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Properties
| Property Name | Value |
|---|
| Product | ubiquitin-conjugating enzyme e2 |
| Orig transcript id | gnl|cribi|Naga_100276g2.9385.mrna |
| Orig protein id | gnl|cribi|Naga_100276g2.9385 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:167984..169858 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna689 ID=rna689|Name=rna689|organism=Nannochloropsis gaditana|type=mRNA|length=1512bp
GTTTGGTGGCAAAAGCTTAAGGGAATTATCTTCGGCATGAGATTTGGTCG
GGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACTTTGCCTTGTCTGTG
AGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAACAGGCGCCCGTTCA
AAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTCCGGGGAGAAGAAGT
TGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGCAGCTTGGGTCCGGT
GGGTTAATGCATACGTACGCGTCTTGGGGGTGGGAGGAGGCTTTGATAAT
ACAATGCTCAAAGGGTAAATGCGAGCATGGTTTAGTTCTGTGTTTTAAAG
AGAGAACATGCATGCTCAGAAATCAGGGAAAAGTGGGCATCTTGTTTCAC
TGATGGGAATTGGTAGGGAGTCACTTAAGCGCTTAGTCGTCCTGTCTTAC
AGGAAAAAAGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCA
AAAAGGCAAAAGCCGCAAGGCAAACAAGAATTCCCCCCGCCCCCCCGTCT
TCACGGCCCGCATCGCGATCTTGGGCAGTCCAAGCGAAGAGTGGGGACAA
GGCGTGCGGGAACGTCTCATAAGCGAAGGTTGGATGGAGGAGCGCGTTCA
AGTTCTACCGATCCCCTCCCCGCAAGCATATCCAGAGGCGAAATGGATGG
CATATCTACGGGAGGGACTCAAGTTGCGCAATACAACCTTCGTCATTGCC
GCTCCCGGCCCCGCCGTGGGTCAGGTCCTTCGCTTCCTGGAAAAGCACCC
TCTGAGGGGGAGCATACTGCTTGGACCTGAGGCCAGCTCTGACACCCGGT
CGTGGGACTACAAGAGGTTGCGGCAGCACTGCCCTTTCTTCGGTTTGATT
TACGCCATGGAGGGCGAAGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGA
CAGGGAGGGCGCGAGAGGTAGGGGTCGGCAAGGTTGGCTGTAAAAGTCGA
ATAGGAAGGAGACTGCATGGGGTTGAGGAATACCCGCACGGCTGAGAGGA
ATGCTGTAAAAAAGAGGTAGCAATGGCACGACTCTTTCCTAGCCGTGATA
TCTGCGGGGGACTTGGCATGATTACCCATTTTCCGCTCATCGTGGCTTTG
TCATCTCTTTCATCGCCGCCCCTCCCTCTGATCTCATTCTAGGTGGAGGC
CATCAGCGACTGCTGAGGAGGTTCGAGAGGGCCTTGGTCTCGCTCCTTAC
CCGTTCGGCATTCGCGCTACTCCCCCAGGCCAGGAAATCAGAGCGATTCA
GGCCCTCATCCGTGATTGGCAGTTCTTAGAGTCGCTGGGTATGGGTCCGA
TCCAGCTCGTCGGCGAGGACGAGGATGAGGAAAGGGAGAGGACAGGGCGA
GATATCCCACCGATGGAGGAGGGGAACGCGTGATGGAGATTGACAAAGGA
CGTGAAGGGATTAGAGAAATTACGTGTATAGACAAATATAAATAAAAGTG
TTCAAGCTTGAG back to topprotein sequence of rna689 >rna689-protein ID=rna689-protein|Name=rna689|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEG
GTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIY
DVSAILTSIQSLLCDPNPASPANSEASRLYQVPPPSPPFSLPPSILSLFL
PPLAACSSFAFFVALGASDLYASLSRCFRPAAFTSVETIPSLSSHKIWHP
NVFPVPCIRPAMPFTPYLLDFPVHTLAGQPPGVQPPGEGGGGAELDR back to topmRNA from alignment at CM002456.1:167984..169858+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna689 ID=rna689|Name=rna689|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002456.1:167984..169858+ (Nannochloropsis gaditana)
CACACTCAGACACGCAGCGCAACCAAAAACGCCGGAATTGAGTTCATAGC
CCCAAAAAAGTAATGTCCactgccgcccgccgccgcctgaTGCGAGACTT
AAAACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGG
ACAACAATGTAGGTGTTGTGGATGAGGATTGCACGTGATTATGTGGAAGC
CCTCTGCGAGAGAGTGACCCGTCCCAATGAGATGAGGATTCAACTTGGAT
ACACGCTTAGCTTCCTGCATCCACTTCTCATCAGATCATGACCTGGCAAG
CAGTCATCTTCGGGCCAGATGACACgccatgggagggaggcaccttCAAA
CTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGTAGGAGAAGTCTT
GGGACGGAGGCAAGGTCTCCAAGCACGTCCGCAGCTGCGAAATGCACATA
TTTTTTTGCACGCGATGACCTTTGCCAAATATGAAGAGTTCCCAATACTT
TTtccatctccctttccctcccgtgccTTGGTGGCTGTGAAGGCGCCTGC
CGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTACAACGACGGGC
AGATCTGTCTAGGTAAGTCTTCgcggggaagcgagggagggttcTGTGTC
TGGGCGGAGTCAGTACGCGGCGTGGGGCGAGGCCAGTGTGGGAGTACGTA
ACGGCTTAGCGTGCGTCCGAATACACATATATTTaattatatatatatat
atcgtttctcaccctctcctcttccggtAGATATACTGCAGAATCAGTGG
AGCCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCT
TTGTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGT
ACCAGgtaccgcctccctccccccctttctccctccctccgtcaatcctg
tccctctttctcccgcccctcgcggCTTGCTCGTCCTTTGCATTTTTCGT
CGCGCTTGGAGCTTCCGATCTGTATGCCTCCCTTTCACGTTGCTTCCGCC
CCGCAGCCTTTACATCTGTCGAGAcgattccttccctttcttcacaCAAA
ATATGGCACCCGAATGTGTTTCCTGTGCCATGCATCCGTCCTGCAATGCC
ATTCACGCCTTACTTACTCGATTTCCCGGTCCACACTTTGGCAGGACAAC
CGCCGGGAGTACAACCGCcgggtgaaggaggtggtggagcagAGCTGGAT
CGctgacgacgacgatgacgatgaggatgaagatgaggagggggaagagg
aggagggggcggagaaagagaaagggggggcggcggggggtgGAGGTCAG
gcatgaagagagggatCGTGAGAGAGTTGACAAGGGCCGATTTTCCGATG
GATGTAGGGAGGTGATGAAGGAGTGAGGTGTGTGAATGGAGGAGTATGGA
AGCTGATAGTATTTGTGCGGGCGACAAAGGCCAGGAAGGTGTCGAGGGac
tgagggagagaaggagggtgctTTCAGTCGCACGGTTCGTCCCCCTATAC
TTGCCTTCTGATCGTGCTGGTGGCAGATGCACTGAGTCATGGACCTCAGT
CACGTGTCCACGGTAGCAATGTCGTTTCTCAAATGCAGGGCGCAATGTCA
TGCGAAGATTTCGGGAAAGAGCCCCCCTTTAACCAGCCGGGGAGCTGGAT
GCGGAAAGCACTGCCTCCTTGTGGTGAATGTACATACAAACACAAGTAGG
AGACCGCGATAAAGCGATGGAAGCAAAGAGGGATATGGTTGGAAGAAAGG
GCTTGTGCCCGCATGTGTCGTTTCAAGTGCAACCTCCTTGTTATTCCTTC
ATGCGCAAGCAATCGCGACCTGCTA back to topCoding sequence (CDS) from alignment at CM002456.1:167984..169858+ >rna689 ID=rna689|Name=rna689|organism=Nannochloropsis gaditana|type=CDS|length=2976bp|location=Sequence derived from alignment at CM002456.1:167984..169858+ (Nannochloropsis gaditana)
ATGTCCactgccgcccgccgccgcctgaTGCGAGACTTAAAACGGCTGCA
AAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGGACAACAATATCA
TGACCTGGCAAGCAGTCATCTTCGGGCCAGATGACACgccatgggaggga
ggcaccttCAAACTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGC
GCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTACAACG
ACGGGCAGATCTGTCTAGATATACTGCAGAATCAGTGGAGCCCCATCTAC
GACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCTTTGTGACCCTAA
CCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGTACCAGgtaccgc
ctccctccccccctttctccctccctccgtcaatcctgtccctctttctc
ccgcccctcgcggCTTGCTCGTCCTTTGCATTTTTCGTCGCGCTTGGAGC
TTCCGATCTGTATGCCTCCCTTTCACGTTGCTTCCGCCCCGCAGCCTTTA
CATCTGTCGAGAcgattccttccctttcttcacaCAAAATATGGCACCCG
AATGTGTTTCCTGTGCCATGCATCCGTCCTGCAATGCCATTCACGCCTTA
CTTACTCGATTTCCCGGTCCACACTTTGGCAGGACAACCGCCGGGAGTAC
AACCGCcgggtgaaggaggtggtggagcagAGCTGGATCGctgaATGTCC
actgccgcccgccgccgcctgaTGCGAGACTTAAAACGGCTGCAAAGCGA
TCCACCACAGGGGGTGCAGGGCGCTCCGCTGGACAACAATATCATGACCT
GGCAAGCAGTCATCTTCGGGCCAGATGACACgccatgggagggaggcacc
ttCAAACTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGCGCCTGC
CGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTACAACGACGGGC
AGATCTGTCTAGATATACTGCAGAATCAGTGGAGCCCCATCTACGACGTG
TCGGCCATCCTCACCTCCATTCAATCCCTCCTTTGTGACCCTAACCCTGC
TTCCCCTGCCAACAGCGAGGCTTCCCGCCTGTACCAGgtaccgcctccct
ccccccctttctccctccctccgtcaatcctgtccctctttctcccgccc
ctcgcggCTTGCTCGTCCTTTGCATTTTTCGTCGCGCTTGGAGCTTCCGA
TCTGTATGCCTCCCTTTCACGTTGCTTCCGCCCCGCAGCCTTTACATCTG
TCGAGAcgattccttccctttcttcacaCAAAATATGGCACCCGAATGTG
TTTCCTGTGCCATGCATCCGTCCTGCAATGCCATTCACGCCTTACTTACT
CGATTTCCCGGTCCACACTTTGGCAGGACAACCGCCGGGAGTACAACCGC
cgggtgaaggaggtggtggagcagAGCTGGATCGctgaATGTCCactgcc
gcccgccgccgcctgaTGCGAGACTTAAAACGGCTGCAAAGCGATCCACC
ACAGGGGGTGCAGGGCGCTCCGCTGGACAACAATATCATGACCTGGCAAG
CAGTCATCTTCGGGCCAGATGACACgccatgggagggaggcaccttCAAA
CTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGCGCCTGCCGTGCG
CTTCGTGACCAAAATGTTCCACCCGAATATCTACAACGACGGGCAGATCT
GTCTAGATATACTGCAGAATCAGTGGAGCCCCATCTACGACGTGTCGGCC
ATCCTCACCTCCATTCAATCCCTCCTTTGTGACCCTAACCCTGCTTCCCC
TGCCAACAGCGAGGCTTCCCGCCTGTACCAGgtaccgcctccctcccccc
ctttctccctccctccgtcaatcctgtccctctttctcccgcccctcgcg
gCTTGCTCGTCCTTTGCATTTTTCGTCGCGCTTGGAGCTTCCGATCTGTA
TGCCTCCCTTTCACGTTGCTTCCGCCCCGCAGCCTTTACATCTGTCGAGA
cgattccttccctttcttcacaCAAAATATGGCACCCGAATGTGTTTCCT
GTGCCATGCATCCGTCCTGCAATGCCATTCACGCCTTACTTACTCGATTT
CCCGGTCCACACTTTGGCAGGACAACCGCCGGGAGTACAACCGCcgggtg
aaggaggtggtggagcagAGCTGGATCGctgaATGTCCactgccgcccgc
cgccgcctgaTGCGAGACTTAAAACGGCTGCAAAGCGATCCACCACAGGG
GGTGCAGGGCGCTCCGCTGGACAACAATATCATGACCTGGCAAGCAGTCA
TCTTCGGGCCAGATGACACgccatgggagggaggcaccttCAAACTGCTT
CTCGAGTTCACGGAAGACTATCCGAACAAGGCGCCTGCCGTGCGCTTCGT
GACCAAAATGTTCCACCCGAATATCTACAACGACGGGCAGATCTGTCTAG
ATATACTGCAGAATCAGTGGAGCCCCATCTACGACGTGTCGGCCATCCTC
ACCTCCATTCAATCCCTCCTTTGTGACCCTAACCCTGCTTCCCCTGCCAA
CAGCGAGGCTTCCCGCCTGTACCAGgtaccgcctccctccccccctttct
ccctccctccgtcaatcctgtccctctttctcccgcccctcgcggCTTGC
TCGTCCTTTGCATTTTTCGTCGCGCTTGGAGCTTCCGATCTGTATGCCTC
CCTTTCACGTTGCTTCCGCCCCGCAGCCTTTACATCTGTCGAGAcgattc
cttccctttcttcacaCAAAATATGGCACCCGAATGTGTTTCCTGTGCCA
TGCATCCGTCCTGCAATGCCATTCACGCCTTACTTACTCGATTTCCCGGT
CCACACTTTGGCAGGACAACCGCCGGGAGTACAACCGCcgggtgaaggag
gtggtggagcagAGCTGGATCGctga back to top
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