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Properties
| Property Name | Value |
|---|
| Product | protein of unknown function DUF2439 |
| Orig transcript id | gnl|cribi|Naga_100537g2.2044.mrna |
| Orig protein id | gnl|cribi|Naga_100537g2.2044 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:746116..748205 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6897 ID=rna6897|Name=rna6897|organism=Nannochloropsis gaditana|type=mRNA|length=630bp
ATGTACATGATATTGAAGCCACTAATTGCCCTTGTGGCATGGACAGCCTT
TTCGGTCGTGGCAGCCGAGCAATGCGCGACTCCTCCCAAACTAAGGCGAG
TGCAGGTCAACACTGAGGTGAAACACATAGATTTGGGTGTGAGTGGAGGT
TCAGGCCCTTCGATAGCGGCGAACGGGACAGATTTCTTCTTGATGCAATT
CGCCATCGACCTCCCAGAGCCTGTCTATGATGGTTGGAACATCACCTTGC
GATTTGACAAGACCATCTTCATGATCCAGAACCTGGAGGCGGACCTGATC
GAGCACAACGCGGACAACACCACCCTCATCTTCGGGCCCAAGGAGTGGAA
TCAAGACCTCAAACCGGGCTTTCAATGGCAAGCTTGGCAAGGCTCGTGTG
CAGGCTCCCCCCTGCATGTCTTGGAGAGCTACCTCTCCTACGATCCCACC
GCCCTTCCTCCCTCTCGTCCTCCCCCCCGCCCCCTCCACATGGAGCCTCC
CGGTGTCACGGTGCACTTGCCCGTAGAGGGAGAGAAGTTCAACCTGGCGA
AATCGTTGCAGTTCTCGATGCTCTTCTACGAAGCGCAACGGAGTGGACGC
ATGCCCAGCAATAAACGCGTTTCGCGGTAG back to topprotein sequence of rna6897 >rna6897-protein ID=rna6897-protein|Name=rna6897|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MRAVPNLLSLFERVRYYFTLIPPFFLPPSPPTHAGSLSTARVMERRTCLY
TRRLTQRQKKWQDGFLFLNRSSGKVHIKSENGEATIHSALLKPIEVADWA
EGDEITVEGMLLVSVGEVLEENGAARQGQFGELPDSCHFTATRVPVHAFA
THLSSVSPLPSTSMSSLTGIQRCFLRPRAPLRVFPEEESTGTTRPRFVSP
VMQRPPSGDVVMPTRDLPQEERAIGGREEGEMGEGIDTAGDRARSVLGTR
SVLPHRIRSKFVGRGLGWNIEGGTEGRKGGETEKQGNGRREDADGKQSLP
SHSPPQRLAGGAVPSAVASGTRSPPSSRVLQSNVPSSISAPSVFSFPPSS
SCARPPPAFLPPSSATSSSSSSSSSSSFSSPYSVLSPSSSAFFRASTTCL
EFMTPAVRARWPVLRHVILPTSYPSSADYVDALLAATTEEINLSLAELAS
RFLMAWQGRQRGTGGGRGGGRGAAEGATSMEALRRAGGVCYYSDVELIVS
RKRKEGDE back to topmRNA from alignment at CM002469.1:746116..748205+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6897 ID=rna6897|Name=rna6897|organism=Nannochloropsis gaditana|type=mRNA|length=2090bp|location=Sequence derived from alignment at CM002469.1:746116..748205+ (Nannochloropsis gaditana)
GACTCATTTGCGATAATGGAAGATGCGTGCAGTTCCCAACTTACTCTCCC
TTTTTGAACGTGTCCGTTACTACTTCACTCTTAtcccgcctttctttctc
cctccctccccccccactcaTGCCGGTAGTCTCAGCACAGCCCGGGTCAT
GGAGCGTCGAACTTGCCTGTATACAAGGAGACTTACTCAACGGCAAAAAA
AATGGCAAGatggcttcctcttcctgaaTCGAAGTTCTGGTAAAGTGCAC
ATCAAGAGCGAGAATGGGGTGAGTGCAACAGAGCCCAAACGCGTGTGTCT
GACGCATCGGGTTTTCCACGATGGTGCCTATGTGAGGTCCTTAAATGATA
TAGAGGTGGTAAATGGTGTCCCTGACTTTTAATTTCCTTGACTTTACAAC
GGGATCGATCGCCCCGAACCTCCGCTGCCTTGAAATATCAGGAGGCGACA
ATTCACTCCGCGCTCCTGAAGCCGATCGAGGTCGCAGACTgggcagaggg
agacgaAATAACGGTGGAAGGCATGCTCCTGGTTTCCGTGGGGGAAGttt
tggaagaaaatggtgCGGCAAGACAGGGGCAGTTCGGTGAACTTCCCGAC
TCATGTCATTTTACCGCCACAAGGGTGCCGGTACATGCCTTTGCAACGCA
CCTCTCGTCCGTATCTCCTCTGCCCTCTACCTCAATGTCTTCTCTCACGG
GAATACAGCGATGCTTTCTGAGGCCGCGGGCCCCCCTGAGAGTATTTCCA
GAAGAGGAAAGCACAGGGACAACGCGGCCGCGCTTTGTCTCGCCGGTCAT
GCAGAGACCCCCTTCTGGCGATGTGGTTATGCCCACGAGAGATCTTcccc
aagaagaaagagccattggaggacgcgaagaaggggaaatgggggaggga
atagACACGGCAGGAGACAGAGCAAGGAGTGTCTTGGGAACCAGGAGTGT
ACTGCCCCACAGAATTCGGAGCAAGTTTGTGGGAAGGGGTTTGGGATGGA
ACATCGAAGGGGGaacggaaggaagaaaagggggagaaacaGAAAAACAA
GGGaacgggagaagggaggatgcTGACGGTAAACAGTCGCTCCCATCTCA
TTCGCCGCCTCAGAGGCTGGCTGGCGGAGCTGTGCCCTCAGCTGTCGCCT
CAGGGACGAGGTCCCCGCCAAGCTCGAGAGTCCTGCAGTCAaacgtcccc
tcctccatctcggcCCCTtctgtcttctcctttcctccctcttcctcgtg
cgcccgtccccctcctgctttccttcctccctcatctgctacttcttcct
cttcctcctcttcctcctcttcctccttctcctctccgtATTCTGTCtta
tctccttcctcctccgcttttttCCGAGCGAGTACCACCTGCCTGGAATT
CATGACCCCCGCTGTGCGCGCCCGATGGCCGGTTCTacggtgaggaaggg
atggagggaggcctcaaagacagggaggaggagcccgcAATGTTGTCCGG
GAGGGTCTaatccctccatccagcCTCCGCTTCTCCGACCCGCCCTTTCT
ttactcttcctccttctctaccTCCTTAGGCATGTCATTCTCCCCACTTC
CTACCCTTCCTCAGCGGACTATGtggacgccctcctcgctgccaccACGG
AGGAAATCAATCTCTCCTTGGCCGAGCTGGCTTCTCGCTTCCTCATGGCC
TGGCAGGGACGACAAagagggaccgggggaggcaggggggggggaagggg
ggcagcgGAAGGAGCCACGAGGTAGGAGGGTTGGGACGACAACCACCGAA
CGAATTCCTGTCTCTTCCCGGAATgcttccctgtcttccttctttcctca
cTCTCGCTGTCTCGTTGTCCTAACGTTCTACTCCTCAAAAATTTTCATGA
GCTTGCACATCGAAACTTTAAAAGAAGCTTTGGCTGTGCTTATcaccctc
ccatcctccctctctctccccctcccttgtctccgACCGCCCTGGTCAGT
ATGGAGGCCTTGCGCCGAGCAGGGGGCGTTTGCTACTACTCGGACGTGGA
GCTGATCGTCTCAcggaagcggaaggagggagatgagtaa back to topCoding sequence (CDS) from alignment at CM002469.1:746116..748205+ >rna6897 ID=rna6897|Name=rna6897|organism=Nannochloropsis gaditana|type=CDS|length=6108bp|location=Sequence derived from alignment at CM002469.1:746116..748205+ (Nannochloropsis gaditana)
ATGCGTGCAGTTCCCAACTTACTCTCCCTTTTTGAACGTGTCCGTTACTA
CTTCACTCTTAtcccgcctttctttctccctccctccccccccactcaTG
CCGGTAGTCTCAGCACAGCCCGGGTCATGGAGCGTCGAACTTGCCTGTAT
ACAAGGAGACTTACTCAACGGCAAAAAAAATGGCAAGatggcttcctctt
cctgaaTCGAAGTTCTGGTAAAGTGCACATCAAGAGCGAGAATGGGGAGG
CGACAATTCACTCCGCGCTCCTGAAGCCGATCGAGGTCGCAGACTgggca
gagggagacgaAATAACGGTGGAAGGCATGCTCCTGGTTTCCGTGGGGGA
AGttttggaagaaaatggtgCGGCAAGACAGGGGCAGTTCGGTGAACTTC
CCGACTCATGTCATTTTACCGCCACAAGGGTGCCGGTACATGCCTTTGCA
ACGCACCTCTCGTCCGTATCTCCTCTGCCCTCTACCTCAATGTCTTCTCT
CACGGGAATACAGCGATGCTTTCTGAGGCCGCGGGCCCCCCTGAGAGTAT
TTCCAGAAGAGGAAAGCACAGGGACAACGCGGCCGCGCTTTGTCTCGCCG
GTCATGCAGAGACCCCCTTCTGGCGATGTGGTTATGCCCACGAGAGATCT
Tccccaagaagaaagagccattggaggacgcgaagaaggggaaatggggg
agggaatagACACGGCAGGAGACAGAGCAAGGAGTGTCTTGGGAACCAGG
AGTGTACTGCCCCACAGAATTCGGAGCAAGTTTGTGGGAAGGGGTTTGGG
ATGGAACATCGAAGGGGGaacggaaggaagaaaagggggagaaacaGAAA
AACAAGGGaacgggagaagggaggatgcTGACGGTAAACAGTCGCTCCCA
TCTCATTCGCCGCCTCAGAGGCTGGCTGGCGGAGCTGTGCCCTCAGCTGT
CGCCTCAGGGACGAGGTCCCCGCCAAGCTCGAGAGTCCTGCAGTCAaacg
tcccctcctccatctcggcCCCTtctgtcttctcctttcctccctcttcc
tcgtgcgcccgtccccctcctgctttccttcctccctcatctgctacttc
ttcctcttcctcctcttcctcctcttcctccttctcctctccgtATTCTG
TCttatctccttcctcctccgcttttttCCGAGCGAGTACCACCTGCCTG
GAATTCATGACCCCCGCTGTGCGCGCCCGATGGCCGGTTCTacgGCATGT
CATTCTCCCCACTTCCTACCCTTCCTCAGCGGACTATGtggacgccctcc
tcgctgccaccACGGAGGAAATCAATCTCTCCTTGGCCGAGCTGGCTTCT
CGCTTCCTCATGGCCTGGCAGGGACGACAAagagggaccgggggaggcag
gggggggggaaggggggcagcgGAAGGAGCCACGAGTATGGAGGCCTTGC
GCCGAGCAGGGGGCGTTTGCTACTACTCGGACGTGGAGCTGATCGTCTCA
cggaagcggaaggagggagatgagtaaATGCGTGCAGTTCCCAACTTACT
CTCCCTTTTTGAACGTGTCCGTTACTACTTCACTCTTAtcccgcctttct
ttctccctccctccccccccactcaTGCCGGTAGTCTCAGCACAGCCCGG
GTCATGGAGCGTCGAACTTGCCTGTATACAAGGAGACTTACTCAACGGCA
AAAAAAATGGCAAGatggcttcctcttcctgaaTCGAAGTTCTGGTAAAG
TGCACATCAAGAGCGAGAATGGGGAGGCGACAATTCACTCCGCGCTCCTG
AAGCCGATCGAGGTCGCAGACTgggcagagggagacgaAATAACGGTGGA
AGGCATGCTCCTGGTTTCCGTGGGGGAAGttttggaagaaaatggtgCGG
CAAGACAGGGGCAGTTCGGTGAACTTCCCGACTCATGTCATTTTACCGCC
ACAAGGGTGCCGGTACATGCCTTTGCAACGCACCTCTCGTCCGTATCTCC
TCTGCCCTCTACCTCAATGTCTTCTCTCACGGGAATACAGCGATGCTTTC
TGAGGCCGCGGGCCCCCCTGAGAGTATTTCCAGAAGAGGAAAGCACAGGG
ACAACGCGGCCGCGCTTTGTCTCGCCGGTCATGCAGAGACCCCCTTCTGG
CGATGTGGTTATGCCCACGAGAGATCTTccccaagaagaaagagccattg
gaggacgcgaagaaggggaaatgggggagggaatagACACGGCAGGAGAC
AGAGCAAGGAGTGTCTTGGGAACCAGGAGTGTACTGCCCCACAGAATTCG
GAGCAAGTTTGTGGGAAGGGGTTTGGGATGGAACATCGAAGGGGGaacgg
aaggaagaaaagggggagaaacaGAAAAACAAGGGaacgggagaagggag
gatgcTGACGGTAAACAGTCGCTCCCATCTCATTCGCCGCCTCAGAGGCT
GGCTGGCGGAGCTGTGCCCTCAGCTGTCGCCTCAGGGACGAGGTCCCCGC
CAAGCTCGAGAGTCCTGCAGTCAaacgtcccctcctccatctcggcCCCT
tctgtcttctcctttcctccctcttcctcgtgcgcccgtccccctcctgc
tttccttcctccctcatctgctacttcttcctcttcctcctcttcctcct
cttcctccttctcctctccgtATTCTGTCttatctccttcctcctccgct
tttttCCGAGCGAGTACCACCTGCCTGGAATTCATGACCCCCGCTGTGCG
CGCCCGATGGCCGGTTCTacgGCATGTCATTCTCCCCACTTCCTACCCTT
CCTCAGCGGACTATGtggacgccctcctcgctgccaccACGGAGGAAATC
AATCTCTCCTTGGCCGAGCTGGCTTCTCGCTTCCTCATGGCCTGGCAGGG
ACGACAAagagggaccgggggaggcaggggggggggaaggggggcagcgG
AAGGAGCCACGAGTATGGAGGCCTTGCGCCGAGCAGGGGGCGTTTGCTAC
TACTCGGACGTGGAGCTGATCGTCTCAcggaagcggaaggagggagatga
gtaaATGCGTGCAGTTCCCAACTTACTCTCCCTTTTTGAACGTGTCCGTT
ACTACTTCACTCTTAtcccgcctttctttctccctccctccccccccact
caTGCCGGTAGTCTCAGCACAGCCCGGGTCATGGAGCGTCGAACTTGCCT
GTATACAAGGAGACTTACTCAACGGCAAAAAAAATGGCAAGatggcttcc
tcttcctgaaTCGAAGTTCTGGTAAAGTGCACATCAAGAGCGAGAATGGG
GAGGCGACAATTCACTCCGCGCTCCTGAAGCCGATCGAGGTCGCAGACTg
ggcagagggagacgaAATAACGGTGGAAGGCATGCTCCTGGTTTCCGTGG
GGGAAGttttggaagaaaatggtgCGGCAAGACAGGGGCAGTTCGGTGAA
CTTCCCGACTCATGTCATTTTACCGCCACAAGGGTGCCGGTACATGCCTT
TGCAACGCACCTCTCGTCCGTATCTCCTCTGCCCTCTACCTCAATGTCTT
CTCTCACGGGAATACAGCGATGCTTTCTGAGGCCGCGGGCCCCCCTGAGA
GTATTTCCAGAAGAGGAAAGCACAGGGACAACGCGGCCGCGCTTTGTCTC
GCCGGTCATGCAGAGACCCCCTTCTGGCGATGTGGTTATGCCCACGAGAG
ATCTTccccaagaagaaagagccattggaggacgcgaagaaggggaaatg
ggggagggaatagACACGGCAGGAGACAGAGCAAGGAGTGTCTTGGGAAC
CAGGAGTGTACTGCCCCACAGAATTCGGAGCAAGTTTGTGGGAAGGGGTT
TGGGATGGAACATCGAAGGGGGaacggaaggaagaaaagggggagaaaca
GAAAAACAAGGGaacgggagaagggaggatgcTGACGGTAAACAGTCGCT
CCCATCTCATTCGCCGCCTCAGAGGCTGGCTGGCGGAGCTGTGCCCTCAG
CTGTCGCCTCAGGGACGAGGTCCCCGCCAAGCTCGAGAGTCCTGCAGTCA
aacgtcccctcctccatctcggcCCCTtctgtcttctcctttcctccctc
ttcctcgtgcgcccgtccccctcctgctttccttcctccctcatctgcta
cttcttcctcttcctcctcttcctcctcttcctccttctcctctccgtAT
TCTGTCttatctccttcctcctccgcttttttCCGAGCGAGTACCACCTG
CCTGGAATTCATGACCCCCGCTGTGCGCGCCCGATGGCCGGTTCTacgGC
ATGTCATTCTCCCCACTTCCTACCCTTCCTCAGCGGACTATGtggacgcc
ctcctcgctgccaccACGGAGGAAATCAATCTCTCCTTGGCCGAGCTGGC
TTCTCGCTTCCTCATGGCCTGGCAGGGACGACAAagagggaccgggggag
gcaggggggggggaaggggggcagcgGAAGGAGCCACGAGTATGGAGGCC
TTGCGCCGAGCAGGGGGCGTTTGCTACTACTCGGACGTGGAGCTGATCGT
CTCAcggaagcggaaggagggagatgagtaaATGCGTGCAGTTCCCAACT
TACTCTCCCTTTTTGAACGTGTCCGTTACTACTTCACTCTTAtcccgcct
ttctttctccctccctccccccccactcaTGCCGGTAGTCTCAGCACAGC
CCGGGTCATGGAGCGTCGAACTTGCCTGTATACAAGGAGACTTACTCAAC
GGCAAAAAAAATGGCAAGatggcttcctcttcctgaaTCGAAGTTCTGGT
AAAGTGCACATCAAGAGCGAGAATGGGGAGGCGACAATTCACTCCGCGCT
CCTGAAGCCGATCGAGGTCGCAGACTgggcagagggagacgaAATAACGG
TGGAAGGCATGCTCCTGGTTTCCGTGGGGGAAGttttggaagaaaatggt
gCGGCAAGACAGGGGCAGTTCGGTGAACTTCCCGACTCATGTCATTTTAC
CGCCACAAGGGTGCCGGTACATGCCTTTGCAACGCACCTCTCGTCCGTAT
CTCCTCTGCCCTCTACCTCAATGTCTTCTCTCACGGGAATACAGCGATGC
TTTCTGAGGCCGCGGGCCCCCCTGAGAGTATTTCCAGAAGAGGAAAGCAC
AGGGACAACGCGGCCGCGCTTTGTCTCGCCGGTCATGCAGAGACCCCCTT
CTGGCGATGTGGTTATGCCCACGAGAGATCTTccccaagaagaaagagcc
attggaggacgcgaagaaggggaaatgggggagggaatagACACGGCAGG
AGACAGAGCAAGGAGTGTCTTGGGAACCAGGAGTGTACTGCCCCACAGAA
TTCGGAGCAAGTTTGTGGGAAGGGGTTTGGGATGGAACATCGAAGGGGGa
acggaaggaagaaaagggggagaaacaGAAAAACAAGGGaacgggagaag
ggaggatgcTGACGGTAAACAGTCGCTCCCATCTCATTCGCCGCCTCAGA
GGCTGGCTGGCGGAGCTGTGCCCTCAGCTGTCGCCTCAGGGACGAGGTCC
CCGCCAAGCTCGAGAGTCCTGCAGTCAaacgtcccctcctccatctcggc
CCCTtctgtcttctcctttcctccctcttcctcgtgcgcccgtccccctc
ctgctttccttcctccctcatctgctacttcttcctcttcctcctcttcc
tcctcttcctccttctcctctccgtATTCTGTCttatctccttcctcctc
cgcttttttCCGAGCGAGTACCACCTGCCTGGAATTCATGACCCCCGCTG
TGCGCGCCCGATGGCCGGTTCTacgGCATGTCATTCTCCCCACTTCCTAC
CCTTCCTCAGCGGACTATGtggacgccctcctcgctgccaccACGGAGGA
AATCAATCTCTCCTTGGCCGAGCTGGCTTCTCGCTTCCTCATGGCCTGGC
AGGGACGACAAagagggaccgggggaggcaggggggggggaaggggggca
gcgGAAGGAGCCACGAGTATGGAGGCCTTGCGCCGAGCAGGGGGCGTTTG
CTACTACTCGGACGTGGAGCTGATCGTCTCAcggaagcggaaggagggag
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