EWM23758.1, cds6915 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|585104963|gb|EWM23758.1| (atp-binding cassette sub-family d member 3 isoform a, partial [Nannochloropsis gaditana]) HSP 1 Score: 246.128 bits (627), Expect = 1.709e-82 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR 123
MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR
Sbjct: 1 MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR 123
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|675626717|ref|XP_008941705.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Merops nubicus]) HSP 1 Score: 68.5514 bits (166), Expect = 5.488e-11 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query: 9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
L + P S A + ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + T L++KD + Q +P++ P GE
Sbjct: 281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTM--VLQEKDADKKQALPLI-PGSGE 374
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|926490803|ref|XP_013816793.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Apteryx australis mantelli]) HSP 1 Score: 67.781 bits (164), Expect = 8.328e-11 Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 0
Query: 9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDL------------ERDEARSTAS-------EFLEKKDVIELQGVPIVAP 101
L + P S A + ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL E+D R+ AS E + ++I+ VP+V P
Sbjct: 281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLSSGKYQRTMVSQEKDVDRTQASALIPGSGEIINTDNLIKFDHVPLVTP 392
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|443690939|gb|ELT92932.1| (hypothetical protein CAPTEDRAFT_164747 [Capitella teleta]) HSP 1 Score: 67.781 bits (164), Expect = 8.977e-11 Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 0
Query: 28 FHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLER----------DEARSTAS------EFLEKKDVIELQGVPIVAP 101
++QS RM+ A+A+ +VLAGRE TRLAG+T+RVT +++DDL + D+++ S + LEK +I + VP+V P
Sbjct: 291 YYQSGRMLVKMAEAIGRVVLAGREMTRLAGFTARVTEFMKVLDDLNKGKYERTMVNHDDSKQKTSHKPGDGKMLEKDHLIRFENVPLVTP 380
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|677432975|gb|KFQ32655.1| (ATP-binding cassette sub-family D member 3, partial [Merops nubicus]) HSP 1 Score: 67.781 bits (164), Expect = 9.302e-11 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query: 9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
L + P S A + ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + T L++KD + Q +P++ P GE
Sbjct: 301 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTM--VLQEKDADKKQALPLI-PGSGE 394
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|593772524|ref|XP_007124590.1| (PREDICTED: ATP-binding cassette sub-family D member 3-like [Physeter catodon]) HSP 1 Score: 67.0106 bits (162), Expect = 1.439e-10 Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
+ ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + T EK QG+P++ P VGE
Sbjct: 282 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKG----AQGIPLI-PGVGE 356
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|602715949|ref|XP_007468173.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X2 [Lipotes vexillifer]) HSP 1 Score: 67.0106 bits (162), Expect = 1.536e-10 Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 0
Query: 26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDE-ARSTASEFLEKKDVIELQGVPIVAPVVGE 105
+ ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + R+ S+ ++K + QG+P++ P VGE
Sbjct: 355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQ--QEKGIEGAQGIPLI-PGVGE 432
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|821382606|ref|XP_012389255.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X2 [Orcinus orca]) HSP 1 Score: 67.0106 bits (162), Expect = 1.628e-10 Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 0
Query: 26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDE-ARSTASEFLEKKDVIELQGVPIVAPVVGE 105
+ ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + R+ S+ ++K + QG+P++ P VGE
Sbjct: 355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQ--QEKGIEGAQGIPLI-PGVGE 432
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|1131276264|ref|XP_019775508.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X5 [Tursiops truncatus]) HSP 1 Score: 67.0106 bits (162), Expect = 1.817e-10 Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
+ ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + T EK QG+P++ P VGE
Sbjct: 355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKG----AQGIPLI-PGVGE 429
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|723135935|ref|XP_010284616.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Phaethon lepturus]) HSP 1 Score: 66.6254 bits (161), Expect = 1.994e-10 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query: 9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
L + P S A + ++QS RM+ +QAL IVLAGRE TRLAG+T+R+T L +++ DL + + T ++KDV + Q +P++ P GE
Sbjct: 281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTMVS--QEKDVDKQQVLPLI-PGSGE 374 The following BLAST results are available for this feature:
BLAST of EWM23758.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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