rna6931, rna6931 (mRNA) Nannochloropsis gaditana

Overview
Namerna6931
Unique Namerna6931
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length624
Alignment locationCM002470.1:46054..46789 +

Link to JBrowse

Properties
Property NameValue
Productatp-binding cassette sub-family d member 3 isoform a
Orig transcript idgnl|cribi|Naga_102509g1.4016.mrna
Orig protein idgnl|cribi|Naga_102509g1.4016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:46054..46789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102509g1gene6697Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6931rna6931-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23758.1cds6915Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6931 ID=rna6931|Name=rna6931|organism=Nannochloropsis gaditana|type=mRNA|length=624bp
GCACAGGGAAATCGAGCAGCTTATGACCGTGGACGTGGACAAGTTCTCCC
TGTGCATTACGGAGCTGGCCTCAAACCTCCTAAAGCCAACCCTTGATATT
CTTCTTTACGCAACAAAATTACAAACCTCGGTCGGTCCCCTGATCCCGTT
AGCCATGGCTAGCTACCTCTTCTCCTCTGGCACAGCCTTGACGCGCCTGC
GAAGACCTGCCGCAGAGTATACGGCCGCGATCCAACGGCGCGAGGGCGAC
TACAGATTTGTGACGAATAGAATGGTCGCGCACGCCGAAGAGATCGCTTT
CTACGATGGAGTGGGGAGGGAAAAAAACTACCTGCAGCGGATCTTCGGTT
CTTTGTTGGGAACGATCCGGCGCGGCTCCCGGTTCCGCCACGCGATGGAC
ATCCTCGATAGTGTCATGGCCAAGTACATAGCCACCGCTCTTGGCTGGAT
GCTTTTGAATCGCGCGGCTCAGGTACCCCCGGCTTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCTTCCTTCCTTCCCTTCTATTCTCTCGCCTTGC
TTACTCTTGGCGGGTGTTCTCAGGGCAGATTGCAGGGATCATCTTGATGT
GGATAGATCTCGGTTGTAATGGGT
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protein sequence of rna6931

>rna6931-protein ID=rna6931-protein|Name=rna6931|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGR
EATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVA
PVVGEEGGKKGGREEGGRRRRRR
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mRNA from alignment at CM002470.1:46054..46789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6931 ID=rna6931|Name=rna6931|organism=Nannochloropsis gaditana|type=mRNA|length=736bp|location=Sequence derived from alignment at CM002470.1:46054..46789+ (Nannochloropsis gaditana)
ttccccatgcAGCAACAGAAACAAGAAGCGCTTCCtgtcccctctcccgc
cctcccaccttcccccgctGCCTCTTCCTACGACTCTTTCCATCAATCCG
CTCGCATGATGTTCAACTTTGCACAGGCCCTCTCCGCCATCGTCCTGGCG
GGCAGGtgacgctttcctccctccttccctccctccctccctcccttgtt
ttattccttcccccctcctttcctccctcccttcccactctTCCCACCTC
TGTCtttcctctttgccttgttccgccctccttccctccctccttccttc
ccatacttgtttctccccttccctccctgccgtcgtcgaccttccctttc
cccctccttccctcctctcccccttccctccccgtgcagGGAGGCGACGC
GTCTGGCAGGCTATACCTCTCGGGTCACGCGCCTCGAACGCCTCATCGAT
GACCTGGAGCGCGGTTCGTTCTTtgtccccttcgtcttccccctccaccc
gtCTTATTTTCTTTCTCGCGCCCTCAtcaaccctccttccctcccttcct
ccctcccttcctccctctttccctcccccccttccagaAGACGAAGCAAG
ATCCACCGCATCGGAGTTtttggagaagaaagatgTGATAGAGCTCCAGG
GTGTGCCCATCGTCGCTCCGGTCGtcggtgaggagggagggaagaagggg
gggagggaggagggagggaggaggaggaggaggagg
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Coding sequence (CDS) from alignment at CM002470.1:46054..46789+

>rna6931 ID=rna6931|Name=rna6931|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at CM002470.1:46054..46789+ (Nannochloropsis gaditana)
atgcAGCAACAGAAACAAGAAGCGCTTCCtgtcccctctcccgccctccc
accttcccccgctGCCTCTTCCTACGACTCTTTCCATCAATCCGCTCGCA
TGATGTTCAACTTTGCACAGGCCCTCTCCGCCATCGTCCTGGCGGGCAGG
GAGGCGACGCGTCTGGCAGGCTATACCTCTCGGGTCACGCGCCTCGAACG
CCTCATCGATGACCTGGAGCGCGACGAAGCAAGATCCACCGCATCGGAGT
TtttggagaagaaagatgTGATAGAGCTCCAGGGTGTGCCCATCGTCGCT
CCGGTCGtcggtgaggagggagggaagaagggggggagggaggagggagg
gaggaggaggaggaggaggatgcAGCAACAGAAACAAGAAGCGCTTCCtg
tcccctctcccgccctcccaccttcccccgctGCCTCTTCCTACGACTCT
TTCCATCAATCCGCTCGCATGATGTTCAACTTTGCACAGGCCCTCTCCGC
CATCGTCCTGGCGGGCAGGGAGGCGACGCGTCTGGCAGGCTATACCTCTC
GGGTCACGCGCCTCGAACGCCTCATCGATGACCTGGAGCGCGACGAAGCA
AGATCCACCGCATCGGAGTTtttggagaagaaagatgTGATAGAGCTCCA
GGGTGTGCCCATCGTCGCTCCGGTCGtcggtgaggagggagggaagaagg
gggggagggaggagggagggaggaggaggaggaggaggatgcAGCAACAG
AAACAAGAAGCGCTTCCtgtcccctctcccgccctcccaccttcccccgc
tGCCTCTTCCTACGACTCTTTCCATCAATCCGCTCGCATGATGTTCAACT
TTGCACAGGCCCTCTCCGCCATCGTCCTGGCGGGCAGGGAGGCGACGCGT
CTGGCAGGCTATACCTCTCGGGTCACGCGCCTCGAACGCCTCATCGATGA
CCTGGAGCGCGACGAAGCAAGATCCACCGCATCGGAGTTtttggagaaga
aagatgTGATAGAGCTCCAGGGTGTGCCCATCGTCGCTCCGGTCGtcggt
gaggagggagggaagaagggggggagggaggagggagggaggaggaggag
gaggagg
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Synonyms
Publications