EWM23782.1, cds6893 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|585105005|gb|EWM23782.1| (SMP-30/Gluconolaconase/LRE-like region [Nannochloropsis gaditana]) HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query: 1 MANHPSASPRLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEVETPGLPEGRFMG 320
MANHPSASPRLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEVETPGLPEGRFMG
Sbjct: 1 MANHPSASPRLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEVETPGLPEGRFMG 320
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|1175383820|ref|WP_081931612.1| (hypothetical protein [Rhizobium sp. YR519]) HSP 1 Score: 201.83 bits (512), Expect = 2.098e-59 Identity = 129/322 (40.06%), Postives = 177/322 (54.97%), Query Frame = 0
Query: 3 NHPSASPRLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERS-ASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPP-GVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVE----GKEEGAGGLWAMEVETPGLPEGRF 318
N + SP +V D +N LGES VWD + L W +I + + ++SP D R+ L +R G+I LR++ GL+ A E GF+ +P T A +E R+ RLNDGR D GRF+ GG + ++ VY ++AG + L + CANSIC+SPDG+ YFTD P R I +DYD +TG V +RR F + G+ DGS VD+ GYLWNA++ G+VVRY+P+G VDR V LPVS TC C GG DL TL++TSA G++ +E AG + A+ G+PE RF
Sbjct: 12 NVSADSPTVVCDCRNNLGESVVWDEKTARLWWANIHEREIWSWSPTDGRAPVGTKLDERVGAIGLRQSA-GLIVALESGFSFHDPETGTTQRI---------ADVE----RELPTTRLNDGRIDPAGRFVCGGMDESSPQKGIS-------AVYVLDAG------GKPKTLINGIHCANSICWSPDGAVFYFTDMPSRRIDAYDYDVSTGEV--SNRRTFVDLRDEVGLADGSTVDADGYLWNAQWGGGKVVRYAPDGSVDREVGLPVSNPTCLCFGGEDLSTLYITSAWFGLDVSARAREPHAGSILALRPGVRGVPEHRF 304
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|1092377062|gb|OHV87497.1| (hypothetical protein ORS3428_21225 [Mesorhizobium sp. ORS3428]) HSP 1 Score: 200.675 bits (509), Expect = 3.063e-59 Identity = 126/318 (39.62%), Postives = 171/318 (53.77%), Query Frame = 0
Query: 10 RLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTN-AAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNG--DEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGK----EEGAGGLWAMEVETPGLPEGRFMG 320
R V ++ LGE PVWDV Q L W+DIEG+ L A + +S P+R S ALRE GL+ A G A F+P + AKP +I A R N+G+CDR+GRF G + E ++ R +AD + VE G G +NS+ +SPD YF D+ R I+ +D+D+ G V +R+FA+ PG PDGS +D+ GYLWNAE+ R+VRY+P+G +DR+V+LPV + T G DLKTLF+TSA + + + AG L A+EVE PGLPE RF G
Sbjct: 5 REVYASRDKLGEVPVWDVAEQALYWVDIEGRRLRRLDHASGKVDEWSFPERICSFALREKG-GLICALASGLAFFDPATGRIDWIAKPEAHI--------------ARNRFNEGKCDRQGRFWVGSMDDRLSEHTGALYRV-DADLTITQVETGIG---------------ISNSLVWSPDEKTFYFADTMDRAIYAYDFDREAG--AVSRKRLFASTKAPGSPDGSTIDAEGYLWNAEWDGWRLVRYAPDGSIDRIVELPVQKPTSCMFGXPDLKTLFVTSAIWDLNAEALASQPMAGSLLAVEVEVPGLPEPRFKG 289
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|1179586978|ref|WP_083355186.1| (hypothetical protein [Mesorhizobium sp. ORS3428]) HSP 1 Score: 200.675 bits (509), Expect = 4.346e-59 Identity = 126/318 (39.62%), Postives = 171/318 (53.77%), Query Frame = 0
Query: 10 RLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTN-AAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNG--DEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGK----EEGAGGLWAMEVETPGLPEGRFMG 320
R V ++ LGE PVWDV Q L W+DIEG+ L A + +S P+R S ALRE GL+ A G A F+P + AKP +I A R N+G+CDR+GRF G + E ++ R +AD + VE G G +NS+ +SPD YF D+ R I+ +D+D+ G V +R+FA+ PG PDGS +D+ GYLWNAE+ R+VRY+P+G +DR+V+LPV + T G DLKTLF+TSA + + + AG L A+EVE PGLPE RF G
Sbjct: 17 REVYASRDKLGEVPVWDVAEQALYWVDIEGRRLRRLDHASGKVDEWSFPERICSFALREKG-GLICALASGLAFFDPATGRIDWIAKPEAHI--------------ARNRFNEGKCDRQGRFWVGSMDDRLSEHTGALYRV-DADLTITQVETGIG---------------ISNSLVWSPDEKTFYFADTMDRAIYAYDFDREAG--AVSRKRLFASTKAPGSPDGSTIDAEGYLWNAEWDGWRLVRYAPDGSIDRIVELPVQKPTSCMFGXPDLKTLFVTSAIWDLNAEALASQPMAGSLLAVEVEVPGLPEPRFKG 301
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|1189876820|ref|WP_085877751.1| (hypothetical protein [Roseisalinus antarcticus] >gi|1188054835|emb|SLN26713.1| L-arabinolactonase [Roseisalinus antarcticus]) HSP 1 Score: 200.29 bits (508), Expect = 4.961e-59 Identity = 127/322 (39.44%), Postives = 179/322 (55.59%), Query Frame = 0
Query: 10 RLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNA----AKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGD--ASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATV-PPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGK----EEGAGGLWAMEVETPGLPEGRFMG 320
RL +N LGE PVWD ++Q L W+DIEG+ L ++LP+R GS ALRE G++ AF GFA ++ +T A A+P +P R NDG+ DRRGRF AG + + AS+ R + D V+ +E G G +N++C+SPD YF D+ +EIWV+D+D A+G + +RRVFAT PG PDGS +D+ G++WNA++ R+VRY+P+G VDRVV LPV + T GG DLKTL++T+A ++ + + AG L A++V GLPE RF G
Sbjct: 5 RLAAKAENTLGEVPVWDPRSQALWWVDIEGRLLQRLHQPSGEIRVWTLPERIGSFALREGG-GVVCAFASGFAFYD---LETGAVDWIARPEADLPGN--------------RFNDGKVDRRGRFWAGTMDDSLSNRTASLYRL-DPDLTVHRMETGVG---------------ISNALCWSPDDRLFYFADTLQQEIWVYDHDAASG--AIGNRRVFATTHDQPGQPDGSTIDAEGFMWNAQWDGWRLVRYAPDGSVDRVVDLPVQKPTSCMFGGTDLKTLYVTTAIWDLDQRTLADQPWAGSLLALDVGVAGLPETRFAG 290
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|852029449|ref|WP_048260035.1| (gluconolaconase [Pectobacterium carotovorum] >gi|848442594|gb|KML67223.1| gluconolaconase [Pectobacterium carotovorum subsp. carotovorum UGC32]) HSP 1 Score: 197.208 bits (500), Expect = 8.553e-58 Identity = 117/312 (37.50%), Postives = 165/312 (52.88%), Query Frame = 0
Query: 10 RLVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFKVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEVET-PGLPEGRFMG 320
++ +D KN+LGE P+W + L W +I GK L Y P + +++P+R GS L + +D LL E A FN T V P + ET R+NDGRCDR G ++ G + E S+ + + VE R LP V ANS+CFSPDG +Y+ DS + I DY +D++R+FA V G PDGSC+D+ G+LWNAE+ RVVRY+P+G VD V+ LP + TCP +GG + TL+ TSA VG+ ++ G L+ ++ + GLPE RF G
Sbjct: 3 KITVDAKNLLGECPLWCEHTRRLFWTNIVGKELLAYHPESGATQRWTMPERLGSFGLTQTEDILLLGLESRLAFFN---LQTEVLSNIVLSPGSS--ET---------RINDGRCDRDGNYVFGTMHEGEPPQSVGAFYRFNAATLDVE----------RLALP-SVAIANSLCFSPDGGTMYYCDSLQKRILCCDYPS------LDNQRIFAEVSGEGAPDGSCIDAMGFLWNAEWGGSRVVRYNPDGVVDSVLTLPAVQTTCPVMGGDEYDTLYCTSARVGLSSPKKDDGALFEVKSDKFKGLPESRFAG 283
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|654640194|ref|WP_028101383.1| (gluconolaconase [Pseudoduganella violaceinigra]) HSP 1 Score: 193.741 bits (491), Expect = 1.448e-56 Identity = 124/311 (39.87%), Postives = 164/311 (52.73%), Query Frame = 0
Query: 11 LVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFK-VRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPP-PGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEV-ETPGLPEGRF 318
LV+D +N+LGE VW + Q L W DI G+ L ++P++ S + +P+R S AL DD LL E A FN +TD + TE VRLNDGRCDR+GRF+ G N G A + + E LP V ANSICFSPDG +YF DS I DY + + R FA +PP G PDGS VD+ G+LWNAE+ +GR+VRY P+G ++R + +PVS+ TCP GG L LF+TSA + + E AGG+++ V + GLPE RF
Sbjct: 3 LVIDAQNVLGECAVWCDRKQCLWWTDILGRALWRFTPSNGTSQMWEMPERLASFALTHNDDRLLLGLESRLAWFN--LTDK-----------QILTITEVEADKPDVRLNDGRCDRQGRFVFGTMNEALGRAPIGSFFRL-------------GHELQLEQLPLSPVAIANSICFSPDGQIMYFCDSLSGAIRCCDYGEQ-----ISGEREFALLPPGCGEPDGSLVDADGFLWNAEWGAGRIVRYRPDGTIERAIAVPVSQPTCPAFGGAKLDELFVTSALIDLLVTEPHAGGVFSTRVTDAVGLPESRF 282
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|1099660821|emb|SFG12909.1| (L-arabinonolactonase [Duganella sp. CF458]) HSP 1 Score: 194.126 bits (492), Expect = 1.570e-56 Identity = 127/311 (40.84%), Postives = 164/311 (52.73%), Query Frame = 0
Query: 11 LVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHALVRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPFK-VRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVPPP-GVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEGKEEGAGGLWAMEV-ETPGLPEGRF 318
L++D +N LGE VW + Q LLW DI G+ L + P+ + + +P+R S AL A+ LL E A F+ EA E A R+NDGRCDR+GRF+ G N G A + R Y + + ELLP V ANSICFSPDG+ +YF DS I DY V R+FA +PP G PDGS VD+ G+LWNAE+ + R+VRY P+G V+R V +PVS+ TCP GG DL LF+TSA V + E AGG++ M V + GLPE RF
Sbjct: 3 LIVDAQNALGECIVWCGRTQALLWTDILGRKLWRHRPSSGETRQWDMPERLASFALTAAEGRLLLGLESRLAWFD-------------LATGEAMTIVEVEADVAATRINDGRCDRQGRFVFGTMNEAIGRAPVGR-------FYRLGHNR------QLELLPLSPVAIANSICFSPDGATMYFCDSLSGLIRCCDYGDD-----VSGERIFAHLPPGCGEPDGSVVDADGFLWNAEWGASRIVRYRPDGSVERAVAVPVSQPTCPVFGGPDLNQLFVTSALVDLLESERYAGGVFGMPVTDAVGLPEVRF 282
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|921253155|ref|WP_053196191.1| (gluconolaconase [Herbaspirillum hiltneri] >gi|917676773|gb|AKZ62515.1| gluconolaconase [Herbaspirillum hiltneri N3]) HSP 1 Score: 193.741 bits (491), Expect = 1.781e-56 Identity = 125/319 (39.18%), Postives = 174/319 (54.55%), Query Frame = 0
Query: 11 LVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHAL--VRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPF-KVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVP-PPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVE----GKEEGAGGLWAMEVE-TPGLPEGRFMG 320
L++D K+ LGE +W + Q + W DI+G TL ++PA+ + S+ +P+R AL D LL A FN D I T + L RLNDGRCDR+GRF+ G N D+G A + + + D SF E LP V +NSICFSPDG+ +YF D+ +I DYD +G V + +F + G PDGS +DS GYLWNA++ RVVRY+P+G VDR+V +PVS+ +CP GG +L TLF+T+A G++ +E AGGL+A+ ++ GLPE RF G
Sbjct: 5 LIVDGKHELGECAIWCDRTQSIFWTDIQGATLWNHNPANGATRSWPMPERLSVFALTAQTDRLLIGLASRLAFFNL---------------DSGEITTIRSVEQDLPTTRLNDGRCDRQGRFVFGTLNEDKGRAPIGSFYRLNT----------DLSF---ERLPLPGVAISNSICFSPDGTRMYFCDTMQDKIMSCDYDPVSG--AVGAYSLFVDLAGEKGGPDGSAIDSQGYLWNAQWGGARVVRYAPDGLVDRIVAVPVSQPSCPAFGGANLDTLFVTTAHEGMDEAARTREPTAGGLFAVTLDGVRGLPEVRFGG 293
BLAST of EWM23782.1 vs. NCBI_GenBank
Match: gi|515280423|ref|WP_016836716.1| (gluconolaconase [Herbaspirillum lusitanum]) HSP 1 Score: 192.971 bits (489), Expect = 3.508e-56 Identity = 122/319 (38.24%), Postives = 173/319 (54.23%), Query Frame = 0
Query: 11 LVLDLKNILGESPVWDVQAQVLLWIDIEGKTLHTYSPADERSASFSLPKRAGSIALREADDGLLFAFEDGFAIFNPFVTDTNAAKPPVYIPDEAYIETEPYRQHAL--VRLNDGRCDRRGRFIAGGYNGDEGDASMNREWEADCGVYAVEAGKGDASFAARELLPF-KVRCANSICFSPDGSHLYFTDSPHREIWVFDYDQATGRVVVDSRRVFATVP-PPGVPDGSCVDSAGYLWNAEFFSGRVVRYSPEGEVDRVVQLPVSRVTCPCLGGRDLKTLFLTSASVGVEG----KEEGAGGLWAMEVE-TPGLPEGRFMG 320
L++D K+ LGE +W + Q + W DI+G TL ++PA+ + S+ +P+R AL D LL A FN D I T + L RLNDGRCDR+GRF+ G N D+G A + + + + + E LP V +NSICFSPDG+ +YF D+ +I DYD +G + ++ VF + G PDGS +DS GYLWNA++ RVVRY+P+G VDR+V +PVS+ +CP GG DL TL++T+A G+ +E AGGL+A+ ++ GLPE RF G
Sbjct: 5 LIVDGKHELGECAIWCDRTQSIFWTDIQGATLWNHNPANGATHSWPMPERLSVFALTGQTDRLLIGLASRLAFFNL---------------DSGEITTIRTVEEDLPTTRLNDGRCDRQGRFVFGTLNEDQGRAPIGSFYRLNTDL-------------SLERLPLPGVAISNSICFSPDGARMYFCDTMQGKIMSCDYDPVSG--AIGAQDVFVDLAGEKGSPDGSAIDSQGYLWNAQWGGARVVRYAPDGLVDRIVAVPVSQPSCPAFGGADLDTLYVTTAHEGMNMLQRVEESKAGGLFAVRLDGIRGLPEVRFGG 293 The following BLAST results are available for this feature:
BLAST of EWM23782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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