EWM23784.1, cds6890 (CDS) Nannochloropsis gaditana

Overview
NameEWM23784.1
Unique Namecds6890
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:765281..765597 -
Alignment locationCM002469.1:764977..765119 -
Alignment locationCM002469.1:764501..764703 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23784.1
Productnudix family protein
Orig transcript idgnl|cribi|Naga_100475g4.2340.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:765281..765597 -
CM002469.1supercontigCM002469.1:764977..765119 -
CM002469.1supercontigCM002469.1:764501..764703 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Homology
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|585105008|gb|EWM23784.1| (nudix family protein [Nannochloropsis gaditana])

HSP 1 Score: 446.817 bits (1148), Expect = 9.200e-159
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRGAFIDKKMAEPSRESKGGFYFGTEDAG 220
            MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRGAFIDKKMAEPSRESKGGFYFGTEDAG
Sbjct:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRGAFIDKKMAEPSRESKGGFYFGTEDAG 220          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|299115250|emb|CBN74091.1| (Adenylate kinase family protein [Ectocarpus siliculosus])

HSP 1 Score: 218.779 bits (556), Expect = 3.037e-64
Identity = 101/193 (52.33%), Postives = 132/193 (68.39%), Query Frame = 0
Query:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLR 193
            MI FGVP++GVH+NGYV+     P                  + +W+G+RS SKATYPG+ D + AGGQP+G+ F EN  KE EEEAS+P  L   ++P G +SYRY T+ GLSTK L VFDLE+P  F+PYNGDGEVE F LMP+ EAL +++ +L+ WKPN AL ++DFA+RHG +D DH  Y+E+ H LR
Sbjct:  424 MIHFGVPSYGVHLNGYVKATDTEP------------------MRVWIGVRSVSKATYPGMWDQMVAGGQPAGMGFKENMQKECEEEASLPSSLSCKIQPTGQVSYRYGTRKGLSTKFLCVFDLEVPEDFVPYNGDGEVEEFILMPVEEALKTIKTDLARWKPNCALVMIDFALRHGFLDPDHPDYLELVHQLR 598          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|551655568|ref|XP_005830558.1| (hypothetical protein GUITHDRAFT_110383 [Guillardia theta CCMP2712] >gi|428174684|gb|EKX43578.1| hypothetical protein GUITHDRAFT_110383 [Guillardia theta CCMP2712])

HSP 1 Score: 169.474 bits (428), Expect = 3.423e-48
Identity = 85/190 (44.74%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    4 FGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLR 193
            FGV  +GVH+N  VR              TS          +W+  R+ +KATYPG  D   AGGQP GL+  EN VKE EEEA IP+ +    RP G +SY Y T  GLS K L  +DLE+P  F+P   DGEV+SF  MP+ EA+ S+  ++ +WKPN+AL ++D A+RHG ++ D  +Y+EI  LLR
Sbjct:  106 FGVAAYGVHVNVLVR----------EERGTS----------VWIAKRALTKATYPGKLDQCVAGGQPQGLSLTENVVKECEEEAGIPQQVAATARPVGAVSYMYATNKGLSPKTLFCYDLEVPRDFVPRALDGEVDSFQKMPIEEAMRSVADQVDMWKPNSALVMIDLAIRHGILNGDEPNYLEILSLLR 275          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|676387375|ref|XP_009036966.1| (hypothetical protein AURANDRAFT_26480, partial [Aureococcus anophagefferens] >gi|323452361|gb|EGB08235.1| hypothetical protein AURANDRAFT_26480, partial [Aureococcus anophagefferens])

HSP 1 Score: 163.31 bits (412), Expect = 2.619e-47
Identity = 96/194 (49.48%), Postives = 123/194 (63.40%), Query Frame = 0
Query:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLL-QGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLR 193
            ++ FGV ++G H++GYV     +     P++             +WV  R+ SK TY GL D +AAGG P+ LT LENA KEAEEEASIPR +L + LRP G +SY+Y  K GLS K L VFDL LP   +P NGDGEV+ F L+P+ EA+ SL  EL  WKPN+AL +LDFA+RHG VD D   ++ I   LR
Sbjct:    9 VVAFGVVSYGCHVSGYV-----AGDDGRPAA-------------VWVATRALSKPTYAGLYDQIAAGGLPAELTLLENAKKEAEEEASIPRAVLDRDLRPAGCVSYKYAAKRGLSAKTLVVFDLRLPRELVPMNGDGEVDEFRLVPVDEAVDSLRDELFKWKPNSALVMLDFAMRHGFVDPDDPEFVPIAQALR 184          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|1189380160|gb|OSX68594.1| (hypothetical protein BU14_2525s0001 [Porphyra umbilicalis])

HSP 1 Score: 162.925 bits (411), Expect = 2.578e-46
Identity = 85/191 (44.50%), Postives = 114/191 (59.69%), Query Frame = 0
Query:    4 FGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHE-HYIEICHLLR 193
            FG+  +G+H+NGYVR                        L +WV  RS +KATY GL D + AGG PSG++ +EN  KEA EEA +    L  L   G +SYRY+T+ GLS K L ++DLELPPSF P N DGEVE F+L+P+S  L S+   L  WKPN+A+ +++FAVRHG ++   E  Y+ +   LR
Sbjct:   90 FGLRGYGIHVNGYVRRDG--------------------QLFVWVATRSHNKATYAGLFDQMVAGGLPSGVSLIENVAKEAVEEAGVDLADLDNLTSVGSLSYRYETRKGLSAKSLFLYDLELPPSFTPINLDGEVEEFNLVPVSAVLESIACNLRAWKPNSAVVMIEFAVRHGVINPTCEPDYLRLSKYLR 260          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|1016234117|ref|WP_062948174.1| (DUF4743 domain-containing protein [Thalassospira lucentensis] >gi|1016020198|gb|KZB69123.1| NTP pyrophosphohydrolase [Thalassospira lucentensis])

HSP 1 Score: 155.606 bits (392), Expect = 4.310e-43
Identity = 82/191 (42.93%), Postives = 109/191 (57.07%), Query Frame = 0
Query:    4 FGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRG 194
            FG  + GVH+NGYVR                      + +H+WV  R+  K TYPG+ D + AGGQP+GL FLEN +KE  EEA+IP  L + L+P G ISY Y+T  GL   ++  +DLELP  F+P   DGEVE F L+PL+E    +      +K N AL ++DF +RHG + AD+E   E C L  G
Sbjct:  113 FGFRSWGVHMNGYVR--------------------KDNDIHMWVAHRAKDKPTYPGMLDNMVAGGQPAGLGFLENMIKECAEEAAIPETLARNLKPVGTISYLYETNEGLKPDVMVNYDLELPADFVPQCADGEVERFELLPLAEVAEIVRKSFD-FKFNCALVIIDFLIRHGFLTADNEP--EYCQLTTG 280          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|1016260803|ref|WP_062961109.1| (DUF4743 domain-containing protein [Thalassospira xiamenensis] >gi|1016001685|gb|KZB51039.1| NTP pyrophosphohydrolase [Thalassospira xiamenensis])

HSP 1 Score: 153.295 bits (386), Expect = 3.741e-42
Identity = 81/191 (42.41%), Postives = 108/191 (56.54%), Query Frame = 0
Query:    4 FGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHEHYIEICHLLRG 194
            FG  + GVH+NGYVR                      + +H+WV  R+  K TYP + D + AGGQP+GL FLEN +KE  EEA+IP  L + L+P G ISY Y+T  GL   ++  +DLELP  F+P   DGEVE F L+PL+E    +      +K N AL ++DF +RHG + AD+E   E C L  G
Sbjct:  113 FGFRSWGVHMNGYVR--------------------KGNDIHMWVAHRAKDKPTYPSMLDNMVAGGQPAGLGFLENMIKECAEEAAIPETLSRNLKPVGTISYLYETNEGLKPDVMVNYDLELPADFVPQCADGEVERFELLPLAEVAEIVRKSFD-FKFNCALVIIDFLIRHGFLTADNEP--EYCQLTTG 280          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|1046636808|ref|WP_065701775.1| (MULTISPECIES: DUF4743 domain-containing protein [Thalassospira] >gi|1046349747|gb|OCK06199.1| thiamine pyrophosphokinase [Thalassospira sp. KO164] >gi|1089029455|emb|SED58575.1| protein of unknown function [Thalassospira sp. KO164] >gi|1095599472|gb|OHZ02166.1| DUF4743 domain-containing protein [Thalassospira sp. MIT1004])

HSP 1 Score: 151.369 bits (381), Expect = 2.043e-41
Identity = 76/180 (42.22%), Postives = 104/180 (57.78%), Query Frame = 0
Query:    4 FGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHE 183
            FG  + GVH+NGYV+                        +H+W+  R+  K TYPG+ D + AGGQP+GL FLEN +KE  EEA+IP  L + L+P G +SY Y+T  GL   ++  +DLELP  F+P   DGEVE F LMPL+E    +      +K N AL ++DF +RHG + AD+E
Sbjct:  113 FGFRSWGVHMNGYVQ--------------------KDDGIHMWIAHRAKDKPTYPGMLDNMVAGGQPTGLGFLENMIKECAEEAAIPENLSRNLKPVGTVSYLYETTEGLKPDVMVNYDLELPADFVPRCADGEVERFELMPLAEVAEIVRSSFD-FKFNCALVIIDFLIRHGFLTADNE 271          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|494150422|ref|WP_007090167.1| (DUF4743 domain-containing protein [Thalassospira xiamenensis] >gi|745810794|gb|AJD53490.1| NTP pyrophosphohydrolase including oxidative damage repair enzyme [Thalassospira xiamenensis M-5 = DSM 17429] >gi|1131950513|emb|SIT07344.1| protein of unknown function [Thalassospira xiamenensis M-5 = DSM 17429])

HSP 1 Score: 150.984 bits (380), Expect = 2.506e-41
Identity = 77/183 (42.08%), Postives = 105/183 (57.38%), Query Frame = 0
Query:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHE 183
            M  FG  + GVH+NGYV+                        +H+W+  R+  K TYPG+ D + AGGQP+GL FLEN +KE  EEA+IP  L + L+P G +SY Y+T  GL   ++  +DLELP  F+P   DGEVE F LMPL+E    +      +K N AL ++DF +RHG + AD+E
Sbjct:  110 MPYFGFRSWGVHMNGYVQ--------------------KDDGIHMWIAHRAKDKPTYPGMLDNMVAGGQPTGLGFLENMIKECAEEAAIPENLSRNLKPVGTVSYLYETTEGLKPDVMVNYDLELPADFVPRCADGEVERFELMPLAEVAEIVRSSFD-FKFNCALVIIDFLIRHGFLTADNE 271          
BLAST of EWM23784.1 vs. NCBI_GenBank
Match: gi|1189219897|ref|WP_085645905.1| (DUF4743 domain-containing protein [Thalassospira sp. MCCC 1A03138] >gi|1187729839|gb|OSQ28810.1| NTP pyrophosphohydrolase [Thalassospira sp. MCCC 1A03138])

HSP 1 Score: 150.214 bits (378), Expect = 4.671e-41
Identity = 76/183 (41.53%), Postives = 105/183 (57.38%), Query Frame = 0
Query:    1 MIKFGVPTHGVHINGYVRLPAPSPPSSSPSSSTSAPPSPASSLHIWVGIRSPSKATYPGLRDVLAAGGQPSGLTFLENAVKEAEEEASIPRGLLQGLRPGGMISYRYQTKHGLSTKLLNVFDLELPPSFIPYNGDGEVESFHLMPLSEALHSLEHELSLWKPNAALTVLDFAVRHGAVDADHE 183
            M  FG  + GVH+NGYV+                        +H+W+  R+  K TYPG+ D + AGGQP+GL FLEN +KE  EEA+IP  L + L+P G +SY Y+T  GL   ++  +DLELP  F+P   DGEVE F LMPL++    +      +K N AL ++DF +RHG + AD+E
Sbjct:  110 MPYFGFRSWGVHMNGYVQ--------------------KDEGIHMWIAHRAKDKPTYPGMLDNMVAGGQPTGLGFLENMIKECAEEAAIPENLSRNLKPVGTVSYLYETTEGLKPDVMVNYDLELPADFVPRCADGEVEQFELMPLADVAEIVRSSFD-FKFNCALVIIDFLIRHGFLTADNE 271          
The following BLAST results are available for this feature:
BLAST of EWM23784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105008|gb|EWM23784.1|9.200e-159100.00nudix family protein [Nannochloropsis gaditana][more]
gi|299115250|emb|CBN74091.1|3.037e-6452.33Adenylate kinase family protein [Ectocarpus silicu... [more]
gi|551655568|ref|XP_005830558.1|3.423e-4844.74hypothetical protein GUITHDRAFT_110383 [Guillardia... [more]
gi|676387375|ref|XP_009036966.1|2.619e-4749.48hypothetical protein AURANDRAFT_26480, partial [Au... [more]
gi|1189380160|gb|OSX68594.1|2.578e-4644.50hypothetical protein BU14_2525s0001 [Porphyra umbi... [more]
gi|1016234117|ref|WP_062948174.1|4.310e-4342.93DUF4743 domain-containing protein [Thalassospira l... [more]
gi|1016260803|ref|WP_062961109.1|3.741e-4242.41DUF4743 domain-containing protein [Thalassospira x... [more]
gi|1046636808|ref|WP_065701775.1|2.043e-4142.22MULTISPECIES: DUF4743 domain-containing protein [T... [more]
gi|494150422|ref|WP_007090167.1|2.506e-4142.08DUF4743 domain-containing protein [Thalassospira x... [more]
gi|1189219897|ref|WP_085645905.1|4.671e-4141.53DUF4743 domain-containing protein [Thalassospira s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6906rna6906Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications