EWM23758.1, cds6915 (CDS) Nannochloropsis gaditana

Overview
NameEWM23758.1
Unique Namecds6915
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:46060..46208 +
Alignment locationCM002470.1:46443..46516 +
Alignment locationCM002470.1:46644..46789 +

Link to JBrowse

Properties
Property NameValue
End range.
End range46789
Protein idEWM23758.1
Productatp-binding cassette sub-family d member 3 isoform a
Partialtrue
Orig transcript idgnl|cribi|Naga_102509g1.4016.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:46060..46208 +
CM002470.1supercontigCM002470.1:46443..46516 +
CM002470.1supercontigCM002470.1:46644..46789 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005515protein binding
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome
Homology
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|585104963|gb|EWM23758.1| (atp-binding cassette sub-family d member 3 isoform a, partial [Nannochloropsis gaditana])

HSP 1 Score: 246.128 bits (627), Expect = 1.709e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR 123
            MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR
Sbjct:    1 MQQQKQEALPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGEEGGKKGGREEGGRRRRRR 123          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|675626717|ref|XP_008941705.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Merops nubicus])

HSP 1 Score: 68.5514 bits (166), Expect = 5.488e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query:    9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            L +  P    S  A   + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL   + + T    L++KD  + Q +P++ P  GE
Sbjct:  281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTM--VLQEKDADKKQALPLI-PGSGE 374          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|926490803|ref|XP_013816793.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Apteryx australis mantelli])

HSP 1 Score: 67.781 bits (164), Expect = 8.328e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 0
Query:    9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDL------------ERDEARSTAS-------EFLEKKDVIELQGVPIVAP 101
            L +  P    S  A   + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL            E+D  R+ AS       E +   ++I+   VP+V P
Sbjct:  281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLSSGKYQRTMVSQEKDVDRTQASALIPGSGEIINTDNLIKFDHVPLVTP 392          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|443690939|gb|ELT92932.1| (hypothetical protein CAPTEDRAFT_164747 [Capitella teleta])

HSP 1 Score: 67.781 bits (164), Expect = 8.977e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 0
Query:   28 FHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLER----------DEARSTAS------EFLEKKDVIELQGVPIVAP 101
            ++QS RM+   A+A+  +VLAGRE TRLAG+T+RVT   +++DDL +          D+++   S      + LEK  +I  + VP+V P
Sbjct:  291 YYQSGRMLVKMAEAIGRVVLAGREMTRLAGFTARVTEFMKVLDDLNKGKYERTMVNHDDSKQKTSHKPGDGKMLEKDHLIRFENVPLVTP 380          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|677432975|gb|KFQ32655.1| (ATP-binding cassette sub-family D member 3, partial [Merops nubicus])

HSP 1 Score: 67.781 bits (164), Expect = 9.302e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query:    9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            L +  P    S  A   + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL   + + T    L++KD  + Q +P++ P  GE
Sbjct:  301 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTM--VLQEKDADKKQALPLI-PGSGE 394          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|593772524|ref|XP_007124590.1| (PREDICTED: ATP-binding cassette sub-family D member 3-like [Physeter catodon])

HSP 1 Score: 67.0106 bits (162), Expect = 1.439e-10
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:   26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL + +   T     EK      QG+P++ P VGE
Sbjct:  282 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKG----AQGIPLI-PGVGE 356          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|602715949|ref|XP_007468173.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X2 [Lipotes vexillifer])

HSP 1 Score: 67.0106 bits (162), Expect = 1.536e-10
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDE-ARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL + +  R+  S+  ++K +   QG+P++ P VGE
Sbjct:  355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQ--QEKGIEGAQGIPLI-PGVGE 432          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|821382606|ref|XP_012389255.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X2 [Orcinus orca])

HSP 1 Score: 67.0106 bits (162), Expect = 1.628e-10
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDE-ARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL + +  R+  S+  ++K +   QG+P++ P VGE
Sbjct:  355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQ--QEKGIEGAQGIPLI-PGVGE 432          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|1131276264|ref|XP_019775508.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X5 [Tursiops truncatus])

HSP 1 Score: 67.0106 bits (162), Expect = 1.817e-10
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:   26 DSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL + +   T     EK      QG+P++ P VGE
Sbjct:  355 EDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKG----AQGIPLI-PGVGE 429          
BLAST of EWM23758.1 vs. NCBI_GenBank
Match: gi|723135935|ref|XP_010284616.1| (PREDICTED: ATP-binding cassette sub-family D member 3 [Phaethon lepturus])

HSP 1 Score: 66.6254 bits (161), Expect = 1.994e-10
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 0
Query:    9 LPVPSPALPPSPAASSYDSFHQSARMMFNFAQALSAIVLAGREATRLAGYTSRVTRLERLIDDLERDEARSTASEFLEKKDVIELQGVPIVAPVVGE 105
            L +  P    S  A   + ++QS RM+   +QAL  IVLAGRE TRLAG+T+R+T L +++ DL   + + T     ++KDV + Q +P++ P  GE
Sbjct:  281 LNLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNSGKYQRTMVS--QEKDVDKQQVLPLI-PGSGE 374          
The following BLAST results are available for this feature:
BLAST of EWM23758.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104963|gb|EWM23758.1|1.709e-82100.00atp-binding cassette sub-family d member 3 isoform... [more]
gi|675626717|ref|XP_008941705.1|5.488e-1139.18PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|926490803|ref|XP_013816793.1|8.328e-1135.71PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|443690939|gb|ELT92932.1|8.977e-1137.78hypothetical protein CAPTEDRAFT_164747 [Capitella ... [more]
gi|677432975|gb|KFQ32655.1|9.302e-1139.18ATP-binding cassette sub-family D member 3, partia... [more]
gi|593772524|ref|XP_007124590.1|1.439e-1043.75PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|602715949|ref|XP_007468173.1|1.536e-1043.21PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|821382606|ref|XP_012389255.1|1.628e-1043.21PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|1131276264|ref|XP_019775508.1|1.817e-1043.75PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|723135935|ref|XP_010284616.1|1.994e-1039.18PREDICTED: ATP-binding cassette sub-family D membe... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6931rna6931Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications