rna6909, rna6909 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6909
Unique Name	rna6909
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2980
Alignment location	CM002469.1:775992..777579 +

Link to JBrowse

Properties


Property Name	Value
Product	SMP-30/Gluconolaconase/LRE-like region
Orig transcript id	gnl\|cribi\|Naga_100330g4.4047.mrna
Orig protein id	gnl\|cribi\|Naga_100330g4.4047
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:775992..777579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100330g4	gene6679	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6909	rna6909-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23782.1	cds6893	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:775992..777579+
coding sequence from alignment at CM002469.1:775992..777579+

mRNA sequence

>rna6909 ID=rna6909|Name=rna6909|organism=Nannochloropsis gaditana|type=mRNA|length=2980bp
GCAACATTGTTATTCCGTGCTGCCACCTGCGTTTCACAATGTATTATAAC
GGTGTTGGTACAGGAATGAAACGTCTTTTTCTGCACCGGACGAACGGGTT
GATTGCTCGCCTTCCACGCAGCCCTACCTTGACGCCCCCGACCTCCCCTC
TAGCTGCCATGCTGCTCAAGTGTCTCACAATGACAAGTGTGATGTGGTTT
GGTGTCACCGCCAGCGCGGCTCGTCCAAACGTGAATATCGGATCGTCAAG
GAATTCCGGCCACCAAAGTCCTCCTTTGTCACCACTAATGTTCCAGTCCC
CTCTAGTTACTGCGGAGCAGGTGAAGTCTTCCCTAGCTGAAAGTAATAAG
AGTGGAGACTCAAAAGGGCGCAGCATTAAATTCTTAGACTCCTCGTGGCA
TTTGGACAAATCGCGGGACGCCAAGAAGGAATTTTTAGGTAATGAGTCTT
TAATAACGAGTGGTTAAAGAGCATCAACTCGTTTCCTTGAAAGGCTTTCT
TGGCACCTGCTTTTACGATCATACAGGATTTGCTCTAACCTTACTAATCA
CCACCCTAGAGCATCTTTCCGAAATCCCCTTCAATCCACATTGAGTGCCC
ATGCACCCGAATGTTCCCCCTATCCTGCCTTCTCTTTCCTCTTAATCTGC
AGGGGAGCATCTACCGGGCGCTCAATTTTTCGACATTGATGCCATCAGCG
ACACCTCCTCACCCTTCCCCCACATGCTTCCGTCGGCCACCGCCTTCTCG
GAGGCAGTCTCCGCCCTAGGCCTTGAGAATAAGGATGAGATCGTTGTATA
CACCACCCAGAAATGCTTCAGTGCGGCACGCTGTTGGTGGACTTTCAGGG
CTTTTGGGCATGAGAAGGTTTACATCCTGCAGGGGGGCTTGCCGGCTTGG
CAAGCTGCGGGCGGCAAGACGGAGACAGGCCCTGCGCAGGCACGTCCCAG
TCGGCCACCGCGTGGCCTGGTAGAGCAAGGTGGTAATGCTTGGCTGTTGC
AGAAGCAGGGATTCCAAGCAAAGCTCCAGGCAGACCTGGTGTACTCCTGG
CAACAGGTCTTGAAGGTGGTGGAGGGAGAGGAAGCAGAGGGGCAGAAGCA
CCACTGGATCGCGGACGCGCGCGGCCCCCCCCGGTTCAATGCAGATGTGG
ATGAACCTCGTCCTGGCCTTGCGAGAGGGCACATCCCCGGATCCGTCAAC
GTGCCTTTCGACCGAGTGTTCGAGGAGGGAGACTGGACTCGCTTCCGGCG
TCCGGCCGAGGTGGTCGAGGTCTTTGCGGCCCAAGGCGTGGATGTGAGGT
CCTTATCGAAGGAGCGGAAAGTGATCACAACCTGTGGATCGGGTGTGACC
GCGGCGGCGCTTTCCTTCGCCATGGTCCTGGCGGGGGCGGATGTGACAGC
CGTTCCTGTCTTTGATGCATCCTGGGCGGCTTGTACGTTAAGGGGGAGAG
GAAGTGAGGGAGGGAAAGAGCATACGAGAGTAGGGCAGAGCAGTATGAGA
AAGGCCGTGAAGAGATGAGGCCTTGGCTTACTTTTTCCTCTCAGCGTCGT
TGAAGCACGCCTTGTGTTGCTGTTGTCGATTTGATGTTGGGAGTGTCTCT
TCTCATGGTATCCCCGTCCTTTAATTTCCGGCTTTCATCCACCTTTAGGG
GGGCAATTGAAAGGGGTGCCGATTGAGCCACCACCTGAAAATCGACCGTG
AGGCATACAAGACATGAAGATTAAGGAGAGGAAAGTTGGCGATAGCCATG
CTGACACGATGATACTGACTGCTGACTTATTCAGTCTTTCTCATAGGACA
TTTGGAAGCGGAGGACGAGGCAGAAGACCAAGTTAAACAACAAATCTGTG
ATAGATCATCTTCCCATTTTCGGTATCACTTTCAGCCTTTCTATTGCCTG
GAAGGCTTTGCCTTCTGAAGTATCACGTCGCTATTCCATTTCACAACCAG
TGCTGTCAAACATAAATTGTGGGATGAGAATTGGTTGCATTCATTCCTCT
TGAGGACTGACTTTGTTCTTGGGGCTGCGCTTTAGCTGTTAATCAGGATC
CATCTGTCGCCATAGACTTGCCTCACTTATCACTATTCTCCTCATGATAT
CATTTTGGTCCGTGTCCATCATTTACTCACACACTCTTCTACTCCTTGAT
TGTCTCCTTCGTCTCCTTCCATCTCTACCGCTGCCTCTGGCCCCCCGAGT
AGCAGTACCTCCTTGTTCCCGTGTTCACTGCGAACGGCAGTACTTTGACA
AAGAAGCGCCAGGGCTTGCACCTCGTCCTCCTCGATGCTGTCCTCTGCGC
CGTTTGATGCTCCGTGCTGCTTCTGCGGCTTTTCAGACAAATGAAGATCT
GTCAACATCGATATCGAGCGATCTGCGTCCTTCGCATCCGTCAATTCACT
CTCATTCTTATGGTTGTCAGTGCAGTCCTTTGGCAGAGCAGACAGATGGT
AGTAAAACGAAGAGTCGTCTTCGCTTGTCTCAGATGCTCTCTCAAAGTCC
ATGATATTCTCGCACTCGACCTCTCCTTCTTCATCGAACCCGTCTCCATA
CCTGGTACGGTCGCATCGACGATCAGTTACTTCTTCATCTTTTTCCCCGA
CCTTATCCGCCTCTCCATGCTCTCTTACACGCTGCTCCTGTTTCGGCTCT
TCGTGCATACCATTGCTGTTTTGTTCTTTTTGCTGCCTCCCGTCATTTTT
AGGCCTAGATTCCTCCTCATCTATTGACCATGTCACTTTCTCACATTCTG
GGCTTGGCGCTCGCACTGCCTCAGCTCGTAGGGATAGGAGAAACGAAGCC
GAGGGAGAGGTGTTGACAGACGGGGAGTCGGTGGGAGAGGCAAGGCAAAT
CGGCGGCGTGATTTCCTTCATCTCCGTTGCCGTGGCTATCATTGTTGAGT
CAGTTGCCATTCCTTGTCGCATCATATCTTTTATCAATTTTTTATACCGC
GCAATTTTCCTATTTGCCTCCGTCAACAAG

protein sequence of rna6909

>rna6909-protein ID=rna6909-protein|Name=rna6909|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MANHPSASPRLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADE
RSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYI
PDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEA
DCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHRE
IWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGR
VVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGA
GGLWAMEVETPGLPEGRFMG

mRNA from alignment at CM002469.1:775992..777579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6909 ID=rna6909|Name=rna6909|organism=Nannochloropsis gaditana|type=mRNA|length=1588bp|location=Sequence derived from alignment at CM002469.1:775992..777579+ (Nannochloropsis gaditana)
CCTGTACCAACACCGTTATAATACATTGTGAAACGCAGGTGGCAGCACGG
AATAACAATGTTGCCGTGGGTTCAGTGTCAGCTAAAACAAGACGCAAGCT
CATCGCCAACTACAACCTGCGACCCAGGGCACCATTCCCCCACGGCTTGT
GTGCCTTTTCAACAAGGGTGGCGTGGGCACGCGGTATGAAGCATGCAAGA
TAGACGTCACGATTGATTTCACTTTTCTTCGATCAAGCCATAGCCCGTTG
TCGCTTCGCTGGTCAACCCCATGGCCAACCATCCCAGCGCTTCACCTCGG
CTCGTCCTGGTAGGTCTCTGAAATCACACACATGCAGTTTATGCGAGAGG
CATACACCAACTCGACACCGTGTAAAGAACATGATATAAGCGAGATTTGT
TTGCTGACATGAATCTATGCCCATTGCGCTCGTTTCCGGCGAATgcatct
tttcctttctcctcacaaTACCCTCTAGCTCTAAGATTcgttttttttaa
tttctccctccatttgTAGGATTTGAAAAACATACTTGGCGAAAGCCCGG
TATGGGATGTGCAGGCACAGGTATTGCTCTGGATTGACATCGAAGGGAAG
ACACTCCACACATACTCGCCCGCCGACGAGCGCTCAGCCTCTTTCTCGCT
TCCTAAACGGGCGGGCTCTATCGCCCTAAGGGAAGCAGATGACGGGTTGC
TTTTTGCGTTTGAAGATGGTTTTGCCATATTCAACCCCTTTGTGACCGAT
ACGAATGCTGCAAAGCCTCCGGTGTACATCCCAGACGAGGCATACATTGA
GACTGAACCTTACCGTCAGCACGCCTTGGTGCGTCTGAACGACGGGCGCT
GCGACCGACGGGGTCGCTTTATTGCTGGTGGCTACAatggggacgagggc
gacgCCTCGATGAATCGGGAGTGGGAGGCTGACTGTGGTGTGTACGCGGt
cgaggcagggaagggggatgcgAGCTTTGCCGCCAGGGAGCTACTCCCAT
TCAAGGTACGCTGCGCGAACTCGATCTGTTTCAGCCCAGACGGGTCTCAT
CTCTATTTCACAGACTCCCCGCATCGGGAGATATGGGTGTTCGACTACGA
CCAGGCTACCGGCCGGGTGGTGGTAGACAGCCGTCGAGTCTTTGCCACCG
TCCCCCCGCCAGGGGTACCCGATGGCTCCTGTGTGGACAGCGCGGGCTAC
CTCTGGAACGCGGAATTCTTCTCCGGCCGTGTCGTCCGATATTCaccgga
aggagaagtggaTCGGGTCGTTCAGCTCCCGGTCAGCAGGGTGACTTGCC
CGTGTCTGGGGGGCCGGGATCTGAAGACGCTCTTCCTGACGTCAGCGtcg
gtgggggtggagggcaaggaggaaggggcaggtgGGCTGTGGGCAATGGA
AGTGGAGACGCCGGGCTTGCCAGAAGGGCGATTTATGGGATGAAGAGGCA
GGATTGGCtcaagggagggtggaaatTACGGGGTGGCAGTGCATGGAAAA
CGCGCTCTGTGTACAACACTGACGGTGACATCATGAGCTTTATTTATGAG
ATATAAAAATCAAAGAATGTTTTAACAAGCAAGATCGT

Coding sequence (CDS) from alignment at CM002469.1:775992..777579+

>rna6909 ID=rna6909|Name=rna6909|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002469.1:775992..777579+ (Nannochloropsis gaditana)
ATGGCCAACCATCCCAGCGCTTCACCTCGGCTCGTCCTGGATTTGAAAAA
CATACTTGGCGAAAGCCCGGTATGGGATGTGCAGGCACAGGTATTGCTCT
GGATTGACATCGAAGGGAAGACACTCCACACATACTCGCCCGCCGACGAG
CGCTCAGCCTCTTTCTCGCTTCCTAAACGGGCGGGCTCTATCGCCCTAAG
GGAAGCAGATGACGGGTTGCTTTTTGCGTTTGAAGATGGTTTTGCCATAT
TCAACCCCTTTGTGACCGATACGAATGCTGCAAAGCCTCCGGTGTACATC
CCAGACGAGGCATACATTGAGACTGAACCTTACCGTCAGCACGCCTTGGT
GCGTCTGAACGACGGGCGCTGCGACCGACGGGGTCGCTTTATTGCTGGTG
GCTACAatggggacgagggcgacgCCTCGATGAATCGGGAGTGGGAGGCT
GACTGTGGTGTGTACGCGGtcgaggcagggaagggggatgcgAGCTTTGC
CGCCAGGGAGCTACTCCCATTCAAGGTACGCTGCGCGAACTCGATCTGTT
TCAGCCCAGACGGGTCTCATCTCTATTTCACAGACTCCCCGCATCGGGAG
ATATGGGTGTTCGACTACGACCAGGCTACCGGCCGGGTGGTGGTAGACAG
CCGTCGAGTCTTTGCCACCGTCCCCCCGCCAGGGGTACCCGATGGCTCCT
GTGTGGACAGCGCGGGCTACCTCTGGAACGCGGAATTCTTCTCCGGCCGT
GTCGTCCGATATTCaccggaaggagaagtggaTCGGGTCGTTCAGCTCCC
GGTCAGCAGGGTGACTTGCCCGTGTCTGGGGGGCCGGGATCTGAAGACGC
TCTTCCTGACGTCAGCGtcggtgggggtggagggcaaggaggaaggggca
ggtgGGCTGTGGGCAATGGAAGTGGAGACGCCGGGCTTGCCAGAAGGGCG
ATTTATGGGATGAATGGCCAACCATCCCAGCGCTTCACCTCGGCTCGTCC
TGGATTTGAAAAACATACTTGGCGAAAGCCCGGTATGGGATGTGCAGGCA
CAGGTATTGCTCTGGATTGACATCGAAGGGAAGACACTCCACACATACTC
GCCCGCCGACGAGCGCTCAGCCTCTTTCTCGCTTCCTAAACGGGCGGGCT
CTATCGCCCTAAGGGAAGCAGATGACGGGTTGCTTTTTGCGTTTGAAGAT
GGTTTTGCCATATTCAACCCCTTTGTGACCGATACGAATGCTGCAAAGCC
TCCGGTGTACATCCCAGACGAGGCATACATTGAGACTGAACCTTACCGTC
AGCACGCCTTGGTGCGTCTGAACGACGGGCGCTGCGACCGACGGGGTCGC
TTTATTGCTGGTGGCTACAatggggacgagggcgacgCCTCGATGAATCG
GGAGTGGGAGGCTGACTGTGGTGTGTACGCGGtcgaggcagggaaggggg
atgcgAGCTTTGCCGCCAGGGAGCTACTCCCATTCAAGGTACGCTGCGCG
AACTCGATCTGTTTCAGCCCAGACGGGTCTCATCTCTATTTCACAGACTC
CCCGCATCGGGAGATATGGGTGTTCGACTACGACCAGGCTACCGGCCGGG
TGGTGGTAGACAGCCGTCGAGTCTTTGCCACCGTCCCCCCGCCAGGGGTA
CCCGATGGCTCCTGTGTGGACAGCGCGGGCTACCTCTGGAACGCGGAATT
CTTCTCCGGCCGTGTCGTCCGATATTCaccggaaggagaagtggaTCGGG
TCGTTCAGCTCCCGGTCAGCAGGGTGACTTGCCCGTGTCTGGGGGGCCGG
GATCTGAAGACGCTCTTCCTGACGTCAGCGtcggtgggggtggagggcaa
ggaggaaggggcaggtgGGCTGTGGGCAATGGAAGTGGAGACGCCGGGCT
TGCCAGAAGGGCGATTTATGGGATGA

Synonyms

Publications