EWM23804.1, cds6869 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23804.1
Unique Name	cds6869
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002469.1:713844..713933 -
Alignment location	CM002469.1:713548..713636 -
Alignment location	CM002469.1:713139..713343 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23804.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102056g1.7814.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:713844..713933 -
CM002469.1	supercontig	CM002469.1:713548..713636 -
CM002469.1	supercontig	CM002469.1:713139..713343 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23804.1 vs. NCBI_GenBank
Match: gi|585105046|gb|EWM23804.1| (hypothetical protein Naga_102056g1 [Nannochloropsis gaditana])

HSP 1 Score: 252.677 bits (644), Expect = 6.203e-85
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query:    1 MLASWRAMGIEIPMAYSISIKGDNTSYLNTPYLRHFIPNASLAQAVTQEEHVVPFHKWARVIAPEYRALFIEKMVENIYEGSSGAEGREITRGGGGIRGGRGRGGGEGGGGGGEGGAESSMIAKVGL 127
            MLASWRAMGIEIPMAYSISIKGDNTSYLNTPYLRHFIPNASLAQAVTQEEHVVPFHKWARVIAPEYRALFIEKMVENIYEGSSGAEGREITRGGGGIRGGRGRGGGEGGGGGGEGGAESSMIAKVGL
Sbjct:    1 MLASWRAMGIEIPMAYSISIKGDNTSYLNTPYLRHFIPNASLAQAVTQEEHVVPFHKWARVIAPEYRALFIEKMVENIYEGSSGAEGREITRGGGGIRGGRGRGGGEGGGGGGEGGAESSMIAKVGL 127

The following BLAST results are available for this feature:

BLAST of EWM23804.1 vs. NCBI_GenBank

BLAST of EWM23804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585105046\|gb\|EWM23804.1\|	6.203e-85	100.00	hypothetical protein Naga_102056g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6885	rna6885	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications