rna6910, rna6910 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6910
Unique Name	rna6910
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1378
Alignment location	CM002469.1:777605..778904 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100330g3.4046.mrna
Orig protein id	gnl\|cribi\|Naga_100330g3.4046
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:777605..778904 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100330g3	gene6680	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6910	rna6910-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23781.1	cds6894	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:777605..778904-
coding sequence from alignment at CM002469.1:777605..778904-

mRNA sequence

>rna6910 ID=rna6910|Name=rna6910|organism=Nannochloropsis gaditana|type=mRNA|length=1378bp
CCTGTACCAACACCGTTATAATACATTGTGAAACGCAGGTGGCAGCACGG
AATAACAATGTTGCCGTGGGTTCAGTGTCAGCTAAAACAAGACGCAAGCT
CATCGCCAACTACAACCTGCGACCCAGGGCACCATTCCCCCACGGCTTGT
GTGCCTTTTCAACAAGGGTGGCGTGGGCACGCGGTATGAAGCATGCAAGA
TAGACGTCACGATTGATTTCACTTTTCTTCGATCAAGCCATAGCCCGTTG
TCGCTTCGCTGGTCAACCCCATGGCCAACCATCCCAGCGCTTCACCTCGG
CTCGTCCTGGATTTGAAAAACATACTTGGCGAAAGCCCGGTATGGGATGT
GCAGGCACAGGTATTGCTCTGGATTGACATCGAAGGGAAGACACTCCACA
CATACTCGCCCGCCGACGAGCGCTCAGCCTCTTTCTCGCTTCCTAAACGG
GCGGGCTCTATCGCCCTAAGGGAAGCAGATGACGGGTTGCTTTTTGCGTT
TGAAGATGGTTTTGCCATATTCAACCCCTTTGTGACCGATACGAATGCTG
CAAAGCCTCCGGTGTACATCCCAGACGAGGCATACATTGAGACTGAACCT
TACCGTCAGCACGCCTTGGTGCGTCTGAACGACGGGCGCTGCGACCGACG
GGGTCGCTTTATTGCTGGTGGCTACAATGGGGACGAGGGCGACGCCTCGA
TGAATCGGGAGTGGGAGGCTGACTGTGGTGTGTACGCGGTCGAGGCAGGG
AAGGGGGATGCGAGCTTTGCCGCCAGGGAGCTACTCCCATTCAAGGTACG
CTGCGCGAACTCGATCTGTTTCAGCCCAGACGGGTCTCATCTCTATTTCA
CAGACTCCCCGCATCGGGAGATATGGGTGTTCGACTACGACCAGGCTACC
GGCCGGGTGGTGGTAGACAGCCGTCGAGTCTTTGCCACCGTCCCCCCGCC
AGGGGTACCCGATGGCTCCTGTGTGGACAGCGCGGGCTACCTCTGGAACG
CGGAATTCTTCTCCGGCCGTGTCGTCCGATATTCACCGGAAGGAGAAGTG
GATCGGGTCGTTCAGCTCCCGGTCAGCAGGGTGACTTGCCCGTGTCTGGG
GGGCCGGGATCTGAAGACGCTCTTCCTGACGTCAGCGTCGGTGGGGGTGG
AGGGCAAGGAGGAAGGGGCAGGTGGGCTGTGGGCAATGGAAGTGGAGACG
CCGGGCTTGCCAGAAGGGCGATTTATGGGATGAAGAGGCAGGATTGGCTC
AAGGGAGGGTGGAAATTACGGGGTGGCAGTGCATGGAAAACGCGCTCTGT
GTACAACACTGACGGTGACATCATGAGCTTTATTTATGAGATATAAAAAT
CAAAGAATGTTTTAACAAGCAAGATCGT

protein sequence of rna6910

>rna6910-protein ID=rna6910-protein|Name=rna6910|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MPPSSSRRRQPSLSTLATTATTILLSTTATASPPVRTMARASLAFTSPLH
ALPRCIKNAHLHSSPFHLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQ
AAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLA
NIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEV
CVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESF
EEEDWEKKPIWELPVLAYVYNCTGDRGLAKKGLERKKDDSCPDLSPVCME
DRTIAEAELLKLLSAVLVLEPGRSTLQGRVVRSLVVLLIQTDGTSCVNGK
QRNEVEKTWPCVSGAIAVKCPPEGSI

mRNA from alignment at CM002469.1:777605..778904-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6910 ID=rna6910|Name=rna6910|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp|location=Sequence derived from alignment at CM002469.1:777605..778904- (Nannochloropsis gaditana)
ATGCCTCCATCTTCTTCCCGTCGCCGTCAGCCGTCCCTGAGTACCTTAGC
CACCACTGCCACGACCATCCTGCTTTCAACGACGGCGACAGCATCGCCTC
CAGTGCGTACCATGGCCCGAGCATCGTTGGCCTTCACAAGTCCTCTCCAT
GCATTGCCTAGATGTATTAAGAACGCCCATCTCCATTCTTCTCCGTTCCA
TCTTCCTTCTCAGCATGCACGCTCTGACTTGCTCCGCCGGCATGCTTACG
CGAAAGGGCGACCTAGCCTTGACGACGTGGAACGACTCTCGCACGGTCAG
GCGGCAAAAAAGCGCGGCACAGGCTCCCGAAATATTTGTCATCGTCTCAA
TGAGATGGAGCGCAAAGAGTTTGACCTGGCCAAGAAGATGGGGTTCGTCC
AGCTACGGGGCACGGGCTACCGAAGGGAACGGAAAGGGAGCCCGCTGGCC
AATATACACAGGCAGCTCTGCGATGCCCTCGGCAGGCCCTGCATCGAGGT
ACACCGAGGTCTTGGGACGGATGCTGTCGATGAGGTGGTGGTCGACCTCT
CGCCGTACCGACCGGTTCAGCCCGTGGAGCTGGACTCGGCCTGGGAGGTG
TGCGTCGCCTTGGAAGAGGAGTTCCTGTCAGCAGCAGCGTCTGCCGTCTC
CCAAGAAGATGGCACAGCAAATGCTTCATCACTTGGCGAGCAAGAGGGTT
CTGAGGTGCCGTCGTTGCGTGCAAAGTGGGAGAGGATGCGGGAGAGTTTC
GAAGAGGAAGATTGGGAGAAAAAGCCGATATGGGAGCTCCCGGTGCTTGC
TTACGTCTATAACTGTACGGGGGACAGGGGCTTGGCGAAGAAAGTGGCGC
AAGAGGCCCACGCTCGCCTCACCAAATTGCCGCGCAAGAGGTGAGACGTG
TGCAGGCGAGGACAAGTGACAGGGGCTAGAGCGTAAGAAAGACGATAGTT
GTCCAGATTTGAGTCCCGTTTGTATGGAAGATAGAACAATGTAGCATTTC
ACCATGTCCCTGGGAGCGTGCCATGATAGAAATCATGCGGGAAGGATAAA
GAGGAGAAGGACCTGATGGGGGCCTGCAAGAGCTGAGGCCGAGCTCTTGA
AGCTTTTGTCCGCTGTACTTGTCCTTGAGCCTGGCAGAAGCACGTTGCAG
GGTAGAGTCGTACGCTCATTGGTCGTTCTGCTCATTCAAACGGATGGCAC
ATCGTGTGTGAATGGGAAGCAGAGGAATGAGGTTGAGAAGACATGGCCCT
GCGTAAGTGGCGCGATTGCTGTAAAGTGCCCGCCCGAAGGGTCGATCTGA

Coding sequence (CDS) from alignment at CM002469.1:777605..778904-

>rna6910 ID=rna6910|Name=rna6910|organism=Nannochloropsis gaditana|type=CDS|length=3393bp|location=Sequence derived from alignment at CM002469.1:777605..778904- (Nannochloropsis gaditana)
AGCTGAGGCCGAGCTCTTGAAGCTTTTGTCCGCTGTACTTGTCCTTGAGC
CTGGCAGAAGCACGTTGCAGGGTAGAGTCGTACGCTCATTGGTCGTTCTG
CTCATTCAAACGGATGGCACATCGTGTGTGAATGGGAAGCAGAGGAATGA
GGTTGAGAAGACATGGCCCTGCGTAAGTGGCGCGATTGCTGTAAAGTGCC
CGCCCGAAGGGTCGATCTGAGGGCTAGAGCGTAAGAAAGACGATAGTTGT
CCAGATTTGAGTCCCGTTTGTATGGAAGATAGAACAATATGCCTCCATCT
TCTTCCCGTCGCCGTCAGCCGTCCCTGAGTACCTTAGCCACCACTGCCAC
GACCATCCTGCTTTCAACGACGGCGACAGCATCGCCTCCAGTGCGTACCA
TGGCCCGAGCATCGTTGGCCTTCACAAGTCCTCTCCATGCATTGCCTAGA
TGTATTAAGAACGCCCATCTCCATTCTTCTCCGTTCCATCTTCCTTCTCA
GCATGCACGCTCTGACTTGCTCCGCCGGCATGCTTACGCGAAAGGGCGAC
CTAGCCTTGACGACGTGGAACGACTCTCGCACGGTCAGGCGGCAAAAAAG
CGCGGCACAGGCTCCCGAAATATTTGTCATCGTCTCAATGAGATGGAGCG
CAAAGAGTTTGACCTGGCCAAGAAGATGGGGTTCGTCCAGCTACGGGGCA
CGGGCTACCGAAGGGAACGGAAAGGGAGCCCGCTGGCCAATATACACAGG
CAGCTCTGCGATGCCCTCGGCAGGCCCTGCATCGAGGTACACCGAGGTCT
TGGGACGGATGCTGTCGATGAGGTGGTGGTCGACCTCTCGCCGTACCGAC
CGGTTCAGCCCGTGGAGCTGGACTCGGCCTGGGAGGTGTGCGTCGCCTTG
GAAGAGGAGTTCCTGTCAGCAGCAGCGTCTGCCGTCTCCCAAGAAGATGG
CACAGCAAATGCTTCATCACTTGGCGAGCAAGAGGGTTCTGAGGTGCCGT
CGTTGCGTGCAAAGTGGGAGAGGATGCGGGAGAGTTTCGAAGAGGAAGAT
TGGGAGAAAAAGCCGATATGGGAGCTCCCGGTGCTTGCTTACGTCTATAA
CTGTACGGGGGACAGGGGCTTGGCGAAGAAAAGCTGAGGCCGAGCTCTTG
AAGCTTTTGTCCGCTGTACTTGTCCTTGAGCCTGGCAGAAGCACGTTGCA
GGGTAGAGTCGTACGCTCATTGGTCGTTCTGCTCATTCAAACGGATGGCA
CATCGTGTGTGAATGGGAAGCAGAGGAATGAGGTTGAGAAGACATGGCCC
TGCGTAAGTGGCGCGATTGCTGTAAAGTGCCCGCCCGAAGGGTCGATCTG
AGGGCTAGAGCGTAAGAAAGACGATAGTTGTCCAGATTTGAGTCCCGTTT
GTATGGAAGATAGAACAATATGCCTCCATCTTCTTCCCGTCGCCGTCAGC
CGTCCCTGAGTACCTTAGCCACCACTGCCACGACCATCCTGCTTTCAACG
ACGGCGACAGCATCGCCTCCAGTGCGTACCATGGCCCGAGCATCGTTGGC
CTTCACAAGTCCTCTCCATGCATTGCCTAGATGTATTAAGAACGCCCATC
TCCATTCTTCTCCGTTCCATCTTCCTTCTCAGCATGCACGCTCTGACTTG
CTCCGCCGGCATGCTTACGCGAAAGGGCGACCTAGCCTTGACGACGTGGA
ACGACTCTCGCACGGTCAGGCGGCAAAAAAGCGCGGCACAGGCTCCCGAA
ATATTTGTCATCGTCTCAATGAGATGGAGCGCAAAGAGTTTGACCTGGCC
AAGAAGATGGGGTTCGTCCAGCTACGGGGCACGGGCTACCGAAGGGAACG
GAAAGGGAGCCCGCTGGCCAATATACACAGGCAGCTCTGCGATGCCCTCG
GCAGGCCCTGCATCGAGGTACACCGAGGTCTTGGGACGGATGCTGTCGAT
GAGGTGGTGGTCGACCTCTCGCCGTACCGACCGGTTCAGCCCGTGGAGCT
GGACTCGGCCTGGGAGGTGTGCGTCGCCTTGGAAGAGGAGTTCCTGTCAG
CAGCAGCGTCTGCCGTCTCCCAAGAAGATGGCACAGCAAATGCTTCATCA
CTTGGCGAGCAAGAGGGTTCTGAGGTGCCGTCGTTGCGTGCAAAGTGGGA
GAGGATGCGGGAGAGTTTCGAAGAGGAAGATTGGGAGAAAAAGCCGATAT
GGGAGCTCCCGGTGCTTGCTTACGTCTATAACTGTACGGGGGACAGGGGC
TTGGCGAAGAAAAGCTGAGGCCGAGCTCTTGAAGCTTTTGTCCGCTGTAC
TTGTCCTTGAGCCTGGCAGAAGCACGTTGCAGGGTAGAGTCGTACGCTCA
TTGGTCGTTCTGCTCATTCAAACGGATGGCACATCGTGTGTGAATGGGAA
GCAGAGGAATGAGGTTGAGAAGACATGGCCCTGCGTAAGTGGCGCGATTG
CTGTAAAGTGCCCGCCCGAAGGGTCGATCTGAGGGCTAGAGCGTAAGAAA
GACGATAGTTGTCCAGATTTGAGTCCCGTTTGTATGGAAGATAGAACAAT
ATGCCTCCATCTTCTTCCCGTCGCCGTCAGCCGTCCCTGAGTACCTTAGC
CACCACTGCCACGACCATCCTGCTTTCAACGACGGCGACAGCATCGCCTC
CAGTGCGTACCATGGCCCGAGCATCGTTGGCCTTCACAAGTCCTCTCCAT
GCATTGCCTAGATGTATTAAGAACGCCCATCTCCATTCTTCTCCGTTCCA
TCTTCCTTCTCAGCATGCACGCTCTGACTTGCTCCGCCGGCATGCTTACG
CGAAAGGGCGACCTAGCCTTGACGACGTGGAACGACTCTCGCACGGTCAG
GCGGCAAAAAAGCGCGGCACAGGCTCCCGAAATATTTGTCATCGTCTCAA
TGAGATGGAGCGCAAAGAGTTTGACCTGGCCAAGAAGATGGGGTTCGTCC
AGCTACGGGGCACGGGCTACCGAAGGGAACGGAAAGGGAGCCCGCTGGCC
AATATACACAGGCAGCTCTGCGATGCCCTCGGCAGGCCCTGCATCGAGGT
ACACCGAGGTCTTGGGACGGATGCTGTCGATGAGGTGGTGGTCGACCTCT
CGCCGTACCGACCGGTTCAGCCCGTGGAGCTGGACTCGGCCTGGGAGGTG
TGCGTCGCCTTGGAAGAGGAGTTCCTGTCAGCAGCAGCGTCTGCCGTCTC
CCAAGAAGATGGCACAGCAAATGCTTCATCACTTGGCGAGCAAGAGGGTT
CTGAGGTGCCGTCGTTGCGTGCAAAGTGGGAGAGGATGCGGGAGAGTTTC
GAAGAGGAAGATTGGGAGAAAAAGCCGATATGGGAGCTCCCGGTGCTTGC
TTACGTCTATAACTGTACGGGGGACAGGGGCTTGGCGAAGAAA

Synonyms

Publications