EWM23807.1, cds6867 (CDS) Nannochloropsis gaditana

Overview
NameEWM23807.1
Unique Namecds6867
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:711204..711605 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23807.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101274g2.5039.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:711204..711605 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23807.1 vs. NCBI_GenBank
Match: gi|585105050|gb|EWM23807.1| (hypothetical protein Naga_101274g2 [Nannochloropsis gaditana] >gi|585105051|gb|EWM23808.1| hypothetical protein Naga_101274g2 [Nannochloropsis gaditana] >gi|585105052|gb|EWM23809.1| hypothetical protein Naga_101274g2 [Nannochloropsis gaditana])

HSP 1 Score: 268.855 bits (686), Expect = 4.065e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFASSPLVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
            MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFASSPLVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY
Sbjct:    1 MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFASSPLVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133          
BLAST of EWM23807.1 vs. NCBI_GenBank
Match: gi|298710214|emb|CBJ26289.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 3.002e-12
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   47 STFASSPLVLQAAADDSDENGQKKKITE---PARR--EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
             + A S   ++ A+D +DE      +TE   PA R  +MPP   +S++M+++L  E   QGAD N S GNPIL++A +I VLV++GG+G FY
Sbjct:   57 ESAAESEAEIRPASDKADE------VTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142          
BLAST of EWM23807.1 vs. NCBI_GenBank
Match: gi|873218080|emb|CEM40098.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 62.003 bits (149), Expect = 1.604e-9
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   86 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
            +S +M+++LL E  GQGA+ N S GNP L+I V+I  LV+LGGKG FY
Sbjct:  105 ISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152          
The following BLAST results are available for this feature:
BLAST of EWM23807.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105050|gb|EWM23807.1|4.065e-91100.00hypothetical protein Naga_101274g2 [Nannochloropsi... [more]
gi|298710214|emb|CBJ26289.1|3.002e-1242.39expressed unknown protein [Ectocarpus siliculosus][more]
gi|873218080|emb|CEM40098.1|1.604e-956.25unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6883rna6883Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications