rna6925, rna6925 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6925
Unique Name	rna6925
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1393
Alignment location	CM002470.1:31084..32637 -

Link to JBrowse

Properties


Property Name	Value
Product	Phospholipase B
Orig transcript id	gnl\|cribi\|Naga_100439g1.2301.mrna
Orig protein id	gnl\|cribi\|Naga_100439g1.2301
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:31084..32637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100439g1	gene6691	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6925	rna6925-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23764.1	cds6909	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:31084..32637-
coding sequence from alignment at CM002470.1:31084..32637-

mRNA sequence

>rna6925 ID=rna6925|Name=rna6925|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp
TCCGATGCCCCACTACCATTTGTGCATTTCCTACCCCTTGTACACTTTTT
AATCTCCCCTTCGCTCTCCCTCTTTTCCTCCCTTCTTTCCTTCCTCCCTC
CCTCCATCCCTCCCTCCCGCATTCTCCAGGGCGGGCCCACCTCTCGTGTC
CTGGGAAGATTTTGAAAGGGCACTGGCTGAAGTCTCACCCATCAATACCA
CCAGCACCAGCTCTGCCGCTCCCTCATTCCTTCCTCGCTTCCTCCCTCCC
CCTATTCCGTCCTGGGGAATCCTCGACCCTAGTGTGACCCATGCCTCCGT
CCGCCACCGCCTCCACTCCCTCCTCGTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTCGTCTCCCTTTTGTCTGCTCTTGCACGGTCCCAGAGGGGTGGG
AAAGACCACGTTGCTAGCCTGGCTTGCCCGGGAGGTCACCTCCTTCCCCC
TCCCTCCCCTCTTCCTCTCCTTCCCCTCGGGTGCTTCTTCCGTGACCAAC
GACATCCAGGAGGCACTCAAGTCCATCGAAGAGGGGAAGGAGGGAACAGG
GAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGGACATGGCACGCCTCCTTT
TGGTCGACGGCCTTCAGAGCGAGGAGATGTGCTTCGACGTCGTTGCCGCT
CTTTCCAACTTCGCCTCCTCACATCCCTCCTCGTCGTCTTCTTCCTCTGT
CAGCACCCGACCCTCCCCCTCCTCCTCCCTCTCTTCCTCACCTTCGAATC
CACGACCTAAGCTGGTAGCTTTGATGGCCCTCTGCACCTCATCTGGCTCG
GATTCTTCCTCCCTCACACCTTCCTCATCTACCTCGCTCCCGTCCTCCTC
TCTGCGCGGTTCCGTGCACGCCCACTTCGGTCTGCCTGTTTTGACGGATT
TCGAAGGCGAGATCATGCCTACGCTTGAAAGAATGATGGAGGAACCATTA
GTGGGGGAAAGTACAGGAAAAGAGGCGATGAAAGCCACGATGCGGGGGCT
AGAGGGAGTGGTGGTGATGTCTAGGGCCCTCGGAGGAAAGGAAGGGAGAA
ACATGCTGGGCGAGATGCTGGAACACGTCTGGGTGTAAAGGAGGAAACGT
GAGTGAGGAGGAGGCATGCTCCTGAAAAAGAGGAGCAGGCGTCGTCGGGA
GGGAGTGGAGGGGTTATGTAGTGCGTCGATATAGTGGTTCTACACCTTTT
CCTATGGGACTGGCAGGCTTCCCTTTCATCGACGCCACGAAGAGCACCCA
GGGCGCGAGATATGGTGGTCGAGAGAAGGACCAGCCGAAAGCTTGCAATG
TCGGTAATCAACTAGAAATGCTCGACGATGATGACGTTGCCTCTTGCCAC
ACTTGGGGTTTTCCACATGCGAATGTAACGCAACAACAAATCC

protein sequence of rna6925

>rna6925-protein ID=rna6925-protein|Name=rna6925|organism=Nannochloropsis gaditana|type=polypeptide|length=275bp
MVLDASARSFNVLDQAPGKVSITEHSPLLFQPEPSLAPSSISSHSLIEQS
EKTTEIPGAYFASYNVPSDREIYDYLGFGLKDPSNIKYAVERYTGSPRER
MLSEGQLEVTSMAGMKRLIQYNDYMRDSRSLGHAYLAVAGRGDLEISYVN
SLKKENEGNFSFAQMNGSPFASLEGAMDAKVVSVNEAFSSPENHLSLHAR
VGPTYDQQPAFCWSDHPEEVNAFENGTHPDCFRFEWERLSPGTLLADMLA
RSQTRAEQRKSRNSLLLRGGGKRLY

mRNA from alignment at CM002470.1:31084..32637-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6925 ID=rna6925|Name=rna6925|organism=Nannochloropsis gaditana|type=mRNA|length=1554bp|location=Sequence derived from alignment at CM002470.1:31084..32637- (Nannochloropsis gaditana)
TCACCCAACAAGGAAAAAGTGACTAGTAATGTCTCTCATCCCTGACTATC
TTACTTCTTCACCGCCTTTCTTAGATTTTTTTAAAAGAAAATAGCGGGAC
GTACAACTGCGAATGGATGGTTCTAGACGCATCCGCGCGCTCATTCAACG
TGCTGGACCAGGTGCAGATTGAAGAGGAAATGGGAGAGAGGGGGGATAAT
TCAACCTTACACTGTAGATACGGGTGACAGAGAGAGGGGAAGTTGCGCCT
GTTGCAAAAGGAAACATGTCTTGAGTAATGAGAACCGGGGATACCAGGAC
AGGAAAGTACGAGAGGGTGTGATACACTCCTCCTTTACTGTTTTGTCTTC
TGCCATGCAATTGGTGCAATTGAATTGATGTAGTTGCCATTGTGCAAAAT
TAATTAGGGCCAACCCTAATTTCAAGTTCTCGTTCCCACCTATCCCTTTC
GGCCGCACAGGCACCAGGAAAAGTATCCATCACCGAGCATTCTCCCCTAC
TCTTCCAGCCTGAGCCCTCCCTCGCTCCTTCTTCCATCTCTTCTCACTCA
TTAATCGAGCAAAGCGAGAAAACGACTGAGATACCAGGAGCTTATTTTGC
CTCTTACAATGTGCCTTCCGACCGAGAGATATACGACTATTTGGGTTTCG
GATTAAAGGTGAGCTATTGGCGACGAGGAAAGAGGTGTGAAACGTATGGG
AAAAGATGATAGGGTACGACAAGACACTTTGTGGGATAATGACCGTAATA
AACATGGCAACAGGACCCGAGCAATATCAAGTACGCCGTGGAACGCTATA
CAGGCTCTCCTCGCGAGCGCATGCTTAGTGAGGGGCAATTAGAGGTGACC
TCTATGGCAGGCATGAAGGTACGGACATTTAAACAAGGCATGGTCAAAAG
AAAACGAAAACTTCAGGGGTTGAGATTCCTTATTGCAACGATTTCATGTC
ATTATGCACAGCGCCTTATCCAATACAATGATTACATGCGCGATTCTCGA
TCATTGGGCCATGCATATTTGGCAGTCGCGGGACGAGGTGACCTCGAAAT
CTCATACGTTAATAGCCTCAAAAAAGAAAACGAGGGCAATTTTTCCTTCG
CCCAAATGAATGGCTCCCCCTTTGCGTCGTTAGAGGGAGCGATGGATGCG
AAGGTTGTATCGGTCAACGAGGCTTTTTCCAGCCCCGAAAATCACCTAAG
CTTACATGCACGGGTGGGACCCACCTATGATCAGCAGCCAGCTTTTTGCT
GGAGTGATCATCCGGAGGAAGTCAATGCCTTTGAAAACGGCACGCATCCT
GATTGTTTCCGCTTTGAGTGGGAACGCCTTTCCCCTGGAACCCTTCTCGC
TGATATGCTTGCTCGCAGCCAAACTAGAGCAGAGCAAAGAAAGTCTCGAA
ATTCTCTTTTGCTGCGTGGAGGAGGAAAACGATTATATTGATCGTCAACT
ATTCAATCCGTATTTCAGCGCAGTAACTCAGTCAGCTTATCTGCATTTGT
AATAAATGAAAGCATTTTTTTAATGAAAGAAGACACAATTATGTATCGCT
TTTG

Coding sequence (CDS) from alignment at CM002470.1:31084..32637-

>rna6925 ID=rna6925|Name=rna6925|organism=Nannochloropsis gaditana|type=CDS|length=3312bp|location=Sequence derived from alignment at CM002470.1:31084..32637- (Nannochloropsis gaditana)
CGCCTTATCCAATACAATGATTACATGCGCGATTCTCGATCATTGGGCCA
TGCATATTTGGCAGTCGCGGGACGAGGTGACCTCGAAATCTCATACGTTA
ATAGCCTCAAAAAAGAAAACGAGGGCAATTTTTCCTTCGCCCAAATGAAT
GGCTCCCCCTTTGCGTCGTTAGAGGGAGCGATGGATGCGAAGGTTGTATC
GGTCAACGAGGCTTTTTCCAGCCCCGAAAATCACCTAAGCTTACATGCAC
GGGTGGGACCCACCTATGATCAGCAGCCAGCTTTTTGCTGGAGTGATCAT
CCGGAGGAAGTCAATGCCTTTGAAAACGGCACGCATCCTGATTGTTTCCG
CTTTGAGTGGGAACGCCTTTCCCCTGGAACCCTTCTCGCTGATATGCTTG
CTCGCAGCCAAACTAGAGCAGAGCAAAGAAAGTCTCGAAATTCTCTTTTG
CTGCGTGGAGGAGGAAAACGATTATATTGAGACCCGAGCAATATCAAGTA
CGCCGTGGAACGCTATACAGGCTCTCCTCGCGAGCGCATGCTTAGTGAGG
GGCAATTAGAGGTGACCTCTATGGCAGGCATGAAGGCACCAGGAAAAGTA
TCCATCACCGAGCATTCTCCCCTACTCTTCCAGCCTGAGCCCTCCCTCGC
TCCTTCTTCCATCTCTTCTCACTCATTAATCGAGCAAAGCGAGAAAACGA
CTGAGATACCAGGAGCTTATTTTGCCTCTTACAATGTGCCTTCCGACCGA
GAGATATACGACTATTTGGGTTTCGGATTAAAGATGGTTCTAGACGCATC
CGCGCGCTCATTCAACGTGCTGGACCAGCGCCTTATCCAATACAATGATT
ACATGCGCGATTCTCGATCATTGGGCCATGCATATTTGGCAGTCGCGGGA
CGAGGTGACCTCGAAATCTCATACGTTAATAGCCTCAAAAAAGAAAACGA
GGGCAATTTTTCCTTCGCCCAAATGAATGGCTCCCCCTTTGCGTCGTTAG
AGGGAGCGATGGATGCGAAGGTTGTATCGGTCAACGAGGCTTTTTCCAGC
CCCGAAAATCACCTAAGCTTACATGCACGGGTGGGACCCACCTATGATCA
GCAGCCAGCTTTTTGCTGGAGTGATCATCCGGAGGAAGTCAATGCCTTTG
AAAACGGCACGCATCCTGATTGTTTCCGCTTTGAGTGGGAACGCCTTTCC
CCTGGAACCCTTCTCGCTGATATGCTTGCTCGCAGCCAAACTAGAGCAGA
GCAAAGAAAGTCTCGAAATTCTCTTTTGCTGCGTGGAGGAGGAAAACGAT
TATATTGAGACCCGAGCAATATCAAGTACGCCGTGGAACGCTATACAGGC
TCTCCTCGCGAGCGCATGCTTAGTGAGGGGCAATTAGAGGTGACCTCTAT
GGCAGGCATGAAGGCACCAGGAAAAGTATCCATCACCGAGCATTCTCCCC
TACTCTTCCAGCCTGAGCCCTCCCTCGCTCCTTCTTCCATCTCTTCTCAC
TCATTAATCGAGCAAAGCGAGAAAACGACTGAGATACCAGGAGCTTATTT
TGCCTCTTACAATGTGCCTTCCGACCGAGAGATATACGACTATTTGGGTT
TCGGATTAAAGATGGTTCTAGACGCATCCGCGCGCTCATTCAACGTGCTG
GACCAGCGCCTTATCCAATACAATGATTACATGCGCGATTCTCGATCATT
GGGCCATGCATATTTGGCAGTCGCGGGACGAGGTGACCTCGAAATCTCAT
ACGTTAATAGCCTCAAAAAAGAAAACGAGGGCAATTTTTCCTTCGCCCAA
ATGAATGGCTCCCCCTTTGCGTCGTTAGAGGGAGCGATGGATGCGAAGGT
TGTATCGGTCAACGAGGCTTTTTCCAGCCCCGAAAATCACCTAAGCTTAC
ATGCACGGGTGGGACCCACCTATGATCAGCAGCCAGCTTTTTGCTGGAGT
GATCATCCGGAGGAAGTCAATGCCTTTGAAAACGGCACGCATCCTGATTG
TTTCCGCTTTGAGTGGGAACGCCTTTCCCCTGGAACCCTTCTCGCTGATA
TGCTTGCTCGCAGCCAAACTAGAGCAGAGCAAAGAAAGTCTCGAAATTCT
CTTTTGCTGCGTGGAGGAGGAAAACGATTATATTGAGACCCGAGCAATAT
CAAGTACGCCGTGGAACGCTATACAGGCTCTCCTCGCGAGCGCATGCTTA
GTGAGGGGCAATTAGAGGTGACCTCTATGGCAGGCATGAAGGCACCAGGA
AAAGTATCCATCACCGAGCATTCTCCCCTACTCTTCCAGCCTGAGCCCTC
CCTCGCTCCTTCTTCCATCTCTTCTCACTCATTAATCGAGCAAAGCGAGA
AAACGACTGAGATACCAGGAGCTTATTTTGCCTCTTACAATGTGCCTTCC
GACCGAGAGATATACGACTATTTGGGTTTCGGATTAAAGATGGTTCTAGA
CGCATCCGCGCGCTCATTCAACGTGCTGGACCAGCGCCTTATCCAATACA
ATGATTACATGCGCGATTCTCGATCATTGGGCCATGCATATTTGGCAGTC
GCGGGACGAGGTGACCTCGAAATCTCATACGTTAATAGCCTCAAAAAAGA
AAACGAGGGCAATTTTTCCTTCGCCCAAATGAATGGCTCCCCCTTTGCGT
CGTTAGAGGGAGCGATGGATGCGAAGGTTGTATCGGTCAACGAGGCTTTT
TCCAGCCCCGAAAATCACCTAAGCTTACATGCACGGGTGGGACCCACCTA
TGATCAGCAGCCAGCTTTTTGCTGGAGTGATCATCCGGAGGAAGTCAATG
CCTTTGAAAACGGCACGCATCCTGATTGTTTCCGCTTTGAGTGGGAACGC
CTTTCCCCTGGAACCCTTCTCGCTGATATGCTTGCTCGCAGCCAAACTAG
AGCAGAGCAAAGAAAGTCTCGAAATTCTCTTTTGCTGCGTGGAGGAGGAA
AACGATTATATTGAGACCCGAGCAATATCAAGTACGCCGTGGAACGCTAT
ACAGGCTCTCCTCGCGAGCGCATGCTTAGTGAGGGGCAATTAGAGGTGAC
CTCTATGGCAGGCATGAAGGCACCAGGAAAAGTATCCATCACCGAGCATT
CTCCCCTACTCTTCCAGCCTGAGCCCTCCCTCGCTCCTTCTTCCATCTCT
TCTCACTCATTAATCGAGCAAAGCGAGAAAACGACTGAGATACCAGGAGC
TTATTTTGCCTCTTACAATGTGCCTTCCGACCGAGAGATATACGACTATT
TGGGTTTCGGATTAAAGATGGTTCTAGACGCATCCGCGCGCTCATTCAAC
GTGCTGGACCAG

Synonyms

Publications