EWM29984.1, cds689 (CDS) Nannochloropsis gaditana

Overview
NameEWM29984.1
Unique Namecds689
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:168046..168141 +
Alignment locationCM002456.1:168268..168369 +
Alignment locationCM002456.1:168526..168595 +
Alignment locationCM002456.1:168764..169239 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29984.1
Productubiquitin-conjugating enzyme e2
Orig transcript idgnl|cribi|Naga_100276g2.9385.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:168046..168141 +
CM002456.1supercontigCM002456.1:168268..168369 +
CM002456.1supercontigCM002456.1:168526..168595 +
CM002456.1supercontigCM002456.1:168764..169239 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|585112592|gb|EWM29984.1| (ubiquitin-conjugating enzyme e2 [Nannochloropsis gaditana])

HSP 1 Score: 501.901 bits (1291), Expect = 1.050e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQVPPPSPPFSLPPSILSLFLPPLAACSSFAFFVALGASDLYASLSRCFRPAAFTSVETIPSLSSHKIWHPNVFPVPCIRPAMPFTPYLLDFPVHTLAGQPPGVQPPGEGGGGAELDR 247
            MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQVPPPSPPFSLPPSILSLFLPPLAACSSFAFFVALGASDLYASLSRCFRPAAFTSVETIPSLSSHKIWHPNVFPVPCIRPAMPFTPYLLDFPVHTLAGQPPGVQPPGEGGGGAELDR
Sbjct:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQVPPPSPPFSLPPSILSLFLPPLAACSSFAFFVALGASDLYASLSRCFRPAAFTSVETIPSLSSHKIWHPNVFPVPCIRPAMPFTPYLLDFPVHTLAGQPPGVQPPGEGGGGAELDR 247
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|585112591|gb|EWM29983.1| (ubiquitin-conjugating enzyme e2 [Nannochloropsis gaditana])

HSP 1 Score: 278.485 bits (711), Expect = 3.095e-92
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ
Sbjct:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|219117213|ref|XP_002179401.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409292|gb|EEC49224.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 253.832 bits (647), Expect = 5.938e-83
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLY 130
            MST+ARRRL+RD KRLQ+DPP GV GAP+D NIM WQAVIFGPDDTPWEGGTFKL+LEFTEDYPNKAP VRF+TKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNPASPANSEASRLY
Sbjct:    1 MSTSARRRLLRDFKRLQNDPPTGVTGAPMDTNIMMWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPQVRFLTKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLY 130
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|669165308|ref|XP_008618216.1| (ubiquitin-conjugating enzyme E2 2 [Saprolegnia diclina VS20] >gi|813127415|ref|XP_012197338.1| ubiquitin-conjugating enzyme E2 2 [Saprolegnia parasitica CBS 223.65] >gi|530730104|gb|EQC28346.1| ubiquitin-conjugating enzyme E2 2 [Saprolegnia diclina VS20] >gi|641538320|gb|KDO32154.1| ubiquitin-conjugating enzyme E2 2 [Saprolegnia parasitica CBS 223.65] >gi|1173934650|gb|OQR85920.1| ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 253.447 bits (646), Expect = 6.136e-83
Identity = 116/131 (88.55%), Postives = 125/131 (95.42%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP GV GAPLDNNIM WQAVIFGPDDTPWEGGTF LLLEF+EDYPNKAP+V+FVTKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:    1 MSTAARRRLMRDFRKLQNDPPSGVSGAPLDNNIMVWQAVIFGPDDTPWEGGTFNLLLEFSEDYPNKAPSVKFVTKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 131
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|673050649|ref|XP_008879285.1| (ubiquitin-conjugating enzyme E2 2 [Aphanomyces invadans] >gi|574465082|gb|ETV92123.1| ubiquitin-conjugating enzyme E2 2 [Aphanomyces invadans])

HSP 1 Score: 253.447 bits (646), Expect = 7.310e-83
Identity = 116/131 (88.55%), Postives = 125/131 (95.42%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP GV GAPLDNNIM WQAVIFGPDDTPWEGGTF LLLEF+EDYPNKAP+V+FVTKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:    1 MSTAARRRLMRDFRKLQNDPPSGVSGAPLDNNIMVWQAVIFGPDDTPWEGGTFNLLLEFSEDYPNKAPSVKFVTKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 131
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|698822777|ref|XP_009844417.1| (ubiquitin-conjugating enzyme E2 2 [Aphanomyces astaci] >gi|574100510|gb|ETV66088.1| ubiquitin-conjugating enzyme E2 2 [Aphanomyces astaci])

HSP 1 Score: 253.447 bits (646), Expect = 8.066e-83
Identity = 116/131 (88.55%), Postives = 125/131 (95.42%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP GV GAPLDNNIM WQAVIFGPDDTPWEGGTF LLLEF+EDYPNKAP+V+FVTKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:    1 MSTAARRRLMRDFRKLQNDPPSGVSGAPLDNNIMVWQAVIFGPDDTPWEGGTFNLLLEFSEDYPNKAPSVKFVTKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 131
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|1072237295|gb|OEU22022.1| (ubiquitin conjugating protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 253.062 bits (645), Expect = 1.049e-82
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLY 130
            MST+ARRRL+RD KRLQ+DPP GV GAP+D NIM WQAVIFGPDDTPWEGGTFKL+LEFTEDYPNKAP VRF+TKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNPASPANSEASRLY
Sbjct:    1 MSTSARRRLLRDFKRLQNDPPSGVTGAPMDTNIMLWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPQVRFLTKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLY 130
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|301098810|ref|XP_002898497.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|675199543|ref|XP_008908656.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica INRA-310] >gi|695431189|ref|XP_009530621.1| hypothetical protein PHYSODRAFT_354949 [Phytophthora sojae] >gi|262104922|gb|EEY62974.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|348673373|gb|EGZ13192.1| hypothetical protein PHYSODRAFT_354949 [Phytophthora sojae] >gi|566019607|gb|ETI42518.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica P1569] >gi|567956930|gb|ETK82542.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica] >gi|567985589|gb|ETL35928.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica] >gi|568014984|gb|ETL89161.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica] >gi|568045261|gb|ETM42417.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica] >gi|568091330|gb|ETN06154.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica INRA-310] >gi|570323207|gb|ETO71155.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica P1976] >gi|570946977|gb|ETP12234.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica CJ01A1] >gi|570979426|gb|ETP40363.1| ubiquitin-conjugating enzyme E2 2 [Phytophthora parasitica P10297] >gi|953495256|emb|CEG43163.1| ubiquitin-conjugating enzyme e2 2 [Plasmopara halstedii] >gi|970628450|gb|KUF76070.1| Ubiquitin-conjugating enzyme E2 2 [Phytophthora nicotianae] >gi|970658993|gb|KUF96692.1| BEL1 homeodomain protein 8 [Phytophthora nicotianae] >gi|1214695860|gb|OWZ09529.1| Ubiquitin-conjugating enzyme E2 2 [Phytophthora megakarya])

HSP 1 Score: 249.21 bits (635), Expect = 3.014e-81
Identity = 113/131 (86.26%), Postives = 123/131 (93.89%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP GV GAP+DNNIM WQAVIFGPDDTPWEGGTF L LEF+EDYPNKAP V+F+TKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:    1 MSTAARRRLMRDFRKLQNDPPSGVSGAPMDNNIMLWQAVIFGPDDTPWEGGTFNLTLEFSEDYPNKAPTVKFITKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 131
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|325187842|emb|CCA22385.1| (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 248.44 bits (633), Expect = 1.416e-80
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP G+ GAP+DNNIM WQAVIFGPDDTPWEGGTF L LEF+EDYPNKAP V+F+TKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:   19 MSTAARRRLMRDFRKLQNDPPCGISGAPMDNNIMMWQAVIFGPDDTPWEGGTFNLTLEFSEDYPNKAPTVKFITKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 149
[Close]
BLAST of EWM29984.1 vs. NCBI_GenBank
Match: gi|635364078|emb|CCI47442.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 247.669 bits (631), Expect = 1.456e-80
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQ 131
            MSTAARRRLMRD ++LQ+DPP G+ GAP+DNNIM WQAVIFGPDDTPWEGGTF L LEF+EDYPNKAP V+F+TKMFHPNIYNDGQICLDILQNQWSPIYD+SAILTSIQSLLCDPNP SPANSEA+RL+Q
Sbjct:    1 MSTAARRRLMRDFRKLQNDPPCGISGAPMDNNIMMWQAVIFGPDDTPWEGGTFNLTLEFSEDYPNKAPTVKFITKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQ 131
The following BLAST results are available for this feature:
BLAST of EWM29984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112592|gb|EWM29984.1|1.050e-179100.00ubiquitin-conjugating enzyme e2 [Nannochloropsis g... [more]
gi|585112591|gb|EWM29983.1|3.095e-92100.00ubiquitin-conjugating enzyme e2 [Nannochloropsis g... [more]
gi|219117213|ref|XP_002179401.1|5.938e-8390.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|669165308|ref|XP_008618216.1|6.136e-8388.55ubiquitin-conjugating enzyme E2 2 [Saprolegnia dic... [more]
gi|673050649|ref|XP_008879285.1|7.310e-8388.55ubiquitin-conjugating enzyme E2 2 [Aphanomyces inv... [more]
gi|698822777|ref|XP_009844417.1|8.066e-8388.55ubiquitin-conjugating enzyme E2 2 [Aphanomyces ast... [more]
gi|1072237295|gb|OEU22022.1|1.049e-8290.00ubiquitin conjugating protein [Fragilariopsis cyli... [more]
gi|301098810|ref|XP_002898497.1|3.014e-8186.26ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|325187842|emb|CCA22385.1|1.416e-8085.50ubiquitinconjugating enzyme E2 putative [Albugo la... [more]
gi|635364078|emb|CCI47442.1|1.456e-8085.50unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna689rna689Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications