rna6880, rna6880 (mRNA) Nannochloropsis gaditana

Overview
Namerna6880
Unique Namerna6880
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length302
Alignment locationCM002469.1:709713..710486 +

Link to JBrowse

Properties
Property NameValue
ProductSymplekin
Orig transcript idgnl|cribi|Naga_101274g1.5038.mrna
Orig protein idgnl|cribi|Naga_101274g1.5038
GeneSYMPK
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:709713..710486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SYMPKgene6652Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6880rna6880-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23806.1cds6864Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6880 ID=rna6880|Name=rna6880|organism=Nannochloropsis gaditana|type=mRNA|length=302bp
ACAGGCACCCTTAGCAGATGGATAGTACAAGTCTGAATGTTGTGCCGATG
GTCGTGGACGACAAGGAAGGCAATGACGAGGATCTGCAGTTCTCCGCTAC
CTCCTCCCTTGCCCCAACCACCCTTCTTCGCGATCAGGCCTTAGGGCTTA
TAAGTGATGCACAGACGGCAGAACGAAAAGACAAAGAAGTACTGCTGAAA
CAGGTGCAAGAATTAGTTCTTTACCGGGACCCCACGTTACTGGACGAAGT
GGTGCCGCTATTAATCAGCGAGTTTCAGGTACGTTGTGGAGGGAAGGAGT
GA
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protein sequence of rna6880

>rna6880-protein ID=rna6880-protein|Name=rna6880|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPR
VWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAY
ATRSRKNVGLDVAKRKVLGL
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mRNA from alignment at CM002469.1:709713..710486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6880 ID=rna6880|Name=rna6880|organism=Nannochloropsis gaditana|type=mRNA|length=774bp|location=Sequence derived from alignment at CM002469.1:709713..710486+ (Nannochloropsis gaditana)
CCTCAGCCCTGGCGCTGGTGAAAATGGTGGAAGAGAAATCCCTCCCAGTG
CCCTACGCTTACATGCGCTCGGTGATCTTGGCCATACGGGCCTACCCTGG
CCTCAAGCCCGTGGTAGCCAACACCTTAGTACCTAAACTGGTGGAACGGG
AGGTGTGTACGCGTCGGTAGTGGCTGCTGCCTCTTTTCTGGGTCACCCTT
CGGATTTTTTCTTCTATTTCTCTAGTAAAGTTTGGCGAGGATAGGGTAGA
AGGCCCTTGTGATGCATCGCGCTATGTGGGATGCAGCCTATGCTGGTGAC
TGCTCTCTCATTTCTTTGTGTAACGCCAGCTCTCACTTtacctttcttct
cctttcttgctttctctgtccggctccctccctccttccctccctcccac
tctctcctccggctGCCCTCGGTCAGATCTGGAGCACGCAGCCCCGTGTT
TGGGAAGGTCTGATCCTGCTGCCCAAGTACATCGGGACACGGGAGCTCAC
GGAGAAGATGAACGAAGCTCTTTTtacccttcccacctccttgctTCAGG
ACCTTCTGAAGAAAAACCCGGATATACGGCCCATTTTAGCGGCCTATGCC
ACCCGATCGCGCAAAAATGTTGGGTTGGACGTGGCGAAACGTAAAGTATT
GGGCTTGTGAGTGGCAAAACAAAAAGAAATAAATCATGTACTTTAAAAGA
GTCCTATTTTCGCGTTGCAAGACCATGCAAGCTTTACGAAAGCCGTGACC
TTTTGACATGTCACTTCTGTCTCT
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Coding sequence (CDS) from alignment at CM002469.1:709713..710486+

>rna6880 ID=rna6880|Name=rna6880|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at CM002469.1:709713..710486+ (Nannochloropsis gaditana)
ATGGTGGAAGAGAAATCCCTCCCAGTGCCCTACGCTTACATGCGCTCGGT
GATCTTGGCCATACGGGCCTACCCTGGCCTCAAGCCCGTGGTAGCCAACA
CCTTAGTACCTAAACTGGTGGAACGGGAGATCTGGAGCACGCAGCCCCGT
GTTTGGGAAGGTCTGATCCTGCTGCCCAAGTACATCGGGACACGGGAGCT
CACGGAGAAGATGAACGAAGCTCTTTTtacccttcccacctccttgctTC
AGGACCTTCTGAAGAAAAACCCGGATATACGGCCCATTTTAGCGGCCTAT
GCCACCCGATCGCGCAAAAATGTTGGGTTGGACGTGGCGAAACGTAAAGT
ATTGGGCTTGTGAATGGTGGAAGAGAAATCCCTCCCAGTGCCCTACGCTT
ACATGCGCTCGGTGATCTTGGCCATACGGGCCTACCCTGGCCTCAAGCCC
GTGGTAGCCAACACCTTAGTACCTAAACTGGTGGAACGGGAGATCTGGAG
CACGCAGCCCCGTGTTTGGGAAGGTCTGATCCTGCTGCCCAAGTACATCG
GGACACGGGAGCTCACGGAGAAGATGAACGAAGCTCTTTTtacccttccc
acctccttgctTCAGGACCTTCTGAAGAAAAACCCGGATATACGGCCCAT
TTTAGCGGCCTATGCCACCCGATCGCGCAAAAATGTTGGGTTGGACGTGG
CGAAACGTAAAGTATTGGGCTTGTGA
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Synonyms
Publications