rna6906, rna6906 (mRNA) Nannochloropsis gaditana

Overview
Namerna6906
Unique Namerna6906
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length483
Alignment locationCM002469.1:763926..766360 -

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Properties
Property NameValue
Productnudix family protein
Orig transcript idgnl|cribi|Naga_100475g4.2340.mrna
Orig protein idgnl|cribi|Naga_100475g4.2340
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:763926..766360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100475g4gene6676Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6906rna6906-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23784.1cds6890Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6906 ID=rna6906|Name=rna6906|organism=Nannochloropsis gaditana|type=mRNA|length=483bp
ATGGTGACGCTGGGGAAGGAGAGGATTACAGAGGGGTGGGACGGAAAAGC
GAGTGAGGGAGGGGCTCCTGAACTTGAAATGGAGGAGGCGAAAAAGGCTC
GGGAGAGGAGACAGGATTTGGCGATAGGAGTGGGAATGGAAGAGAAGGGA
ACGTTTAATTGTTTTTGTCATGCCTGTGGCGCGCGTGAAGGCGGGGGAGG
CCTACAGTGGTGGGAAAGTGCGAGGCTGGGGGAAGATAGGAGCGACCTGA
GGAGCGACAGTAGGGCCCGAGGCAGAGATTCGGTGTCTCCCTCCTTAAAC
ACACAAGGACGCCCGTTCTACACACAGAGGAAAGAGTCTTTAACCCGCAG
AGAGACTGCCAGCAGCTGTGTGAATGGTGGAAGGGGGTGGCGTGTATGGT
GGGGAGGGGGGGAGAGAGAGAGGAAGTTCAAGGACGACGGGTCGTGTGGG
AGAGGAAGGAAGCCGCAACAGCACGGGTTTTAA
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protein sequence of rna6906

>rna6906-protein ID=rna6906-protein|Name=rna6906|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIR
SPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPG
GMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEAL
HSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRGAFIDKK
MAEPSRESKGGFYFGTEDAG
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mRNA from alignment at CM002469.1:763926..766360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6906 ID=rna6906|Name=rna6906|organism=Nannochloropsis gaditana|type=mRNA|length=2435bp|location=Sequence derived from alignment at CM002469.1:763926..766360- (Nannochloropsis gaditana)
AGAGAAAGACGGGCCTGCGTGCCTGTGGCTTCCCCGGCGCCCTGTTCGCG
TTGCAAAGACCAACCCCCGCCTTCGGCCCCTGACTAGGTGGAACTGGACC
GATACGTGGAGCTGGCACCCCTGGCCCGGACGTCTTCCCAGCGCACGAGA
GCGATCGCCGACTTGATCCAAGCCTTGACCGCCGCCAAAGTCATCCCCAA
GGTGAGGCGAGGGGAGAGGGAGGAAGGAGGGCAGGGGGTTGAGGGAGGGG
CGAAAGGAGGGATTGCAACGTCTTTCTTTCGCCCACATGGTCCATGTTCT
TCCTCCAAGCGTTCCCTTTCTCCTATCTGAAGGACGCTTGCTCATTTTCT
CTCGCCTCCGCTCTTTGACTCATCTCCTGTCTCTTTTCCCTTCGTGTCCC
TCCCCTGTTCCTCGCTCCTCACTCTCCCGCCCTCCCCGCGTATTCCCCTC
CCTTCCTTCCACAGGGAAAAATCCGGAACGAGCTGATGGATGTGCGGCCC
ATGCTCTCCCCCCACTTCCAGGAACCACCGCTCTTTCAAATCGAGCGGTA
AGGCTGGGGCGAGGAGGGCAAGGGAGAGGGGTTGGAGAGGAGGGAAGAAG
GAGCGGCATATGAAGAGCAGAGTCATAGATAGAATGCCCGCCTGCCTAAC
ACACACGGTTGTGATACAGGTCCAGGCTTCCTACCTTGCGTGTCTTGACT
CTCCCTTCCCTTTTCTCTCTACTTCTTCGCCCTTTACCTCTCTCAAACTT
ACAAAGCGGCGCGATGATCAAATTCGGTGTCCCCACCCACGGGGTGCACA
TCAACGGCTACGTCCGCCTCCCCGCCCCTTCTCCCCCCTCTTCCTCCCCC
TCCTCCTCGACCTCCGCCCCTCCCTCCCCCGCCTCCTCCCTCCACATTTG
GGTCGGCATCCGCTCTCCCTCCAAGGCCACCTACCCCGGTCTTCGCGACG
TCTTGGCGGCAGGGGGGCAACCGTCCGGCCTCACCTTCCTCGAGAACGCG
GTCAAGGAAGCGGAGGAGGAGGCCAGCATTCCAAGGGGGCTCTTGCAAGG
CCTGCGCCCTGGGGGCATGATCTCCTATAGGTAGGAGCGGGAAAGACGGA
GGACAGAAAAATTGCGAAGAATATTTCGTCATGTTGTTGTCCTCGTGTGG
GTAGAAGCTGCTTTGAAAGCCTCATTCGTGCATGCTCGCTGTGTTCTCCC
TCCCCCCCTCCCCCCCTCCCTCCCTCCCTCCTTCTCTCTAGGTACCAGAC
CAAACACGGCCTCTCCACGAAGCTCCTTAACGTCTTCGACCTCGAGCTCC
CGCCCTCCTTCATCCCTTACAACGGCGACGGGGAGGTGGAGTCGTTTCAC
CTGATGCCTCTGTCAGAGGCATTGCACAGCCTCGGTATGCAAACGAGAGG
GAGGGGGAAAGGGCTGGGTGGGAAAGCGGTCGGGAGAAAGGCACGGCTGG
CGAAAGAGTGGGGACGGGGCCTGTTCTGGTAGTGTCTCCATTGGTTTGCG
CATCTTGATATCATGATAATCGAGATTGCTTCACTCATCAATCCTCCCGT
CTATGGCCTTGTCTTCCAACTCTCTGAGCGCTTCCGCCTGCCTCATCAGT
CTTTTTTCCACTTCAAACCCTATTTTCCTACATTCCCCCCTCCCGCTTTC
CCCTCAGAGCACGAGCTCAGCCTTTGGAAACCCAATGCGGCCCTCACAGT
CCTCGACTTCGCGGTGCGACACGGCGCTGTGGACGCAGATCATGAACACT
ACATCGAAATTTGCCACCTGCTCCGGGGGGCTTTCATCGACAAAAAAATG
GCCGAACCAAGTCGGGAGTCGAAAGGCGGGTTCTACTTCGGGACGGAGGA
CGCCGGTTAAAGGCCGTAGGGAACCAAGCCTCGTCTTTGCCGTGAAGTTT
GCCTGTGTCTGCCCTCGGTTATGGATTTTTGGTAGCCCACTTCGTTATTT
GTGCAGAGAGCTTAGTGATAGACAGTGCCAAAGGTGTGGATTTCCAAATC
GAACATGGCATGCGGAGGGTGGGCATAGAGCGTGTACACTGAAGAGGGTT
GACGTGGAACGGGAATAGTTATAAGATGATAGAGGTATGGACGTGTTCTA
ATGCGCTTGCAGTCAGGTGTAGTAGGGCGAGGCGGGGTTCGTTATGAGCG
TGTGCTGCGCCATGAATGCAATAAGAGGATCTCATGCCTCCGCTCCCCCC
CGGCTGGTTACCGATCAATTAAATTATTTGATAGCGGTGGAAATGTACAA
TGCAAGTAAAATTGTAACGAAGGTCAGTGCTGCTGAAGCCACACCACGGC
GCATGACGGTAGTGTGGGAAGCATGCGACCCCTGGGGCTGCCACAAGAGG
ACGCTTTCCCTTGAAGGAGTGAGGAAGAGGAAACGCCCAAAACAGCGACG
AAAAAGTTATCCAACATAGCGAACGTGAAGGTGGT
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Coding sequence (CDS) from alignment at CM002469.1:763926..766360-

>rna6906 ID=rna6906|Name=rna6906|organism=Nannochloropsis gaditana|type=CDS|length=1989bp|location=Sequence derived from alignment at CM002469.1:763926..766360- (Nannochloropsis gaditana)
AGCACGAGCTCAGCCTTTGGAAACCCAATGCGGCCCTCACAGTCCTCGAC
TTCGCGGTGCGACACGGCGCTGTGGACGCAGATCATGAACACTACATCGA
AATTTGCCACCTGCTCCGGGGGGCTTTCATCGACAAAAAAATGGCCGAAC
CAAGTCGGGAGTCGAAAGGCGGGTTCTACTTCGGGACGGAGGACGCCGGT
TAAGTACCAGACCAAACACGGCCTCTCCACGAAGCTCCTTAACGTCTTCG
ACCTCGAGCTCCCGCCCTCCTTCATCCCTTACAACGGCGACGGGGAGGTG
GAGTCGTTTCACCTGATGCCTCTGTCAGAGGCATTGCACAGCCTCGATGA
TCAAATTCGGTGTCCCCACCCACGGGGTGCACATCAACGGCTACGTCCGC
CTCCCCGCCCCTTCTCCCCCCTCTTCCTCCCCCTCCTCCTCGACCTCCGC
CCCTCCCTCCCCCGCCTCCTCCCTCCACATTTGGGTCGGCATCCGCTCTC
CCTCCAAGGCCACCTACCCCGGTCTTCGCGACGTCTTGGCGGCAGGGGGG
CAACCGTCCGGCCTCACCTTCCTCGAGAACGCGGTCAAGGAAGCGGAGGA
GGAGGCCAGCATTCCAAGGGGGCTCTTGCAAGGCCTGCGCCCTGGGGGCA
TGATCTCCTATAGAGCACGAGCTCAGCCTTTGGAAACCCAATGCGGCCCT
CACAGTCCTCGACTTCGCGGTGCGACACGGCGCTGTGGACGCAGATCATG
AACACTACATCGAAATTTGCCACCTGCTCCGGGGGGCTTTCATCGACAAA
AAAATGGCCGAACCAAGTCGGGAGTCGAAAGGCGGGTTCTACTTCGGGAC
GGAGGACGCCGGTTAAGTACCAGACCAAACACGGCCTCTCCACGAAGCTC
CTTAACGTCTTCGACCTCGAGCTCCCGCCCTCCTTCATCCCTTACAACGG
CGACGGGGAGGTGGAGTCGTTTCACCTGATGCCTCTGTCAGAGGCATTGC
ACAGCCTCGATGATCAAATTCGGTGTCCCCACCCACGGGGTGCACATCAA
CGGCTACGTCCGCCTCCCCGCCCCTTCTCCCCCCTCTTCCTCCCCCTCCT
CCTCGACCTCCGCCCCTCCCTCCCCCGCCTCCTCCCTCCACATTTGGGTC
GGCATCCGCTCTCCCTCCAAGGCCACCTACCCCGGTCTTCGCGACGTCTT
GGCGGCAGGGGGGCAACCGTCCGGCCTCACCTTCCTCGAGAACGCGGTCA
AGGAAGCGGAGGAGGAGGCCAGCATTCCAAGGGGGCTCTTGCAAGGCCTG
CGCCCTGGGGGCATGATCTCCTATAGAGCACGAGCTCAGCCTTTGGAAAC
CCAATGCGGCCCTCACAGTCCTCGACTTCGCGGTGCGACACGGCGCTGTG
GACGCAGATCATGAACACTACATCGAAATTTGCCACCTGCTCCGGGGGGC
TTTCATCGACAAAAAAATGGCCGAACCAAGTCGGGAGTCGAAAGGCGGGT
TCTACTTCGGGACGGAGGACGCCGGTTAAGTACCAGACCAAACACGGCCT
CTCCACGAAGCTCCTTAACGTCTTCGACCTCGAGCTCCCGCCCTCCTTCA
TCCCTTACAACGGCGACGGGGAGGTGGAGTCGTTTCACCTGATGCCTCTG
TCAGAGGCATTGCACAGCCTCGATGATCAAATTCGGTGTCCCCACCCACG
GGGTGCACATCAACGGCTACGTCCGCCTCCCCGCCCCTTCTCCCCCCTCT
TCCTCCCCCTCCTCCTCGACCTCCGCCCCTCCCTCCCCCGCCTCCTCCCT
CCACATTTGGGTCGGCATCCGCTCTCCCTCCAAGGCCACCTACCCCGGTC
TTCGCGACGTCTTGGCGGCAGGGGGGCAACCGTCCGGCCTCACCTTCCTC
GAGAACGCGGTCAAGGAAGCGGAGGAGGAGGCCAGCATTCCAAGGGGGCT
CTTGCAAGGCCTGCGCCCTGGGGGCATGATCTCCTATAG
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Synonyms
Publications