rna6923, rna6923 (mRNA) Nannochloropsis gaditana

Overview
Namerna6923
Unique Namerna6923
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationCM002470.1:20417..21227 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101122g1.5724.mrna
Orig protein idgnl|cribi|Naga_101122g1.5724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:20417..21227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101122g1gene6689Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6923rna6923-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23765.1cds6907Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6923 ID=rna6923|Name=rna6923|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
AAAAAAAAATGCGGGGTGCCACATGTTGGCAATGAAATGTTGTCGTTCAC
GTATGCGATTCTCCCTCGCTACGCTGGAGCGATAGCGGTCTTATTGCATC
TCTTGCGGAGTGATGTCAAGATAAAGAAGAACCCGGCCATGCTTTCTGAA
CATTATTGCTGACACCGCCGCTCTTTTCTTAGTAAACATACACGCGACCT
CCACCCGCTTGACGGCTATCATTGGAACTAGAGAAACTTTCTCAGTTTTC
AATACCTTCTTTGTCTGAGGTGATATTTTCGACCTCGCAACGTGGATTTG
GAGTACGGCGGGCCTGGGTGGAGTATTAGATCCTACGAGTGAAGTTCTTT
TATGTGTTCTTGATCCTCCCCGACGGGACCGGCTTCTATCACTTTCACGG
CCGTACATTTTTTGTGAATATTTTAGTACTACTAAATGTCCTGTCTGCTC
TCTGCATGTACCATAGGTTTCTAAATCATTATAGCTTATCTATGACGAGA
AACTGTTGCCTAGTAGAAGATCCCTTTTATGTGCCGGTAAGAAAACGGAT
GCTCCACCAACACCTGTATTGGATAACGCGAGGATAACGTATAAACGAAC
AATGAAAGACCCTGGTGAAACCTGTTGAAAAGACTGTATCATCGATTTGA
TCTTCCTGAAAAATTCGAAAATGCAAAACAAAAGCGGATGGCTTTCTGTC
AGCATTATGGGGAACGTACTTCATTTGATTACCTTGAATTACGTGCTTTG
CGGCGAGTTTTCCATACAATAAGAATCACAACATTCGACGTCTTCTCCGC
CATTGACATAGACGCCGGATATGGTCAAGGACGTCGAATGAACGCTGTCT
TGATCGTGATGTCATGCTTTAGAATTCCCCCCTACCCATCCTCCCTCAGC
ATGGTCCGGCTTCAACACGTGGCGGTACCTTTCCCATCATTTGCAGCATT
GGCGACGTCCCATTCCTCTCCGCAACTCGTTGCTCGATCATCCGCCCTTG
TCCTCCATGCCTCTTCCCTACTTTGCCCCTTCTCTGGCACCAGCCACCGT
CCCTCCTGCCTTTCTGGCCCTCAGACCATCCCTCGTCTGCCCCATCCACC
CTCCCTCCCTCCTTCCCGTCCTCAACCTCCCTTGGAGGAGTCCTCGATGT
TTTGCTCGAGCAGGACGGAGGCGATAAAGCCGACGAAGAACATTAGGTCT
ACATACCATACATGCGGCCTCCCCGCCTCATGCGCCTCCACCAGCAGCTC
TTCGGTGATGAGATAGAGCAGCGCGGCCACGCCGAAGGCCAAAAGCGCAA
CCTGG
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protein sequence of rna6923

>rna6923-protein ID=rna6923-protein|Name=rna6923|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MGRRPTRHGHFHPLQERNGRFARVVASVLLRRAGFPRALIHSENKILSLN
EFFDIVSKEVSARGAKARQRLQHPEERREEVRVQDEATAGAGGRKEERSG
SM
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mRNA from alignment at CM002470.1:20417..21227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6923 ID=rna6923|Name=rna6923|organism=Nannochloropsis gaditana|type=mRNA|length=811bp|location=Sequence derived from alignment at CM002470.1:20417..21227+ (Nannochloropsis gaditana)
ATGGGCCGAAGACCGACCCGCCACGGGCATTTTCATCCTCTACAAGAGCG
TCCTGGAattcctccaccctttccACGACGGTAGGTGGGGCTTTAGGCGC
TTGTTCCCGGTGTGAAGCCCACCCCCTGGCGTATCTCTCGGGTCATGAAT
GCGTCTTGGGTGCGGGCTCGCCCCCGGGAAGGAGACCTGCGGGGTTCACG
ATTGCCTTGCTTTTCTTCACCTGAAAACTCACgcttctcttctttttctc
cctccctcctttccctccctcctttctttcgctccctcctttcccttcct
ccaggcaaCGGCCGCTTCGCCCGGGTGGTCGCCTCTGTACTCCTGCGGCG
CGCTGGCTTCCCCCGGGCCCTCATCCATTCCGAAAACAAGATCCTCTCCT
TGAATGAGGTGAGGGCaagcgatggaggaaggagggaggaaggagggtgg
ggggttAGTAAGGCATCGGAGGGAAGTGTGTGtagcggggagggaaggag
gaagggttgatCTCAACCGGGGTCTCCTTAAGGAAGAAGCTCCGGACGAG
CTTTCTGAGCGATCCTTCCCGTGGCCCTTGCGAGGTCCTcacgccatttc
ctcccctcccctcttctctctcccgtcggtcccctgcctccctcctcccc
ggcagTTCTTCGACATCGTTTCCAAGGAAGTGAGCGCTCGGGGGGCCAAG
GCGCGCCAAAGGCTGCAGCacccggaggaaaggagggaggaggtccgaGT
ACAGGACGAGGCAAcggcaggggcgggggggagaaaggaagagcggagTG
GCAGCATGTGA
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Coding sequence (CDS) from alignment at CM002470.1:20417..21227+

>rna6923 ID=rna6923|Name=rna6923|organism=Nannochloropsis gaditana|type=CDS|length=927bp|location=Sequence derived from alignment at CM002470.1:20417..21227+ (Nannochloropsis gaditana)
ATGGGCCGAAGACCGACCCGCCACGGGCATTTTCATCCTCTACAAGAGCg
caaCGGCCGCTTCGCCCGGGTGGTCGCCTCTGTACTCCTGCGGCGCGCTG
GCTTCCCCCGGGCCCTCATCCATTCCGAAAACAAGATCCTCTCCTTGAAT
GAGTTCTTCGACATCGTTTCCAAGGAAGTGAGCGCTCGGGGGGCCAAGGC
GCGCCAAAGGCTGCAGCacccggaggaaaggagggaggaggtccgaGTAC
AGGACGAGGCAAcggcaggggcgggggggagaaaggaagagcggagTGGC
AGCATGTGAATGGGCCGAAGACCGACCCGCCACGGGCATTTTCATCCTCT
ACAAGAGCgcaaCGGCCGCTTCGCCCGGGTGGTCGCCTCTGTACTCCTGC
GGCGCGCTGGCTTCCCCCGGGCCCTCATCCATTCCGAAAACAAGATCCTC
TCCTTGAATGAGTTCTTCGACATCGTTTCCAAGGAAGTGAGCGCTCGGGG
GGCCAAGGCGCGCCAAAGGCTGCAGCacccggaggaaaggagggaggagg
tccgaGTACAGGACGAGGCAAcggcaggggcgggggggagaaaggaagag
cggagTGGCAGCATGTGAATGGGCCGAAGACCGACCCGCCACGGGCATTT
TCATCCTCTACAAGAGCgcaaCGGCCGCTTCGCCCGGGTGGTCGCCTCTG
TACTCCTGCGGCGCGCTGGCTTCCCCCGGGCCCTCATCCATTCCGAAAAC
AAGATCCTCTCCTTGAATGAGTTCTTCGACATCGTTTCCAAGGAAGTGAG
CGCTCGGGGGGCCAAGGCGCGCCAAAGGCTGCAGCacccggaggaaagga
gggaggaggtccgaGTACAGGACGAGGCAAcggcaggggcgggggggaga
aaggaagagcggagTGGCAGCATGTGA
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Synonyms
Publications