rna6891, rna6891 (mRNA) Nannochloropsis gaditana

Overview
Namerna6891
Unique Namerna6891
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationCM002469.1:727785..728565 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102479g1.8316.mrna
Orig protein idgnl|cribi|Naga_102479g1.8316
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:727785..728565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102479g1gene6662Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23798.1cds6875Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6891rna6891-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6891 ID=rna6891|Name=rna6891|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
ATGCTTGGTGAAAGCATTCAATCAACTGATAAGGCGGGCACTGCCGACAT
TTCCCCTCTTTCCACACGCTTGGCCTTCAATATACCTCAGGATGTGGCGG
TATCGGGCTTTGTCAATAACAACAAGACCCAGCATCATTTCACTTTTACG
GGCATCCTGGGCATGGAAGTATTGCAAGACGAAGTCTTTGCACACCTGGG
CCGGGAGGTGGTTCTCAATGCCATGGATGGATATAATTCCACCATCTTCG
CCTATGGGCAGACCGGCTCAGGGAAGACATTTACCATCACCGGCGGCCCG
GAGAGGTATGCCGACCGAGGACTCATCCCTCGGACATTACAGATGCTCTT
CCAAGAAATACGCCGGCGGGGATTCCACAGCGCAGGGGCCGGGACGGACG
AGGAGGCAGCACCGGTCATGTATCAGGTGTGTGTATCCTACCTGGAAATT
TACAACGAGATGGGCTACGATTTGCTGGGGGAAGAGAACCGGAAGGAGGA
GGGACGGCAGGGAGAAAGCGGCGCGCTGAGGTTGCCTCGCGTGGTGCCAT
TGGAAGACGAAGGTGGGCACTGCCAACTCCGAGGGCTTTCCGTGCACCCC
GTGAGCACGGAGGAGGACGCGTTGAACCTGCTTTTTGTCGGCGACACAAA
CCGGGCCATCGGGGAGACGGCCACGAACGAGGCGTCTTCCCGTTCCCATT
GCTTGTTCATGCTCACCTTGGAGGGACGGAGGCCGGGGAAGGAGACGGTG
CGGCGGAGCAAGTTGAACCTGGTGGATTTGGCGGGCTCAGAACGGGTCCA
CAAAACGGGGGGAAACGGACTGGGAAGGGGGGGACAGACATTACGGGAGG
CCAAATACATCAATCAGTCCCTCTTTTATTTGGAGAACGTCATTTTGGCT
TTGTACGAGAAGCGTTCGCACGTGCCATACCGGAACAGTTTGATGACGTC
CGTGTTGCGAGACAGTTTAGGGGGAAACTGCCGCACCGTGATGGTGGCGA
CCGTGGCGACCGAACGGAGCCACACGGAAGAATCCTTATCCACTTGTCGG
TTCGCCATGCGCGTGGGCCAGATTCGAAACGATGCGAAACAGAACGAGGA
TCTGGACCCTTTTCAGGTCATCAAACGCCTTCAGACCCAACTGGTGGCCG
CGCGGGCGGAGGCGGGATGGACCGAGAAGGGCGGGAAGGAGGTTCCGCTG
AGCGAAGAGGAAAAAGATGCGGTGCGAGCCGCCTGTCACGATTTCGTGAG
TAGATGTGAGCCAGGGTATGAGGGGATTTGGACGAGGGGCCGGGGAAGGG
GTTGA
back to top

protein sequence of rna6891

>rna6891-protein ID=rna6891-protein|Name=rna6891|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
AVVLLFPLPPPSSSSSSSSSSSSSSSSPPASSTTALLESSLLPVLALRPP
VPSLLLLLSQHLPFLLAHTTRPFFLSTVLPPCLLLPLEIDLPPLQDQALK
HLADPHIHAVLGHARMLEEVLPRLGRLLVQTPHVSLRVNGLVCLAKTLPC
YRKKVR
back to top

mRNA from alignment at CM002469.1:727785..728565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6891 ID=rna6891|Name=rna6891|organism=Nannochloropsis gaditana|type=mRNA|length=781bp|location=Sequence derived from alignment at CM002469.1:727785..728565- (Nannochloropsis gaditana)
GCCGTCGTCCTCCTCTTCCCCCTCCCCCCACCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCCTCCCGCCTCCTCCACCA
CGGCGCTGCTCGAATCCTCCCTCCTCCCCGTGCTCGCCCTCCGCCCCCCC
GTCCCCTCCCTCCTCCTCCTCCTCAGCCAGCACCTCCCCTTCCTCCTCGC
CCACACCACGCGCCCCTTCTTCCTCTCCACCGTCCTCCCCCCCTGCCTCC
TCCTCCCCCTCGAAATCGACCTCCCCCCCCTCCAAGATCAGGCCCTCAAG
CACCTCGCCGATCCCCACATCCACGCCGTCCTTGGCCACGCCCGCATGCT
GGAGGAGGTTCTTCCCCGCCTCGGCCGCCTCCTGGTGCAGACTCCTCACG
TCTCCCTCCGCGTTAATGGCCTTGTTTGTCTCGCCAAGACTTTGCCCTGC
TACAGGAAGAAGGTGAGGTAGTCTTGACCCTCCTCTTGCGTGCCACGTAC
GTGTCGACGTGTACCCGAAGCGGACCAATTTTCATAAAGATTTTGGTTAC
TCGTGCCGTAAATTGCAACCCTTACGAGTCTCTGCACCCTCCTATCGCCG
CCTCCCTCCCCCTTGTCTTCCCCTGCATCTCCCTGCCCCTCCTTCCTCCC
CTCCCTCGACCAGGTCCTCTCCGAGGCCCTCCTACCCACACTCCGCGTCT
GTCTGGAGAAAGACCGAGCCCCTCCCGTCGTCATGGCGGCCGTCGCCTGC
TACGACCTCATTCTCAAAGAAGTGGGCGACG
back to top

Coding sequence (CDS) from alignment at CM002469.1:727785..728565-

>rna6891 ID=rna6891|Name=rna6891|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at CM002469.1:727785..728565- (Nannochloropsis gaditana)
GCCGTCGTCCTCCTCTTCCCCCTCCCCCCACCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCCTCCCGCCTCCTCCACCA
CGGCGCTGCTCGAATCCTCCCTCCTCCCCGTGCTCGCCCTCCGCCCCCCC
GTCCCCTCCCTCCTCCTCCTCCTCAGCCAGCACCTCCCCTTCCTCCTCGC
CCACACCACGCGCCCCTTCTTCCTCTCCACCGTCCTCCCCCCCTGCCTCC
TCCTCCCCCTCGAAATCGACCTCCCCCCCCTCCAAGATCAGGCCCTCAAG
CACCTCGCCGATCCCCACATCCACGCCGTCCTTGGCCACGCCCGCATGCT
GGAGGAGGTTCTTCCCCGCCTCGGCCGCCTCCTGGTGCAGACTCCTCACG
TCTCCCTCCGCGTTAATGGCCTTGTTTGTCTCGCCAAGACTTTGCCCTGC
TACAGGAAGAAGGTGAGGTAG
back to top
Synonyms
Publications