rna6885, rna6885 (mRNA) Nannochloropsis gaditana

Overview
Namerna6885
Unique Namerna6885
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002469.1:712793..713958 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102056g1.7814.mrna
Orig protein idgnl|cribi|Naga_102056g1.7814
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:712793..713958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102056g1gene6655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6885rna6885-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23804.1cds6869Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6885 ID=rna6885|Name=rna6885|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
CATGGTTCGGATCCGCTCTGTCTTCCTTGTGCTCGGCATCATCACGGCCT
TCGCAGTCACGCCCGTTCCATATCTTCCCCGGCCTTTGGACCACATGAAC
GGTGGTTAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGGGGAGGTCTGGGACTGTCGTGTATCTGGTGCGGAGGATTCCTTCACT
TGTTTGTGCGAAGTCGAACGGTTGCGCTCTCCATTCTGCCCAAGGCATAT
GTGTCTCACTCATCCTCCCTCCCTCCCTCTCTCCCTCCCTCATCCTCCCC
TCTCGCTCGCTGCCACAGCCCTTGACCCCCCTGCCTCCACCTCCCCCTCG
ACCTACTTCGCTTGAGCCCTGCCCCTGAACGACGCCTTTTGTAAAGTCTT
CGTATAGTCTACCGAACGTCCACCCTTTGTGTGCATATCAGTCATTTTTC
ACGTCTCGTGGAGCTCGCGCTCCGCCCGCCCTGCTTGGAAAATGCCCTGC
TTCCCACCTTGCCATTTCTGAGTTATTTTTGGCTCGCGTGGGCTCCGCCT
GTATTTCTTGGTTGTTTTCCCCATCCTCCCGCATTCGCCCTTGCTATCTG
GAGGAAAAGCATACGACGACATAGTCAGATTGATTCAAGAAAAATGCAGG
CGTAGGACCTGAAATGTGTTGAAAATCCGCTAGTTAAGGCTCGAAAGCAA
TTAAGCTACATTGGACAAAGTAAGTTGGGTTAGGAAAAAAGCAGAAGTCA
TAAAAGCAAGCATTGATCGAAAAACGTACCCGGAGGGAC
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protein sequence of rna6885

>rna6885-protein ID=rna6885-protein|Name=rna6885|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MLASWRAMGIEIPMAYSISIKGDNTSYLNTPYLRHFIPNASLAQAVTQEE
HVVPFHKWARVIAPEYRALFIEKMVENIYEGSSGAEGREITRGGGGIRGG
RGRGGGEGGGGGGEGGAESSMIAKVGL
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mRNA from alignment at CM002469.1:712793..713958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6885 ID=rna6885|Name=rna6885|organism=Nannochloropsis gaditana|type=mRNA|length=1166bp|location=Sequence derived from alignment at CM002469.1:712793..713958- (Nannochloropsis gaditana)
AGCGGCCGACTCCCTCGTCGCCAGCATGCTCGCGTCGTGGCGGGCAATGG
GCATAGAGATCCCCATGGCGTACTCCATCTCCATTAAGGGCGACAACACC
AGCTATTTAAACACGGTAAGATCCACCTCCCTTCCCTCCCTCTCACATCT
CACCCCCCCGTCCCTCCCTCCCTCTCACCCGCCCGCCTTCCCTCTCGCCC
ACTTTCCCTCCTCAGTCTTGTTGCCTTCGCCCTTCTCAACCCGATGCTTC
CCGCCTCCAGCCCCCCTTCCGAATATCCAGCTCATTGTCCCCCCTTTCTC
CTTTTCCCCTCCTTTTTCTCAGCCCTACCTGCGGCATTTCATCCCCAACG
CCTCTTTGGCCCAAGCCGTGACTCAGGAGGAGCATGTTGTCCCTTTCCAT
AAGTGGGCCAGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGACGGATGATTTGTGCTAGAGATAGTGGTGTGATTTTTCTCGTGCTA
CGGAACCGTGGCTCTCAAGAGGGACGCGCTTCCTCGCTCTCCTTCCCTCT
CTCACCCTCCCTTCCCTCCCTTTCCCCGGCACCACCTCCCTGAAACCCTT
TCCTTTCTGTGGCAGAGTGATAGCTCCTGAATATCGAGCCCTTTTTATCG
AGAAGATGGTTGAAAACATTTATGAAGGCTCTTCAGGGGCAGAAGGGAGA
GAAATAACGAGGGGGGGAGGAGGCATTCGTGGAGGACGGGGAAGGGGAGG
AGGGGAAGGAGGAGGAGGAGGAGGAGAGGGAGGGGCAGAGTCGTCGATGA
TTGCAAAGGTAGGTTTATGACGCGGCAGAATAAGACGAGGAGAGAGGGGG
GGTGGGGGAGGAAGGGAGGGAGGAGGGTACGAAGCTGCACTGAGTCGTTG
TCCTTTGATCCTGTGCTATCGGTGCGGTGCATCACTTCTCTAGGTACCAC
TTTGAAACTCTTGTCGATACTCTTTGAAACATTTGTCGATACTCTTTGAA
ACACTTGTCGATACTCTTTGAAACACTTGTCGATACTCTTTGAAACACTT
TTCGATACTCTTTCCCTTCTGTGTAAGCTTGCCTGCCCTCACCACCTTTG
AAGACGACTTGATTCTGGTGCCCACAGCTCTCTCTCCCTCTGTCCCTCCC
TTCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at CM002469.1:712793..713958-

>rna6885 ID=rna6885|Name=rna6885|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002469.1:712793..713958- (Nannochloropsis gaditana)
AGTGATAGCTCCTGAATATCGAGCCCTTTTTATCGAGAAGATGGTTGAAA
ACATTTATGAAGGCTCTTCAGGGGCAGAAGGGAGAGAAATAACGAGGGGG
GGAGGAGGCATTCGTGGAGGACGGGGAAGGGGAGGAGGGGAAGGAGGAGG
AGGAGGAGGAGAGGGAGGGGCAGAGTCGTCGATGATTGCAAAGGTAGGTT
TATGACCCTACCTGCGGCATTTCATCCCCAACGCCTCTTTGGCCCAAGCC
GTGACTCAGGAGGAGCATGTTGTCCCTTTCCATAAGTGGGCCAGATGCTC
GCGTCGTGGCGGGCAATGGGCATAGAGATCCCCATGGCGTACTCCATCTC
CATTAAGGGCGACAACACCAGCTATTTAAACACGAGTGATAGCTCCTGAA
TATCGAGCCCTTTTTATCGAGAAGATGGTTGAAAACATTTATGAAGGCTC
TTCAGGGGCAGAAGGGAGAGAAATAACGAGGGGGGGAGGAGGCATTCGTG
GAGGACGGGGAAGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGAGGGA
GGGGCAGAGTCGTCGATGATTGCAAAGGTAGGTTTATGACCCTACCTGCG
GCATTTCATCCCCAACGCCTCTTTGGCCCAAGCCGTGACTCAGGAGGAGC
ATGTTGTCCCTTTCCATAAGTGGGCCAGATGCTCGCGTCGTGGCGGGCAA
TGGGCATAGAGATCCCCATGGCGTACTCCATCTCCATTAAGGGCGACAAC
ACCAGCTATTTAAACACGAGTGATAGCTCCTGAATATCGAGCCCTTTTTA
TCGAGAAGATGGTTGAAAACATTTATGAAGGCTCTTCAGGGGCAGAAGGG
AGAGAAATAACGAGGGGGGGAGGAGGCATTCGTGGAGGACGGGGAAGGGG
AGGAGGGGAAGGAGGAGGAGGAGGAGGAGAGGGAGGGGCAGAGTCGTCGA
TGATTGCAAAGGTAGGTTTATGACCCTACCTGCGGCATTTCATCCCCAAC
GCCTCTTTGGCCCAAGCCGTGACTCAGGAGGAGCATGTTGTCCCTTTCCA
TAAGTGGGCCAGATGCTCGCGTCGTGGCGGGCAATGGGCATAGAGATCCC
CATGGCGTACTCCATCTCCATTAAGGGCGACAACACCAGCTATTTAAACA
CG
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Synonyms
Publications