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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101274g2.5039.mrna |
| Orig protein id | gnl|cribi|Naga_101274g2.5039 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:710814..712691 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6883 ID=rna6883|Name=rna6883|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp
CTTACTTCAACTAACAAAGAATGCGCCGTCAGCCCAGTCGATGAGATGTC
CATGAGTATCTTATATTACTTCCACAAAAATGTACGTTTTTGGTGTGAGA
AGGGCCTCTGAGCTGGAAAATATTGTCTAGGTGCTTTTTTAGGAAAAGGT
TGCGGGGAGGTTAACCATGCCGCCCGCCCAAGGATCAAGGGGGTTCAAGC
GGGTATAGTCCAAACCGAAATGGAGGACAAACAAGACTTCAGGTTATGAT
TTGATTCATCTTAAACATATAATCTTACACGTTTCTCTTGTTTCTTTCTT
GTCGCACGATTTGAATGAGTTTCCGGCTTGCCTGATTTGTCCTTTCTCAG
AATCAAGGCGCAACACGTTAAGATGTCTCCCAATGCGCTTATCAAGTGCG
GTATAGACCTAAAACTTTTATGTCACACGACTTTCTTCTCTTTTCGGTGC
AATAGGCCAGCGACGACGAGGGGTCGTCCCAAGCCCAGATAGTATATATC
GTCACCGCCTTCTCACACTCAGCCTCCTCCCCTCCACGGACAGACGCAAT
TCTCATGCCACGCTCTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGG
CGACTTTTGGCTTTCTCCTTCCTACACCATCCCTTGTGCCAACCCCGTCT
TGTGGTCGTGGACGTACTTTCAGGTCTCCTTTCTTTTCCTCTTCCACATT
CGCCTCCTCTCCCTTGGTCCTCCAAGCTGCTGCCGACGACAGCGACGAGA
ATGGACAGAAAAAGAAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCT
CCCACTCCATTGAGCGACAATATGAGGCAGAAGCTCTTGAACGAGGCGAG
AGGGCAAGGGGCAGACTACAACACGAGCAACGGCAACCCTATCTTGCTCA
TCGCGGTGGTCATCGGTGTCTTGGTTGTCTTGGGAGGAAAAGGTTTTTTT
TACTAGCAAAATGTACGGGTTACTTCAAGAATGAGAAGTGTGTTTTTTTT
TTTCTTGATTATCGACATCGATTGGGCAAAACCTTTGCCATTCATCTTCA
TGGTGATACTGTCGACGATGTGCTCGAGCATTATTTACTTTGTTTAATAT
GCGACATTTAGGTGGAAAATCGCACGTGTGGAACGTTGATATGAAACACA
CAAGGATGAGAGGAAAGGAAATTGAAAATTAAACTTTCAGAAGGCAAAGA
AACGAGAAATTTCTCCGAGGCGCGAGTAGCAAAAAGCAGGAGCATCTGTA
GGGTCCCTCCGGCAAGGGCGAATGCGGGAGGATGGGGAAAACAACCAAGA
AATACAGGCGGAGCCCACGCGAGCCAAAAATAACTCAGAAATGGCAAGGT
GGGAAGCAGGGCATTTTCCAAGCAGGGCGGGCGGAGCGCGAGCTCCACGA
GACGTGAAAAATGACTGATATGCACACAAAGGGTGGACGTTCGGTAGACT
ATACGAAGACTTTACAAAAGGCGTCGTTCAGGGGCAGGGCTCAAGCGAAG
CCGGGGAAGATATGGAACGGGCGTGACTGCGAAGGCCGTGATGATGCCGA
GCACAAGGAAGACAGAGCGGATCCGAACCATGG back to topprotein sequence of rna6883 >rna6883-protein ID=rna6883-protein|Name=rna6883|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFA
SSPLVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARG
QGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY back to topmRNA from alignment at CM002469.1:710814..712691+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6883 ID=rna6883|Name=rna6883|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp|location=Sequence derived from alignment at CM002469.1:710814..712691+ (Nannochloropsis gaditana)
CCATGCCGCCCGCCCAAGGATCAAGGGGGTTCAAGCGGGTATAGTCCAAA
CCGAAATGGAGGACAAACAAGACTTCAGGTTATGATTTGATTCATCTTAA
ACATATAATCTTACACGTTTCTCTTGTTTCTTTCTTGTCGCACGATTTGA
ATGAGTTTCCGGCTTGCCTGATTTGTCCTTTCTCAGAATCAAGGCGCAAC
ACGTTAAGATGTCTCCCAATGCGCTTATCAAGTGCGGTATAGACCTAAAA
CTTTTATGTCACACgactttcttctcttttcggTGCAATAGGCcagcgac
gacgaggggTCGTCCCAAGCCCAGATAGTATATATCGTCACCGCCTTCTC
ACactcagcctcctcccctccacggaCAGACGCAATTCTCATGCCACGCT
CTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGGCGACTTttggcttt
ctccttcctacACCATCCCTTGTGCCAACCCCGTCTTGTGGTCGTGGACG
TACTTTCAggtctcctttcttttcctcttccacattcgcctcctctccct
tggtCCTCCAAGCTGCTGCCGACGACAGCGACGAGAATGGACAGAAAAAG
AAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCTCCCACTCCATTGAG
CGACAATATGAGGCAGAAGCTCTTGAACGAGgcgagagggcaaggggcag
ACTACAACACGAGCAACGGCAACCCTATCTTGCTCATCGCGGTGGTCATC
GGTGTCTTGGTTGTcttgggaggaaaaggtttTTTTTACTAGCAAAATGT
ACGGGTTACTTCAAGAATGAGAAgtgtgtttttttttttcttgattATCG
ACATCGATTGGGCAAAACCTTTGCCATTCATCTTCATGGTGATACTGTCG
ACGATGTGCTCGAGCATTATTTACTTTGTTTAATATGCGACATTTAGGTG
GAAAATCGCACGTGTGGAACGTTGATATGAAACACACAAggatgagagga
aaggaaattGAAAATTAAACTTTCAGAAGGCAAAGAAACGAGAAATTTCT
CCGAGGCGCGAGTAGCAAAAAGCAGGAGCATCTGTAGGGTCCCTCCGGGT
ACGTTTTTCGATCAATGCTTGCTTTTATGACTTCTGCTTTTTTCCTAACC
CAACTTACTTTGTCCAATGTAGCTTAATTGCTTTCGAGCCTTAACTAGCG
GATTTTCAACACATTTCAGGTCCTACGCCTGCATTTTTCTTGAATCAATC
TGACTATGTCGTCGTATGCTTTTCCTCCAGATAGCAAGGGCGAAtgcggg
aggatggggaaaaCAACCAAGAAATACAGGCGGAGCCCACGCGAGCCAAA
AATAACTCAGAAATGGCAAGGTGGGAAGCAGGGCATTTTCCaagcagggc
gggcggagcgCGAGCTCCACGAGACGTGAAAAATGACTGATATGCACACA
AAGGGTGGACGTTCGGTAGACTATACGAAGACTTTACAAAAGGCGTCGTT
CAGGGGCAGGGCTCAAGCGAAGtaggtcgagggggaggtggaggcagggg
ggtcAAGGGCTGTGGCAGCgagcgagaggggaggatgagggagggagaga
gggagggagggaggatgagtgAGACACATATGCCTTGGGCAGAATGGAGA
GCGCAACCGTTCGACTTCGCACAAACAAGTGAAGGAATCCTCCGCACCAG
ATACACGACAGTCCCAgacctccccatccctccctccctccctccctccc
tccctccctccctccttcctaacCACCGTTCATGTGGTCCAAAGGCCGGG
GAAGATATGGAACGGGCGTGACTGCGAAGGCCGTGATGATGCCGAGCACA
AGGAAGACAGAGCGGATCCGAACCATGG back to topCoding sequence (CDS) from alignment at CM002469.1:710814..712691+ >rna6883 ID=rna6883|Name=rna6883|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002469.1:710814..712691+ (Nannochloropsis gaditana)
ATGCCACGCTCTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGGCGAC
TTttggctttctccttcctacACCATCCCTTGTGCCAACCCCGTCTTGTG
GTCGTGGACGTACTTTCAggtctcctttcttttcctcttccacattcgcc
tcctctcccttggtCCTCCAAGCTGCTGCCGACGACAGCGACGAGAATGG
ACAGAAAAAGAAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCTCCCA
CTCCATTGAGCGACAATATGAGGCAGAAGCTCTTGAACGAGgcgagaggg
caaggggcagACTACAACACGAGCAACGGCAACCCTATCTTGCTCATCGC
GGTGGTCATCGGTGTCTTGGTTGTcttgggaggaaaaggtttTTTTTACT
AG back to top
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