rna6924, rna6924 (mRNA) Nannochloropsis gaditana

Overview
Namerna6924
Unique Namerna6924
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length309
Alignment locationCM002470.1:22178..23707 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101122g3.5725.mrna
Orig protein idgnl|cribi|Naga_101122g3.5725
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:22178..23707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101122g3gene6690Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23766.1cds6908Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6924rna6924-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6924 ID=rna6924|Name=rna6924|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGGGCCGAAGACCGACCCGCCACGGGCATTTTCATCCTCTACAAGAGCG
CAACGGCCGCTTCGCCCGGGTGGTCGCCTCTGTACTCCTGCGGCGCGCTG
GCTTCCCCCGGGCCCTCATCCATTCCGAAAACAAGATCCTCTCCTTGAAT
GAGTTCTTCGACATCGTTTCCAAGGAAGTGAGCGCTCGGGGGGCCAAGGC
GCGCCAAAGGCTGCAGCACCCGGAGGAAAGGAGGGAGGAGGTCCGAGTAC
AGGACGAGGCAACGGCAGGGGCGGGGGGGAGAAAGGAAGAGCGGAGTGGC
AGCATGTGA
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protein sequence of rna6924

>rna6924-protein ID=rna6924-protein|Name=rna6924|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MPPSATASTPSSSSLPPSLPPSSSPFCLLLHGPRGVGKTTLLAWLAREVT
SFPLPPLFLSFPSGASSVTNDIQEALKSIEEGKEGTGREGGREGGREDMA
RLLLVDGLQSEEMCFDVVAALSNFASSHPSSSSSSSVSTRPSPSSSLSSS
PSNPRPKLVALMALCTSSGSDSSSLTPSSSTSLPSSSLRGSVHAHFGLPV
LTDFEGEIMPTLERMMEEPLVGESTGKEAMKATMRGLEGVVVMSRALGGK
EGRNMLGEMLEHVWV
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mRNA from alignment at CM002470.1:22178..23707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6924 ID=rna6924|Name=rna6924|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp|location=Sequence derived from alignment at CM002470.1:22178..23707- (Nannochloropsis gaditana)
TCCGATGCCCCACTACCATTTGTGCATTTCCTACCCCTTGTACACTTTTT
AATCTCCCCTTCGCTCTCCCTCTTTTCCTCCCTTCTTTCCTTCCTCCCTC
CCTCCATCCCTCCCTCCCGCATTCTCCAGGGCGGGCCCACCTCTCGTGTC
CTGGGAAGATTTTGAAAGGGCACTGGCTGAAGGTGAGAGAGTCTCGGCAA
CTCACATTCTTCTTTCGTGTAGTCACATTCTCTTTCTTCGCTCACGGCGG
CCTCTCTCCCTCTTTTTCTTGCTTCCTCCCTCTTTCCTCCCTCCCTCCTT
TCATCACGCGCCCCAACAGTCTCACCCATCAATACCACCAGCACCAGCTC
TGCCGCTCCCTCATTCCTTCCTCGCTTCCTCCCTCCCCCTATTCCGTCCT
GGGGAATCCTCGACCCTAGTGTGACCCATGCCTCCGTCCGCCACCGCCTC
CACTCCCTCCTCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCGTCTC
CCTTTTGTCTGCTCTTGCACGGTCCCAGAGGGGTGGGAAAGACCACGTTG
CTAGCCTGGCTTGCCCGGGAGGTCACCTCCTTCCCCCTCCCTCCCCTCTT
CCTCTCCTTCCCCTCGGGTGCTTCTTCCGTGACCAACGACATCCAGGAGG
CACTCAAGTCCATCGAAGAGGGGAAGGAGGGAACAGGGAGGGAGGGAGGG
AGGGAGGGGGGGAGGGAGGACATGGCACGCCTCCTTTTGGTCGACGGCCT
TCAGAGCGAGGAGATGTGCTTCGACGTCGTTGCCGCTCTTTCCAACTTCG
CCTCCTCACATCCCTCCTCGTCGTCTTCTTCCTCTGTCAGCACCCGACCC
TCCCCCTCCTCCTCCCTCTCTTCCTCACCTTCGAATCCACGACCTAAGCT
GGTAGCTTTGATGGCCCTCTGCACCTCATCTGGCTCGGATTCTTCCTCCC
TCACACCTTCCTCATCTACCTCGCTCCCGTCCTCCTCTCTGCGCGGTTCC
GTGCACGCCCACTTCGGTCTGCCTGTTTTGACGGATTTCGAAGGCGAGAT
CATGCCTACGCTTGAAAGAATGATGGAGGAACCATTAGTGGGGGAAAGTA
CAGGAAAAGAGGCGATGAAAGCCACGATGCGGGGGCTAGAGGGAGTGGTG
GTGATGTCTAGGGCCCTCGGAGGAAAGGAAGGGAGAAACATGCTGGGCGA
GATGCTGGAACACGTCTGGGTGTAAAGGAGGAAACGTGAGTGAGGAGGAG
GCATGCTCCTGAAAAAGAGGAGCAGGCGTCGTCGGGAGGGAGTGGAGGGG
TTATGTAGTGCGTCGATATAGTGGTTCTACACCTTTTCCTATGGGACTGG
CAGGCTTCCCTTTCATCGACGCCACGAAGAGCACCCAGGGCGCGAGATAT
GGTGGTCGAGAGAAGGACCAGCCGAAAGCTTGCAATGTCGGTAATCAACT
AGAAATGCTCGACGATGATGACGTTGCCTCTTGCCACACTTGGGGTTTTC
CACATGCGAATGTAACGCAACAACAAATCC
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Coding sequence (CDS) from alignment at CM002470.1:22178..23707-

>rna6924 ID=rna6924|Name=rna6924|organism=Nannochloropsis gaditana|type=CDS|length=798bp|location=Sequence derived from alignment at CM002470.1:22178..23707- (Nannochloropsis gaditana)
ATGCCTCCGTCCGCCACCGCCTCCACTCCCTCCTCGTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTCGTCTCCCTTTTGTCTGCTCTTGCACGGTCCCA
GAGGGGTGGGAAAGACCACGTTGCTAGCCTGGCTTGCCCGGGAGGTCACC
TCCTTCCCCCTCCCTCCCCTCTTCCTCTCCTTCCCCTCGGGTGCTTCTTC
CGTGACCAACGACATCCAGGAGGCACTCAAGTCCATCGAAGAGGGGAAGG
AGGGAACAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGGACATGGCA
CGCCTCCTTTTGGTCGACGGCCTTCAGAGCGAGGAGATGTGCTTCGACGT
CGTTGCCGCTCTTTCCAACTTCGCCTCCTCACATCCCTCCTCGTCGTCTT
CTTCCTCTGTCAGCACCCGACCCTCCCCCTCCTCCTCCCTCTCTTCCTCA
CCTTCGAATCCACGACCTAAGCTGGTAGCTTTGATGGCCCTCTGCACCTC
ATCTGGCTCGGATTCTTCCTCCCTCACACCTTCCTCATCTACCTCGCTCC
CGTCCTCCTCTCTGCGCGGTTCCGTGCACGCCCACTTCGGTCTGCCTGTT
TTGACGGATTTCGAAGGCGAGATCATGCCTACGCTTGAAAGAATGATGGA
GGAACCATTAGTGGGGGAAAGTACAGGAAAAGAGGCGATGAAAGCCACGA
TGCGGGGGCTAGAGGGAGTGGTGGTGATGTCTAGGGCCCTCGGAGGAAAG
GAAGGGAGAAACATGCTGGGCGAGATGCTGGAACACGTCTGGGTGTAA
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Synonyms
Publications