EWM23806.1, cds6864 (CDS) Nannochloropsis gaditana

Overview
NameEWM23806.1
Unique Namecds6864
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:709736..709864 +
Alignment locationCM002469.1:710139..710372 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23806.1
ProductSymplekin
Orig transcript idgnl|cribi|Naga_101274g1.5038.mrna
GeneSYMPK
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:709736..709864 +
CM002469.1supercontigCM002469.1:710139..710372 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR022075Symplekin_C
Homology
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|585105049|gb|EWM23806.1| (Symplekin [Nannochloropsis gaditana])

HSP 1 Score: 238.039 bits (606), Expect = 2.114e-79
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL
Sbjct:    1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|953444183|ref|XP_014565644.1| (hypothetical protein L969DRAFT_96650 [Mixia osmundae IAM 14324] >gi|358053907|dbj|GAB00040.1| hypothetical protein E5Q_06742 [Mixia osmundae IAM 14324] >gi|658162351|gb|KEI37070.1| hypothetical protein L969DRAFT_96650 [Mixia osmundae IAM 14324])

HSP 1 Score: 65.855 bits (159), Expect = 4.510e-10
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0
Query:    9 VPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVL 118
            +P  +MR+VI +I  +  L   V+NTL+ +LV ++IW T P++WEG I   K IG          AL  LP   L+DL+ K P +RP L  +     K VG + A+  +L
Sbjct:  980 LPTLFMRTVIQSISVHKSLMSFVSNTLLARLVTKKIWET-PQLWEGFIRCAKSIGPPSFG-----ALLQLPRDQLKDLVAKQPTLRPALKDFVI---KKVGSNKARVTLL 1080          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1183468500|gb|ORY92427.1| (Symplekin tight junction protein C terminal-domain-containing protein [Leucosporidium creatinivorum])

HSP 1 Score: 65.4698 bits (158), Expect = 5.479e-10
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVL 118
            +V+E  LPV   +MR+VI A+  Y  L+P V+ TL+P+L+ +++W T P +WEG I   K I           AL  LP   L+D+++K P ++  L  Y    ++  G + A+  VL
Sbjct:  981 LVDEPVLPV--LFMRTVIQAVTTYKTLQPFVSATLLPRLISKKVWETGP-LWEGFIRCAKVISPHSFA-----ALLLLPQEQLKDVVEKQPTLKGPLREYV---KQKTGSNKARSAVL 1087          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674943046|emb|CDX90095.1| (BnaA08g18890D [Brassica napus])

HSP 1 Score: 63.1586 bits (152), Expect = 3.924e-9
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+VI AI A+P L  VV   L  KLV R+IW   P++W G +         +        L  LP   L+ ++KK PD+RP L AYA +      L  +   VLGL
Sbjct: 1214 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPAIRASLPNSALSVLGL 1319          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|923713771|ref|XP_013663226.1| (PREDICTED: uncharacterized protein LOC106367907 isoform X1 [Brassica napus])

HSP 1 Score: 62.7734 bits (151), Expect = 4.195e-9
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+VI AI A+P L  VV   L  KLV R+IW   P++W G +         +        L  LP   L+ ++KK PD+RP L AYA +      L  +   VLGL
Sbjct: 1179 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPAIRASLPNSALSVLGL 1284          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|971514107|dbj|GAQ84109.1| (HEAT repeat family protein [Klebsormidium nitens])

HSP 1 Score: 62.7734 bits (151), Expect = 4.249e-9
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+V+ ++ A P L+P V   L+ +LV REIW+  P++W G +    +     L       L  LP   + +++ KNPD++P+LAA+ T +     L  +   VLGL
Sbjct: 1051 PIPLLFMRTVLQSVGASPSLRPFVVE-LLGRLVRREIWNM-PQLWVGFLKAAHHTVPDSLP-----VLLQLPARQVAEVVAKNPDLKPLLAAHVTHTSARTALPRSILAVLGL 1156          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1183404247|gb|ORY28819.1| (Symplekin tight junction protein C terminal-domain-containing protein [Naematelia encephala])

HSP 1 Score: 62.7734 bits (151), Expect = 4.842e-9
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    9 VPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAY 100
            +P  ++R+VI A+  Y  L P +AN ++PKL+ ++IW T P++W+G I L K I           AL  LP   L+++L + P ++  L AY
Sbjct:  963 LPVVFLRTVIQAVTTYKSLIPFIANNVLPKLIGKKIWET-PQLWDGFIRLAKMIAPHSFG-----ALCQLPKEQLKEVLSRQPGLQDGLRAY 1048          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674235345|gb|KFK28110.1| (hypothetical protein AALP_AA8G473900 [Arabis alpina])

HSP 1 Score: 62.3882 bits (150), Expect = 6.187e-9
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+VI AI AYP L   V   L  KLV ++IW   P++W G +         +        L  LP   L++++KK PD+RP L AYA +      L  +   VLGL
Sbjct: 1193 PLPLLFMRTVIQAIDAYPTLVDFVMEIL-SKLVSKQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLENIMKKFPDLRPSLTAYANQPTIRASLPNSALSVLGL 1298          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|674921459|emb|CDY11788.1| (BnaC03g57900D [Brassica napus])

HSP 1 Score: 62.3882 bits (150), Expect = 6.892e-9
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+VI AI A+P L  VV   L  KLV R+IW   P++W G +         +        L  LP   L+ ++KK PD+RP LA YA +      L      VLGL
Sbjct: 1226 PLPLLFMRTVIQAIDAFPTLVDVVMEIL-SKLVNRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLATYANQPTIRASLPNPALSVLGL 1331          
BLAST of EWM23806.1 vs. NCBI_GenBank
Match: gi|1073000830|ref|XP_018451363.1| (PREDICTED: uncharacterized protein LOC108822715 isoform X1 [Raphanus sativus])

HSP 1 Score: 62.003 bits (149), Expect = 7.655e-9
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0
Query:    8 PVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120
            P+P  +MR+VI AI A+P L  VV   L  KLV R+IW   P++W G +         +        L  LP   L+ ++KK PD+RP L AYA +      L  +   VLGL
Sbjct: 1181 PLPLLFMRTVIQAIDAFPTLVDVVMKIL-SKLVSRQIWRL-PKLWPGFLKC-----VSQTQPHSFPVLLELPMPQLESIMKKFPDLRPSLTAYANQPTIRASLLNSALSVLGL 1286          
The following BLAST results are available for this feature:
BLAST of EWM23806.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105049|gb|EWM23806.1|2.114e-79100.00Symplekin [Nannochloropsis gaditana][more]
gi|953444183|ref|XP_014565644.1|4.510e-1037.27hypothetical protein L969DRAFT_96650 [Mixia osmund... [more]
gi|1183468500|gb|ORY92427.1|5.479e-1034.75Symplekin tight junction protein C terminal-domain... [more]
gi|674943046|emb|CDX90095.1|3.924e-937.17BnaA08g18890D [Brassica napus][more]
gi|923713771|ref|XP_013663226.1|4.195e-937.17PREDICTED: uncharacterized protein LOC106367907 is... [more]
gi|971514107|dbj|GAQ84109.1|4.249e-933.63HEAT repeat family protein [Klebsormidium nitens][more]
gi|1183404247|gb|ORY28819.1|4.842e-935.87Symplekin tight junction protein C terminal-domain... [more]
gi|674235345|gb|KFK28110.1|6.187e-936.28hypothetical protein AALP_AA8G473900 [Arabis alpin... [more]
gi|674921459|emb|CDY11788.1|6.892e-937.17BnaC03g57900D [Brassica napus][more]
gi|1073000830|ref|XP_018451363.1|7.655e-937.17PREDICTED: uncharacterized protein LOC108822715 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6880rna6880Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications