EWM23781.1, cds6894 (CDS) Nannochloropsis gaditana

Overview
NameEWM23781.1
Unique Namecds6894
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:778062..778904 -
Alignment locationCM002469.1:777915..777982 -
Alignment locationCM002469.1:777605..777824 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23781.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100330g3.4046.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:778062..778904 -
CM002469.1supercontigCM002469.1:777915..777982 -
CM002469.1supercontigCM002469.1:777605..777824 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|585105004|gb|EWM23781.1| (hypothetical protein Naga_100330g3 [Nannochloropsis gaditana])

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MPPSSSRRRQPSLSTLATTATTILLSTTATASPPVRTMARASLAFTSPLHALPRCIKNAHLHSSPFHLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESFEEEDWEKKPIWELPVLAYVYNCTGDRGLAKKGLERKKDDSCPDLSPVCMEDRTIAEAELLKLLSAVLVLEPGRSTLQGRVVRSLVVLLIQTDGTSCVNGKQRNEVEKTWPCVSGAIAVKCPPEGSI 376
            MPPSSSRRRQPSLSTLATTATTILLSTTATASPPVRTMARASLAFTSPLHALPRCIKNAHLHSSPFHLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESFEEEDWEKKPIWELPVLAYVYNCTGDRGLAKKGLERKKDDSCPDLSPVCMEDRTIAEAELLKLLSAVLVLEPGRSTLQGRVVRSLVVLLIQTDGTSCVNGKQRNEVEKTWPCVSGAIAVKCPPEGSI
Sbjct:    1 MPPSSSRRRQPSLSTLATTATTILLSTTATASPPVRTMARASLAFTSPLHALPRCIKNAHLHSSPFHLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESFEEEDWEKKPIWELPVLAYVYNCTGDRGLAKKGLERKKDDSCPDLSPVCMEDRTIAEAELLKLLSAVLVLEPGRSTLQGRVVRSLVVLLIQTDGTSCVNGKQRNEVEKTWPCVSGAIAVKCPPEGSI 376          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|298708261|emb|CBJ48324.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 169.859 bits (429), Expect = 3.086e-47
Identity = 94/167 (56.29%), Postives = 108/167 (64.67%), Query Frame = 0
Query:   42 SLAFTSPLHALPRCIKNAHLHSSPFHLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEF 208
            S+A +SP  A+       H H    HL ++  +SD        +GRPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK G+V LRGTGYRRERKGSPL NI RQ CDA   PC  V  G G DAVDEV +D SP R  + V +DS  E   A+  E 
Sbjct:   34 SVAASSPAVAVRATTCKRHHH----HLQAKKKKSD--------RGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSVLTGQGPDAVDEVEIDFSPLRTSREV-MDSLSEQADAVAAEL 187          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|873233417|emb|CEM03333.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 138.658 bits (348), Expect = 6.548e-35
Identity = 83/190 (43.68%), Postives = 109/190 (57.37%), Query Frame = 0
Query:   82 AYAKGRPSLDDVERLSHGQAAKK--RGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYR--PVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESFEEEDWEKKPIWELPVLA 267
            A A GR +LDDVER+S GQAA+K  RGTGSRN+ HRLN+ ERK +D+AK   ++   G+ YRRERKGSPLANI+RQ CDA   PCI + +GLG +  D VVVDLSP R     PV           +++   S  +   S       + S+  +    VP++        E     DW++  IWELP +A
Sbjct:   68 ARAPGRAALDDVERISRGQAARKKRRGTGSRNVPHRLNQEERKLYDIAKGRRYLVTSGSAYRRERKGSPLANIYRQWCDAQATPCINIQKGLGPEGSDLVVVDLSPLRRPASHPV-----------MQQLLESLCSLLSSLGCTVVESPSIAAEPSESVPTI--------EGLPALDWDEWAIWELPEVA 238          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|219118859|ref|XP_002180196.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408453|gb|EEC48387.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.568 bits (327), Expect = 2.504e-30
Identity = 87/207 (42.03%), Postives = 112/207 (54.11%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCI-EVHRGLGTDAVDEVVVDLSPYR-------PVQPVELDSAWEVCVALEEEFLSAAASAVSQ-----EDGTANASSLGEQEGSEVPSLRAKWERMRESFEEEDWEKKPIWELPVLAYVYNCTGDRGLAK 280
            R S DDVERLS GQ +KK+G GSRN+ HRLN+ ER E D A K GFV   GTG RR RKGSPLANIHRQ CDA  +P I       G   +D+V+VDLSP R       P +  +  + W+  +A      +AA+++  Q      D  A+ + L E   ++          M      E W  KPIW+LPV+++     GDR  AK
Sbjct:  199 RISRDDVERLSRGQPSKKKGYGSRNVPHRLNDEERAEMDRAAKKGFVSFAGTGNRRTRKGSPLANIHRQWCDARDKPQILHFKASGGRQPLDQVIVDLSPLRLNGLFDDPSRVDDFLAKWKADIA------TAASNSGMQIYTRTSDVDADENDLDEDIATDYLVTLDHHAVM------EAWATKPIWKLPVVSFAV-FEGDRPRAK 392          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|1210519506|dbj|GAX21630.1| (hypothetical protein FisN_29Hu067 [Fistulifera solaris])

HSP 1 Score: 112.849 bits (281), Expect = 1.077e-25
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMR 247
            RP   DVER+S G+ AK++GTGSR + HRLN  ER  F+ A++ GF+++ G+G+R ER+ +PL N HR  CDA G+ C+ +H+GL + AVD  V+DLSP R   P + +S  E+ +   E           QED      +   Q    +P  R +WE  R
Sbjct:   34 RPDKQDVERISWGKPAKQKGTGSRGVPHRLNSDERVLFEQARRKGFLEVVGSGWRSERREAPLLNTHRSWCDARGQACLRLHKGL-SGAVDTFVLDLSPLR--TPEDFESIAEMILKEVE-----GGKVYFQEDLLETPDAWELQPIYRLPPFRIEWELSR 186          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|551534764|ref|XP_005756230.1| (hypothetical protein EMIHUDRAFT_259824, partial [Emiliania huxleyi CCMP1516] >gi|485603023|gb|EOD03801.1| hypothetical protein EMIHUDRAFT_259824, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 108.612 bits (270), Expect = 7.072e-25
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSA 197
            RP++DDV+R+S G+ AK++GTGSR   HRLN+ ER  +DLA+  GFV++ G+G+R +R  +PL N  R  CDA G   I +H+G     VD+VV+DLSP R  +P E  +A
Sbjct:   44 RPTIDDVDRISWGRPAKRKGTGSRGQPHRLNDAERTLYDLARSKGFVEVAGSGWRSQRADAPLVNTFRSWCDARGVAAIFLHKG---SDVDQVVLDLSPLR--RPAEFANA 149          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|922863718|gb|KOO31105.1| (hypothetical protein Ctob_008662, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 116.701 bits (291), Expect = 7.724e-25
Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGL-GTDAVDEVVVDLSPYR 187
            RP++DDV+R+S G+ AK++GTGSR + HRLN+ ER  +D A++ GFV++ G+G+R ER+ SPL N  R  CDA G P I +H+G  GTD  D+VVVDL+P R
Sbjct:  113 RPTIDDVDRISWGRNAKQKGTGSRGVPHRLNDDERSLYDFARRKGFVEIGGSGWRSERRDSPLVNTFRSWCDARGVPAIYLHKGRDGTD--DQVVVDLAPLR 212          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|224014865|ref|XP_002297094.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968213|gb|EED86562.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-24
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYR 187
            RP+LDD+ERLS+G+ AK+RGTGS+ + HRLN  ER  ++ AK+  ++ ++GTGYRRERKG PL N  RQ CDAL + C+ + R  G D    V++D S  R
Sbjct:    7 RPTLDDIERLSYGKGAKRRGTGSKYVPHRLNADERTLYNFAKEHNYLCIQGTGYRRERKGKPLCNTFRQRCDALNQLCVVIERRRGGDV--RVMIDFSTLR 105          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|551650137|ref|XP_005827852.1| (hypothetical protein GUITHDRAFT_142486 [Guillardia theta CCMP2712] >gi|428171959|gb|EKX40872.1| hypothetical protein GUITHDRAFT_142486 [Guillardia theta CCMP2712])

HSP 1 Score: 112.464 bits (280), Expect = 1.571e-24
Identity = 78/210 (37.14%), Postives = 113/210 (53.81%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAAASAVSQEDGTANASSLGEQEGSEV---------PSLRAKWERMRESFEEED----WEKKPIWELP--VLAYVYNCTGDRGLAKK 281
            RP +DDV+R+S G+ AKK+ TGSR + HRLNE ER  +D+A++ GF+++ G+G+R++R+G+PLAN +R  CDA   P I +++       DEVV+DLSP R V    LD A   C       L  A     +ED       +G  EG  V         P  +A     RE F  E+    +   PI+ LP  V++++      + LAKK
Sbjct:   96 RPDIDDVDRISWGKPAKKKTTGSRGVPHRLNEDERILYDMARRKGFIEVAGSGWRKQRRGAPLANTYRNWCDARAIPVISLYK--DKTGYDEVVLDLSPLR-VPDHFLDIA-TFCA----NSLPGAKMEALEEDEVEEVGGMGGLEGMTVEKETGTYGIPEDKADLVEEREKFLRENLKSAYANDPIYRLPMYVVSWIVQRNEAKELAKK 297          
BLAST of EWM23781.1 vs. NCBI_GenBank
Match: gi|1072237933|gb|OEU22660.1| (hypothetical protein FRACYDRAFT_223555 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.768 bits (273), Expect = 2.035e-24
Identity = 69/188 (36.70%), Postives = 106/188 (56.38%), Query Frame = 0
Query:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEE--EFLSAAASAVSQEDGTANASSLGE-----QEGSEVPSLRAKWERMRESFEEED---WEKKPIWELP 264
            RP ++DVER+S G+ AKK+GTGSR + HRLN  ER  FD A++ GF+Q+ G+G+R +R+ +PL N +R LCDA G+  I +H+      +DE+V DLS  R   P       + C+ L+E  E +   +   +  DG  N   L       ++G  + +         E+ ++ED   WE +PI++LP
Sbjct:    5 RPDVNDVERISWGKPAKKKGTGSRGVPHRLNLDERFLFDKARREGFLQMEGSGWRSQRREAPLLNTYRSLCDARGQASIILHK--RDTGIDELVCDLSTLR--NPKIFHDVAKKCLELQEGGEIVFQGSETDTINDGN-NDEDLSMILSTVEDGGNIEN--------NENLDDEDTGPWETRPIYQLP 179          
The following BLAST results are available for this feature:
BLAST of EWM23781.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105004|gb|EWM23781.1|0.000e+0100.00hypothetical protein Naga_100330g3 [Nannochloropsi... [more]
gi|298708261|emb|CBJ48324.1|3.086e-4756.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|873233417|emb|CEM03333.1|6.548e-3543.68unnamed protein product [Vitrella brassicaformis C... [more]
gi|219118859|ref|XP_002180196.1|2.504e-3042.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519506|dbj|GAX21630.1|1.077e-2540.37hypothetical protein FisN_29Hu067 [Fistulifera sol... [more]
gi|551534764|ref|XP_005756230.1|7.072e-2548.65hypothetical protein EMIHUDRAFT_259824, partial [E... [more]
gi|922863718|gb|KOO31105.1|7.724e-2553.92hypothetical protein Ctob_008662, partial [Chrysoc... [more]
gi|224014865|ref|XP_002297094.1|1.136e-2451.49predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551650137|ref|XP_005827852.1|1.571e-2437.14hypothetical protein GUITHDRAFT_142486 [Guillardia... [more]
gi|1072237933|gb|OEU22660.1|2.035e-2436.70hypothetical protein FRACYDRAFT_223555 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6910rna6910Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications