rna6932, rna6932 (mRNA) Nannochloropsis gaditana

Overview
Namerna6932
Unique Namerna6932
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length375
Alignment locationCM002470.1:47475..47769 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100573g1.6245.mrna
Orig protein idgnl|cribi|Naga_100573g1.6245
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:47475..47769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100573g1gene6698Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6932rna6932-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23756.1cds6916Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6932 ID=rna6932|Name=rna6932|organism=Nannochloropsis gaditana|type=mRNA|length=375bp
TTCCCCATGCAGCAACAGAAACAAGAAGCGCTTCCTGTCCCCTCTCCCGC
CCTCCCACCTTCCCCCGCTGCCTCTTCCTACGACTCTTTCCATCAATCCG
CTCGCATGATGTTCAACTTTGCACAGGCCCTCTCCGCCATCGTCCTGGCG
GGCAGGGAGGCGACGCGTCTGGCAGGCTATACCTCTCGGGTCACGCGCCT
CGAACGCCTCATCGATGACCTGGAGCGCGACGAAGCAAGATCCACCGCAT
CGGAGTTTTTGGAGAAGAAAGATGTGATAGAGCTCCAGGGTGTGCCCATC
GTCGCTCCGGTCGTCGGTGAGGAGGGAGGGAAGAAGGGGGGGAGGGAGGA
GGGAGGGAGGAGGAGGAGGAGGAGG
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protein sequence of rna6932

>rna6932-protein ID=rna6932-protein|Name=rna6932|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MVPRESTDSAPLRFAEAWFRMTNWEVTKRDAMVLEPTLRLDLSLRAIDGR
IRSSSSRSRIKAKKYCK
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mRNA from alignment at CM002470.1:47475..47769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6932 ID=rna6932|Name=rna6932|organism=Nannochloropsis gaditana|type=mRNA|length=295bp|location=Sequence derived from alignment at CM002470.1:47475..47769+ (Nannochloropsis gaditana)
ATGGTGCCGCGCGAGTCGACTGATTCAGCGCCCCGTCCATCCACGTACTG
ACAGGCCCATGCAGACACTGGAACCGGAAGCTGCCGAAGGGAACGGAGAT
ATAAAGTACACCTGATGAATATAAGTGCGATTCGCGGAGGCTTGGTTTCG
CATGACAAATTGGGAGGTCACTAAGCGTGATGCTATGGTACTAGAACCCA
CACTCAGGCTCGATTTGTCTTTGAGAGCCATAGATGGTAGAATAAGATCG
AGTTCATCACGGTCTAGGATCAAAGCTAAGAAGTACTGTAAATAA
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Coding sequence (CDS) from alignment at CM002470.1:47475..47769+

>rna6932 ID=rna6932|Name=rna6932|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002470.1:47475..47769+ (Nannochloropsis gaditana)
ATGGTGCCGCGCGAGTCGACTGATTCAGCGCCCCTGCGATTCGCGGAGGC
TTGGTTTCGCATGACAAATTGGGAGGTCACTAAGCGTGATGCTATGGTAC
TAGAACCCACACTCAGGCTCGATTTGTCTTTGAGAGCCATAGATGGTAGA
ATAAGATCGAGTTCATCACGGTCTAGGATCAAAGCTAAGAAGTACTGTAA
ATAAATGGTGCCGCGCGAGTCGACTGATTCAGCGCCCCTGCGATTCGCGG
AGGCTTGGTTTCGCATGACAAATTGGGAGGTCACTAAGCGTGATGCTATG
GTACTAGAACCCACACTCAGGCTCGATTTGTCTTTGAGAGCCATAGATGG
TAGAATAAGATCGAGTTCATCACGGTCTAGGATCAAAGCTAAGAAGTACT
GTAAATAA
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Synonyms
Publications