  N+SVRG  +S +Y     P + AL   L     W+D+IP + QPMRFGNKAFR W+ RL   AP+  E+LL +
Sbjct:   12 RAIFSEADMRQFLASDAYERHLVFIKHLNESVRGKKLSDEY--TMSPNIEALCGLLATLNSWIDEIPPIDQPMRFGNKAFRDWYDRLAQEAPKLHESLLAS 110          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|673019950|ref|XP_008863936.1| (hypothetical protein H310_02265 [Aphanomyces invadans] >gi|574480850|gb|ETW07843.1| hypothetical protein H310_02265 [Aphanomyces invadans])

HSP 1 Score: 87.8113 bits (216), Expect = 2.563e-18
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYP-NKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQV 112
            R+I ++ DL  F  S  Y + L F++  N+SV+G  ++ D P +KN   V AL++ L     W+D+IP + QPMRFGNKAFR W+ RL   +PR  E +L  S+V
Sbjct:   10 RSIFSEADLRQFLRSSAYENILRFVKHLNESVKGKKLTDDVPVSKNVESVMALLSTLN---AWIDEIPPIAQPMRFGNKAFRMWYDRLVDESPRLHEAILEPSEV 111          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|698782831|ref|XP_009824459.1| (hypothetical protein H257_02489 [Aphanomyces astaci] >gi|574120509|gb|ETV85987.1| hypothetical protein H257_02489 [Aphanomyces astaci])

HSP 1 Score: 87.8113 bits (216), Expect = 3.153e-18
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYP-NKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
            RAI ++ DL  F  S  Y   L F++  N+SV+G  ++ D P +KN   V A++A L     W+D+IP + QPMRFGNKAFRTW+ RL   +PR  E +L
Sbjct:   10 RAIFSEADLRQFLRSNAYEMILRFVKHLNESVKGKKLTDDIPVSKNVESVLAVLATLNT---WIDEIPPIAQPMRFGNKAFRTWYDRLVDESPRIHEAML 106          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|1173946583|gb|OQR95096.1| (serine/threonine-protein phosphatase 2A regulatory subunit B' [Achlya hypogyna])

HSP 1 Score: 85.1149 bits (209), Expect = 2.541e-17
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 0
Query:    9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVASQVG 113
            RAI ++ D+  F  S  Y   L FI+  N+SVRG  IS D+   +   ++A+   L     W+DDIP + QPMRFGNKAFR W+ RL   A R  E LL  +Q+G
Sbjct:   12 RAIFSEADMRKFIASDAYERHLIFIKHLNESVRGKKISDDFVVSDS--INAICDLLATLDSWIDDIPPIAQPMRFGNKAFRDWYDRLAQEAHRLHEGLL--AQIG 112          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|813117127|ref|XP_012195544.1| (hypothetical protein SPRG_01788 [Saprolegnia parasitica CBS 223.65] >gi|641540113|gb|KDO33908.1| hypothetical protein SPRG_01788 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 85.1149 bits (209), Expect = 2.875e-17
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 0
Query:    9 RAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLLVA 109
            RAI ++ D+  F  S  Y   L FI+  N+SVRG  ++ +Y     P V AL   L     W+D+IP + QPMRFGNKAFR W+ RL   AP+   +LL +
Sbjct:   12 RAIFSEADMRQFLASDAYERHLVFIKHLNESVRGKKLTDEY--TVSPNVEALCGLLATLNSWIDEIPPIDQPMRFGNKAFRDWYDRLAQEAPKLHASLLAS 110          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|566020698|gb|ETI43609.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568046456|gb|ETM43565.1| hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 85.1149 bits (209), Expect = 2.901e-17
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0
Query:    2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
            G  K   RAI  Q+DL  F  S      L F++  N+SV+G  IS +Y  +  P V   V  + E   W+DDIP +QQPMRFGNKAFRT++ R+    P   E++L
Sbjct:    8 GGFKEPSRAIFAQSDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|567958085|gb|ETK83678.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567986776|gb|ETL37093.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568016085|gb|ETL90262.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570324357|gb|ETO72305.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570948168|gb|ETP13425.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570980970|gb|ETP41497.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 85.1149 bits (209), Expect = 2.991e-17
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0
Query:    2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
            G  K   RAI  Q+DL  F  S      L F++  N+SV+G  IS +Y  +  P V   V  + E   W+DDIP +QQPMRFGNKAFRT++ R+    P   E++L
Sbjct:    8 GGFKEPSRAIFAQSDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111          
BLAST of EWM23753.1 vs. NCBI_GenBank
Match: gi|675197355|ref|XP_008907562.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568092377|gb|ETN07186.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310])

HSP 1 Score: 84.3445 bits (207), Expect = 4.980e-17
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 0
Query:    2 GKRKTLVRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPVVSALVAYLEEAWGWVDDIPALQQPMRFGNKAFRTWHARLEATAPRAIENLL 107
            G  K   RAI  Q DL  F  S      L F++  N+SV+G  IS +Y  +  P V   V  + E   W+DDIP +QQPMRFGNKAFRT++ R+    P   E++L
Sbjct:    8 GGFKEPSRAIFAQNDLRHFLGSPAQQMILVFVKHLNESVKGKRISSEY--EVSPNVQKAVDLINEINSWIDDIPPIQQPMRFGNKAFRTFYDRVVEKTPAMQEDML 111          
The following BLAST results are available for this feature:
BLAST of EWM23753.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104954|gb|EWM23753.1|1.123e-79100.00phosphotyrosyl phosphatase activator family protei... [more]
gi|298715647|emb|CBJ28173.1|2.907e-2246.60conserved unknown protein [Ectocarpus siliculosus][more]
gi|669169919|ref|XP_008620308.1|1.392e-1843.56hypothetical protein SDRG_15900 [Saprolegnia dicli... [more]
gi|673019950|ref|XP_008863936.1|2.563e-1842.86hypothetical protein H310_02265 [Aphanomyces invad... [more]
gi|698782831|ref|XP_009824459.1|3.153e-1845.00hypothetical protein H257_02489 [Aphanomyces astac... [more]
gi|1173946583|gb|OQR95096.1|2.541e-1743.81serine/threonine-protein phosphatase 2A regulatory... [more]
gi|813117127|ref|XP_012195544.1|2.875e-1742.57hypothetical protein SPRG_01788 [Saprolegnia paras... [more]
gi|566020698|gb|ETI43609.1|2.901e-1742.45hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567958085|gb|ETK83678.1|2.991e-1742.45hypothetical protein, variant 2 [Phytophthora para... [more]
gi|675197355|ref|XP_008907562.1|4.980e-1742.45hypothetical protein, variant 2 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6936rna6936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications