EWM23806.1, cds6864 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|585105049|gb|EWM23806.1| (Symplekin [Nannochloropsis gaditana]) HSP 1 Score: 238.039 bits (606), Expect = 2.114e-79 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 Query: 1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL Sbjct: 1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|953444183|ref|XP_014565644.1| (hypothetical protein L969DRAFT_96650 [Mixia osmundae IAM 14324] >gi|358053907|dbj|GAB00040.1| hypothetical protein E5Q_06742 [Mixia osmundae IAM 14324] >gi|658162351|gb|KEI37070.1| hypothetical protein L969DRAFT_96650 [Mixia osmundae IAM 14324]) HSP 1 Score: 65.855 bits (159), Expect = 4.510e-10 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0 Query: 9 VPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVL 118 +P +MR+VI +I + L V+NTL+ +LV ++IW T P++WEG I K IG AL LP L+DL+ K P +RP L + K VG + A+ +L Sbjct: 980 LPTLFMRTVIQSISVHKSLMSFVSNTLLARLVTKKIWET-PQLWEGFIRCAKSIGPPSFG-----ALLQLPRDQLKDLVAKQPTLRPALKDFVI---KKVGSNKARVTLL 1080
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1183468500|gb|ORY92427.1| (Symplekin tight junction protein C terminal-domain-containing protein [Leucosporidium creatinivorum]) HSP 1 Score: 65.4698 bits (158), Expect = 5.479e-10 Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 0 Query: 1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVL 118 +V+E LPV +MR+VI A+ Y L+P V+ TL+P+L+ +++W T P +WEG I K I AL LP L+D+++K P ++ L Y ++ G + A+ VL Sbjct: 981 LVDEPVLPV--LFMRTVIQAVTTYKTLQPFVSATLLPRLISKKVWETGP-LWEGFIRCAKVISPHSFA-----ALLLLPQEQLKDVVEKQPTLKGPLREYV---KQKTGSNKARSAVL 1087
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674943046|emb|CDX90095.1| (BnaA08g18890D [Brassica napus]) HSP 1 Score: 63.1586 bits (152), Expect = 3.924e-9 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+VI AI A+P L VV L KLV R+IW P++W G + + L LP L+ ++KK PD+RP L AYA + L + VLGL Sbjct: 1214 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPAIRASLPNSALSVLGL 1319
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|923713771|ref|XP_013663226.1| (PREDICTED: uncharacterized protein LOC106367907 isoform X1 [Brassica napus]) HSP 1 Score: 62.7734 bits (151), Expect = 4.195e-9 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+VI AI A+P L VV L KLV R+IW P++W G + + L LP L+ ++KK PD+RP L AYA + L + VLGL Sbjct: 1179 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPAIRASLPNSALSVLGL 1284
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|971514107|dbj|GAQ84109.1| (HEAT repeat family protein [Klebsormidium nitens]) HSP 1 Score: 62.7734 bits (151), Expect = 4.249e-9 Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+V+ ++ A P L+P V L+ +LV REIW+ P++W G + + L L LP + +++ KNPD++P+LAA+ T + L + VLGL Sbjct: 1051 PIPLLFMRTVLQSVGASPSLRPFVVE-LLGRLVRREIWNM-PQLWVGFLKAAHHTVPDSLP-----VLLQLPARQVAEVVAKNPDLKPLLAAHVTHTSARTALPRSILAVLGL 1156
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1183404247|gb|ORY28819.1| (Symplekin tight junction protein C terminal-domain-containing protein [Naematelia encephala]) HSP 1 Score: 62.7734 bits (151), Expect = 4.842e-9 Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0 Query: 9 VPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAY 100 +P ++R+VI A+ Y L P +AN ++PKL+ ++IW T P++W+G I L K I AL LP L+++L + P ++ L AY Sbjct: 963 LPVVFLRTVIQAVTTYKSLIPFIANNVLPKLIGKKIWET-PQLWDGFIRLAKMIAPHSFG-----ALCQLPKEQLKEVLSRQPGLQDGLRAY 1048
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674235345|gb|KFK28110.1| (hypothetical protein AALP_AA8G473900 [Arabis alpina]) HSP 1 Score: 62.3882 bits (150), Expect = 6.187e-9 Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+VI AI AYP L V L KLV ++IW P++W G + + L LP L++++KK PD+RP L AYA + L + VLGL Sbjct: 1193 PLPLLFMRTVIQAIDAYPTLVDFVMEIL-SKLVSKQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLENIMKKFPDLRPSLTAYANQPTIRASLPNSALSVLGL 1298
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674921459|emb|CDY11788.1| (BnaC03g57900D [Brassica napus]) HSP 1 Score: 62.3882 bits (150), Expect = 6.892e-9 Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+VI AI A+P L VV L KLV R+IW P++W G + + L LP L+ ++KK PD+RP LA YA + L VLGL Sbjct: 1226 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVNRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLATYANQPTIRASLPNPALSVLGL 1331
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1073000830|ref|XP_018451363.1| (PREDICTED: uncharacterized protein LOC108822715 isoform X1 [Raphanus sativus]) HSP 1 Score: 62.003 bits (149), Expect = 7.655e-9 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120 P+P +MR+VI AI A+P L VV L KLV R+IW P++W G + + L LP L+ ++KK PD+RP L AYA + L + VLGL Sbjct: 1181 PLPLLFMRTVIQAIDAFPTLVDVVMKIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPTIRASLLNSALSVLGL 1286 The following BLAST results are available for this feature:
BLAST of EWM23806.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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