rna6911, rna6911 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6911
Unique Name	rna6911
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1131
Alignment location	CM002469.1:779631..781784 -

Link to JBrowse

Properties


Property Name	Value
Product	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II
Orig transcript id	gnl\|cribi\|Naga_100330g2.4045.mrna
Orig protein id	gnl\|cribi\|Naga_100330g2.4045
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:779631..781784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100330g2	gene6681	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6911	rna6911-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23780.1	cds6895	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:779631..781784-
coding sequence from alignment at CM002469.1:779631..781784-

mRNA sequence

>rna6911 ID=rna6911|Name=rna6911|organism=Nannochloropsis gaditana|type=mRNA|length=1131bp
ATGCCTCCATCTTCTTCCCGTCGCCGTCAGCCGTCCCTGAGTACCTTAGC
CACCACTGCCACGACCATCCTGCTTTCAACGACGGCGACAGCATCGCCTC
CAGTGCGTACCATGGCCCGAGCATCGTTGGCCTTCACAAGTCCTCTCCAT
GCATTGCCTAGATGTATTAAGAACGCCCATCTCCATTCTTCTCCGTTCCA
TCTTCCTTCTCAGCATGCACGCTCTGACTTGCTCCGCCGGCATGCTTACG
CGAAAGGGCGACCTAGCCTTGACGACGTGGAACGACTCTCGCACGGTCAG
GCGGCAAAAAAGCGCGGCACAGGCTCCCGAAATATTTGTCATCGTCTCAA
TGAGATGGAGCGCAAAGAGTTTGACCTGGCCAAGAAGATGGGGTTCGTCC
AGCTACGGGGCACGGGCTACCGAAGGGAACGGAAAGGGAGCCCGCTGGCC
AATATACACAGGCAGCTCTGCGATGCCCTCGGCAGGCCCTGCATCGAGGT
ACACCGAGGTCTTGGGACGGATGCTGTCGATGAGGTGGTGGTCGACCTCT
CGCCGTACCGACCGGTTCAGCCCGTGGAGCTGGACTCGGCCTGGGAGGTG
TGCGTCGCCTTGGAAGAGGAGTTCCTGTCAGCAGCAGCGTCTGCCGTCTC
CCAAGAAGATGGCACAGCAAATGCTTCATCACTTGGCGAGCAAGAGGGTT
CTGAGGTGCCGTCGTTGCGTGCAAAGTGGGAGAGGATGCGGGAGAGTTTC
GAAGAGGAAGATTGGGAGAAAAAGCCGATATGGGAGCTCCCGGTGCTTGC
TTACGTCTATAACTGTACGGGGGACAGGGGCTTGGCGAAGAAAGGGCTAG
AGCGTAAGAAAGACGATAGTTGTCCAGATTTGAGTCCCGTTTGTATGGAA
GATAGAACAATAGCTGAGGCCGAGCTCTTGAAGCTTTTGTCCGCTGTACT
TGTCCTTGAGCCTGGCAGAAGCACGTTGCAGGGTAGAGTCGTACGCTCAT
TGGTCGTTCTGCTCATTCAAACGGATGGCACATCGTGTGTGAATGGGAAG
CAGAGGAATGAGGTTGAGAAGACATGGCCCTGCGTAAGTGGCGCGATTGC
TGTAAAGTGCCCGCCCGAAGGGTCGATCTGA

protein sequence of rna6911

>rna6911-protein ID=rna6911-protein|Name=rna6911|organism=Nannochloropsis gaditana|type=polypeptide|length=561bp
MIALRIRQKDVLAATSMVPVRISSFFCLGPSSCIHHSTLPARPLRGYQVA
GRFPCARKLRICIAYSSRRISTHTTLYSMGEGYMGTLGHGDFQDRTTLTP
IDALAPYQIKDFAAGWAHTAVVSSCGRLLLFGRPHDVRKALSLRHMWQSL
PFLVRIHQAMKRFFDSPRKGSAAFLREDVLLSPRAFPLPEGERPVRVACS
GALTAIIVASGRVYCMGQNTFGQCGVGGTVLIPGVGGSGGREGERPTPQK
MAAADVANVWTAMVPVQGLDEEELEESEVGESGEKGMRRVRDPVVDIALG
FQHAVCCTASGRAFAWGKGERGQLGNGVAVNHNAACRVDLPEGTRVVKVA
SGFNHAAALAEGGMVWIWGKWQGLGRRSEGTGKGSELYEDQLLPREVELP
GGVDGSVEDVGCGHFHTSVLLRGEGTGAGAWRLFMFGMRSHIRSMEPKLT
PVSLPEVNLKGSGEVRWRFGTGGGMAHTLLECVDDEGVLGVYKAEFQGEW
TQFVPVCSQWEAKGEGEEAGGGGADEDSEKGRKPRRQRRMLRYGEGLIHR
LALMKEEDETK

mRNA from alignment at CM002469.1:779631..781784-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6911 ID=rna6911|Name=rna6911|organism=Nannochloropsis gaditana|type=mRNA|length=2154bp|location=Sequence derived from alignment at CM002469.1:779631..781784- (Nannochloropsis gaditana)
TTACCAAAAAAGATAAGCACTTTCTTTGCCCATCGCATTCGTCTCAACAC
GAGCTTATGCTAACCGATATCCTCCGACAACTTATGATTGTCGTCGTGTC
AAATTACCGGAATAGAATGCTTTTTTATTGCAATGTTTCCTTTGCCCATG
ACCTCCCCACCCACAGCATTGGTCGTGTCTACTTATTTCGCACGTCGACA
GGCTTTTTCGACGTACAGCGATGATTGCACTCAGAATCAGACAGAAGGAC
GTGCTCGCAGCAACTTCGATGGTGCCTGTGAGAATCTCATCATTCTTTTG
CCTCGGGCCTTCATCATGCATTCATCACTCTACTCTTCCAGCCCGCCCGC
TCAGGGGTTATCAAGTCGCTGGACGGTTTCCGTGTGCGCGGAAATTGAGA
ATATGCATCGCATATTCGTCAAGGAGAATTTCCACCCATACGACCCTGTA
CTCCATGGGCGAGGTGTGTGCATGTTTTTCTCGCTTCACAGAAGTCCCGG
TAGACCAGGTCCTTTGTGCGTTCACCTTATCCCCATCCCCCTCTTTGTCG
TGACCTCGCAGCACCCTTGCTCAATCAACCATGCTCTCCCTCTAACGACT
CCTGGAGATCGACACACGTAGCCTATGCGGGTTGTACGTGTCCCCCGCCA
CTCCCATCATGCCGACTCTTTCTTACTGTGGATCCTCCCCACCATTCGGT
TCAGGGCTACATGGGGACCTTGGGCCACGGCGATTTCCAAGACAGAACCA
CCTTGACGCCTATCGACGCCCTTGCTCCATACCAAATCAAGGATTTCGCC
GCGGGATGGGCGCACACGGCGGTCGTCAGCAGCTGCGGGCGCCTCCTCCT
CTTCGGACGCCCCCACGACGTACGCAAAGCCCTCAGTCTCCGACACATGT
GGCAGTCCCTCCCCTTCCTCGTCCGAATCCACCAGGCGATGAAGCGGTTT
TTTGACAGCCCCAGGAAGGGCTCGGCCGCCTTCCTCCGAGAAGATGTACT
GCTCTCTCCCCGCGCCTTTCCCCTGCCCGAGGGAGAGCGCCCGGTGAGAG
TCGCCTGTTCGGGCGCCCTCACGGCGATTATCGTGGCCAGTGGGCGAGTC
TACTGCATGGGCCAGAACACGTTTGGCCAGTGTGGTGTGGGAGGGACTGT
GCTGATCCCGGGGGTCGGGGGGTCGGGAGGGCGGGAGGGAGAGCGTCCAA
CGCCGCAGAAGATGGCAGCGGCCGACGTAGCGAACGTGTGGACCGCGATG
GTGCCTGTGCAGGGACTGGACGAGGAGGAATTGGAGGAGTCAGAGGTTGG
AGAAAGCGGGGAGAAGGGCATGCGGCGCGTTAGAGATCCGGTGGTGGACA
TAGCCCTAGGCTTTCAGCATGCGGTGTGCTGCACCGCCTCGGGGAGGGCC
TTCGCCTGGGGCAAGGGGGAGAGAGGACAGTTAGGCAATGGCGTGGCCGT
CAATCACAATGCGGCCTGTCGCGTGGACCTTCCGGAGGGAACCAGGGTGG
TCAAGGTGGCGTCGGGCTTCAACCATGCGGCGGCTCTGGCGGAGGGGGGG
ATGGTGTGGATCTGGGGCAAGTGGCAAGGCCTGGGGCGTCGGAGCGAGGG
CACCGGGAAGGGGTCCGAGCTCTATGAGGACCAGCTGCTGCCGCGGGAAG
TGGAGCTGCCGGGAGGGGTCGATGGGTCAGTGGAGGACGTGGGGTGCGGG
CATTTCCACACGAGCGTGTTGCTGCGAGGCGAGGGAACGGGGGCAGGGGC
CTGGCGGCTGTTCATGTTTGGAATGCGGTCGCATATCCGATCGATGGAGC
CCAAGCTGACACCCGTATCTTTGCCGGAGGTAAATTTGAAGGGAAGCGGT
GAAGTGCGATGGCGGTTTGGGACGGGGGGAGGGATGGCGCACACGCTCTT
GGAATGCGTAGATGACGAAGGGGTCCTAGGCGTGTACAAGGCGGAATTTC
AGGGGGAATGGACGCAATTTGTGCCGGTGTGCTCTCAATGGGAGGCGAAG
GGCGAGGGCGAAGAGGCGGGAGGAGGAGGAGCTGACGAGGACAGCGAGAA
AGGGAGGAAGCCGCGGAGGCAAAGAAGAATGCTCCGGTACGGGGAGGGAT
TGATACATCGACTTGCGCTGATGAAAGAGGAAGATGAAACAAAGTAACAA
ACCG

Coding sequence (CDS) from alignment at CM002469.1:779631..781784-

>rna6911 ID=rna6911|Name=rna6911|organism=Nannochloropsis gaditana|type=CDS|length=3372bp|location=Sequence derived from alignment at CM002469.1:779631..781784- (Nannochloropsis gaditana)
GGCTACATGGGGACCTTGGGCCACGGCGATTTCCAAGACAGAACCACCTT
GACGCCTATCGACGCCCTTGCTCCATACCAAATCAAGGATTTCGCCGCGG
GATGGGCGCACACGGCGGTCGTCAGCAGCTGCGGGCGCCTCCTCCTCTTC
GGACGCCCCCACGACGTACGCAAAGCCCTCAGTCTCCGACACATGTGGCA
GTCCCTCCCCTTCCTCGTCCGAATCCACCAGGCGATGAAGCGGTTTTTTG
ACAGCCCCAGGAAGGGCTCGGCCGCCTTCCTCCGAGAAGATGTACTGCTC
TCTCCCCGCGCCTTTCCCCTGCCCGAGGGAGAGCGCCCGGTGAGAGTCGC
CTGTTCGGGCGCCCTCACGGCGATTATCGTGGCCAGTGGGCGAGTCTACT
GCATGGGCCAGAACACGTTTGGCCAGTGTGGTGTGGGAGGGACTGTGCTG
ATCCCGGGGGTCGGGGGGTCGGGAGGGCGGGAGGGAGAGCGTCCAACGCC
GCAGAAGATGGCAGCGGCCGACGTAGCGAACGTGTGGACCGCGATGGTGC
CTGTGCAGGGACTGGACGAGGAGGAATTGGAGGAGTCAGAGGTTGGAGAA
AGCGGGGAGAAGGGCATGCGGCGCGTTAGAGATCCGGTGGTGGACATAGC
CCTAGGCTTTCAGCATGCGGTGTGCTGCACCGCCTCGGGGAGGGCCTTCG
CCTGGGGCAAGGGGGAGAGAGGACAGTTAGGCAATGGCGTGGCCGTCAAT
CACAATGCGGCCTGTCGCGTGGACCTTCCGGAGGGAACCAGGGTGGTCAA
GGTGGCGTCGGGCTTCAACCATGCGGCGGCTCTGGCGGAGGGGGGGATGG
TGTGGATCTGGGGCAAGTGGCAAGGCCTGGGGCGTCGGAGCGAGGGCACC
GGGAAGGGGTCCGAGCTCTATGAGGACCAGCTGCTGCCGCGGGAAGTGGA
GCTGCCGGGAGGGGTCGATGGGTCAGTGGAGGACGTGGGGTGCGGGCATT
TCCACACGAGCGTGTTGCTGCGAGGCGAGGGAACGGGGGCAGGGGCCTGG
CGGCTGTTCATGTTTGGAATGCGGTCGCATATCCGATCGATGGAGCCCAA
GCTGACACCCGTATCTTTGCCGGAGGTAAATTTGAAGGGAAGCGGTGAAG
TGCGATGGCGGTTTGGGACGGGGGGAGGGATGGCGCACACGCTCTTGGAA
TGCGTAGATGACGAAGGGGTCCTAGGCGTGTACAAGGCGGAATTTCAGGG
GGAATGGACGCAATTTGTGCCGGTGTGCTCTCAATGGGAGGCGAAGGGCG
AGGGCGAAGAGGCGGGAGGAGGAGGAGCTGACGAGGACAGCGAGAAAGGG
AGGAAGCCGCGGAGGCAAAGAAGAATGCTCCGGTACGGGGAGGGATTGAT
ACATCGACTTGCGCTGATGAAAGAGGAAGATGAAACAAAGTAAATGATTG
CACTCAGAATCAGACAGAAGGACGTGCTCGCAGCAACTTCGATGGTGCCT
GTGAGAATCTCATCATTCTTTTGCCTCGGGCCTTCATCATGCATTCATCA
CTCTACTCTTCCAGCCCGCCCGCTCAGGGGTTATCAAGTCGCTGGACGGT
TTCCGTGTGCGCGGAAATTGAGAATATGCATCGCATATTCGTCAAGGAGA
ATTTCCACCCATACGACCCTGTACTCCATGGGCGAGGGCTACATGGGGAC
CTTGGGCCACGGCGATTTCCAAGACAGAACCACCTTGACGCCTATCGACG
CCCTTGCTCCATACCAAATCAAGGATTTCGCCGCGGGATGGGCGCACACG
GCGGTCGTCAGCAGCTGCGGGCGCCTCCTCCTCTTCGGACGCCCCCACGA
CGTACGCAAAGCCCTCAGTCTCCGACACATGTGGCAGTCCCTCCCCTTCC
TCGTCCGAATCCACCAGGCGATGAAGCGGTTTTTTGACAGCCCCAGGAAG
GGCTCGGCCGCCTTCCTCCGAGAAGATGTACTGCTCTCTCCCCGCGCCTT
TCCCCTGCCCGAGGGAGAGCGCCCGGTGAGAGTCGCCTGTTCGGGCGCCC
TCACGGCGATTATCGTGGCCAGTGGGCGAGTCTACTGCATGGGCCAGAAC
ACGTTTGGCCAGTGTGGTGTGGGAGGGACTGTGCTGATCCCGGGGGTCGG
GGGGTCGGGAGGGCGGGAGGGAGAGCGTCCAACGCCGCAGAAGATGGCAG
CGGCCGACGTAGCGAACGTGTGGACCGCGATGGTGCCTGTGCAGGGACTG
GACGAGGAGGAATTGGAGGAGTCAGAGGTTGGAGAAAGCGGGGAGAAGGG
CATGCGGCGCGTTAGAGATCCGGTGGTGGACATAGCCCTAGGCTTTCAGC
ATGCGGTGTGCTGCACCGCCTCGGGGAGGGCCTTCGCCTGGGGCAAGGGG
GAGAGAGGACAGTTAGGCAATGGCGTGGCCGTCAATCACAATGCGGCCTG
TCGCGTGGACCTTCCGGAGGGAACCAGGGTGGTCAAGGTGGCGTCGGGCT
TCAACCATGCGGCGGCTCTGGCGGAGGGGGGGATGGTGTGGATCTGGGGC
AAGTGGCAAGGCCTGGGGCGTCGGAGCGAGGGCACCGGGAAGGGGTCCGA
GCTCTATGAGGACCAGCTGCTGCCGCGGGAAGTGGAGCTGCCGGGAGGGG
TCGATGGGTCAGTGGAGGACGTGGGGTGCGGGCATTTCCACACGAGCGTG
TTGCTGCGAGGCGAGGGAACGGGGGCAGGGGCCTGGCGGCTGTTCATGTT
TGGAATGCGGTCGCATATCCGATCGATGGAGCCCAAGCTGACACCCGTAT
CTTTGCCGGAGGTAAATTTGAAGGGAAGCGGTGAAGTGCGATGGCGGTTT
GGGACGGGGGGAGGGATGGCGCACACGCTCTTGGAATGCGTAGATGACGA
AGGGGTCCTAGGCGTGTACAAGGCGGAATTTCAGGGGGAATGGACGCAAT
TTGTGCCGGTGTGCTCTCAATGGGAGGCGAAGGGCGAGGGCGAAGAGGCG
GGAGGAGGAGGAGCTGACGAGGACAGCGAGAAAGGGAGGAAGCCGCGGAG
GCAAAGAAGAATGCTCCGGTACGGGGAGGGATTGATACATCGACTTGCGC
TGATGAAAGAGGAAGATGAAACAAAGTAAATGATTGCACTCAGAATCAGA
CAGAAGGACGTGCTCGCAGCAACTTCGATGGTGCCTGTGAGAATCTCATC
ATTCTTTTGCCTCGGGCCTTCATCATGCATTCATCACTCTACTCTTCCAG
CCCGCCCGCTCAGGGGTTATCAAGTCGCTGGACGGTTTCCGTGTGCGCGG
AAATTGAGAATATGCATCGCATATTCGTCAAGGAGAATTTCCACCCATAC
GACCCTGTACTCCATGGGCGAG

Synonyms

Publications